HHsearch alignment for GI: 254780866 and conserved domain: PRK08676
>PRK08676 hydrogenase membrane subunit; Validated.
Probab=100.00 E-value=0 Score=623.83 Aligned_cols=444 Identities=24% Similarity=0.355 Sum_probs=383.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 30357999999999999999999998630888818999863134854054665225889999999999999997520112
Q gi|254780866|r 28 CGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI 107 (499)
Q Consensus 28 ~~~~~~~~i~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~ 107 (499)
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~sl~~l~--~~~~~~~~~~----------~~~~~iD~Ls~~~l~l~~~v~~l~~lyS~~Ym 86 (486)
T PRK08676 19 RSHRLLNALAVGHGLWHLGLSLYVLL--VLPLPGYFME----------SRYLFIDHLGLFVVLIASLIFILAALYARGYV 86 (486)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH--HCCCCCHHCC----------CCHHEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86767799999999999999999997--3564210035----------72221666169999999999999999988885
Q ss_pred C----------CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 1----------002356789998630243026540433111234310343123553123433232100011355445567
Q gi|254780866|r 108 Q----------ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIF 177 (499)
Q Consensus 108 ~----------~~~~~f~~llll~~~~~~~~~~s~dl~~l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~ 177 (499)
T Consensus 87 ~~~~~~~~~~~~~~~~fy~l~~l~~~~m~~~~~s~nl~~fyvf~E~~~i~s~~LI~~~~~~~~~~Aa~ky~~~~~~~~~~ 166 (486)
T PRK08676 87 DHLLESGELDPENLKVFYLGFNLLLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIF 166 (486)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 11410245687546699999999999999999995899999999999999999997579899999999999999999999
Q ss_pred HHHHHHHHHHHH------CCCCHHHHHHHHC-CCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 766655443210------0010034432101-330378999985410344455400023201010002222344333323
Q gi|254780866|r 178 MLFAIVVMCWEK------KTSSIIDLYAMSK-FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGI 250 (499)
Q Consensus 178 lL~g~~~l~~~~------gs~~~~~~~~~~~-~~~~~~~~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~ 250 (499)
T Consensus 167 ~l~g~~~l~~~~~~~~~~gtl~~~~l~~~~~~~~~~~~~~~~~l~ligf~~K~~~~PfH~WLPdA~~eAPtpvSalLsav 246 (486)
T PRK08676 167 AFIGLIFLFELTRQALGTGTLNWTELAAHASLLSPGMLGASFLFIFIGFAAKSGIVPFHTWLPAAYAKAPSAVSAVLSGT 246 (486)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 99999999999998725786039999976313785899999999999999987151215650676678994799999999
Q ss_pred CCCCCCCCCCHHCCCCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 2233321110000111223-310000000001222221221110000244322332100135402333104875422102
Q gi|254780866|r 251 MLKMGGYGCIRFLLPLFPL-ASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA 329 (499)
Q Consensus 251 ~~k~g~~~l~r~~~~l~~~-~~~~~~~~l~~l~~~t~~~g~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~ 329 (499)
T Consensus 247 l~k~G~y~i~R~~~~~~~~~~~~~~~~~l~~lg~~tii~g~~~Al~Q~DlKrlLAYSSIshmG~i~lg~~~gt~~~~~ga 326 (486)
T PRK08676 247 VLNIGIYGILRMSALLRQSGAAEQVSNVLIVFGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWA 326 (486)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999999999862302489999999999999999999999987116799999799999999999996739999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 34555421023330356777764200111100235565420233201345555301024443112289999999865999
Q gi|254780866|r 330 MFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409 (499)
Q Consensus 330 ~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~~~~~~~~~ 409 (499)
T Consensus 327 l~~~i~H~l~k~~LFl~aG~i~~~~gt~~i~~l~GL~~~mP~~a~~~~i~~lsl~GlPP~~gF~sK~~i~~~~~~~~~~~ 406 (486)
T PRK08676 327 LFHMLAHSLVKAGLFFSAGILHRQYRSDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGAISVWL 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999749976998659886638999999999999987767545999999999999876799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999972889876--55568788912689999999999999772-488999999999999
Q gi|254780866|r 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCE--KVQQLKDLSLRERCMVYPIAVLTVFFGIY-PVPIRDTFSVPLSSI 483 (499)
Q Consensus 410 ~~~~~~~~~ls~~~~l~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~i~lGi~-p~~~~~~~~~~~~~l 483 (499)
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~m~~p~~iLa~l~l~lGv~~p~~l~~~l~~~~~~l 483 (486)
T PRK08676 407 VLAVLLLLLLAASSFANFLLKAFTRSTPEEENRDPVPYRTPLSMKVPIVILLALVLALGVYFPPGLADFLDQIVKEL 483 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999557788777888877686318999999999999999664467999999999983