HHsearch alignment for GI: 254780866 and conserved domain: pfam00361
>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=100.00 E-value=0 Score=464.38 Aligned_cols=268 Identities=37% Similarity=0.677 Sum_probs=249.8
Q ss_pred ECCCCCHHHHHHHCCCCCEEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHH
Q ss_conf 404331112343103431235531234-3323210001135544556776665544321000100344321013303789
Q gi|254780866|r 131 SLDMLLFYIFFEASLIPMFVIIGVWGG-SERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQY 209 (499)
Q Consensus 131 s~dl~~l~v~~El~~l~~~~Li~~~~~-~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~ 209 (499)
T Consensus 1 s~dl~~~~v~~El~~l~~y~Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~-~~~~~~~ 79 (270)
T pfam00361 1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFG-LNSNGLL 79 (270)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC-CCCHHHH
T ss_conf 974999999999999999999883499999999999999999999999999999999986222699998643-5634899
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCCCCCCC
Q ss_conf 99985410344455400023201010002222344333323223332111000011122331000000000122222122
Q gi|254780866|r 210 WMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289 (499)
Q Consensus 210 ~~~~ll~~g~~~K~~~~PfH~WlP~~y~~ap~~~salls~~~~k~g~~~l~r~~~~l~~~~~~~~~~~l~~l~~~t~~~g 289 (499)
T Consensus 80 ~~~~l~~~g~~~K~~~~PfH~Wlpday~~ap~~~s~~ls~v~~~~g~~~l~r~~~~~~--~~~~~~~~l~~~~~~s~i~g 157 (270)
T pfam00361 80 LLSLLLLVAFLVKSPQFPFHFWLPDAHEGPPPVSSLILATTLKKAGLYLLLRLSNLFS--SSNLISYILLILGILSMLLG 157 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999948624755778857998789999998999999999999998613--23789999999999999999
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 11100002443223321001354023331048754221023455542102333035677776420011110023556542
Q gi|254780866|r 290 SLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369 (499)
Q Consensus 290 ~l~al~q~d~KrllAySsi~~~G~i~~~l~~~~~~~~~~~~~~~~~h~~~k~~lFl~~g~i~~~~g~~~l~~l~Gl~~~~ 369 (499)
T Consensus 158 ~~~Al~Q~dlKrllAYSSis~~G~il~~~~~~~~~~~~~~~~~~i~h~~~k~~lF~~~g~i~~~~~~~~i~~l~Gl~~~~ 237 (270)
T pfam00361 158 SLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLFLLAGLIIHRSGTRDLRNYGGLFNSM 237 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHH
T ss_conf 99998330277999999999999999999986577999999999999999999999999999875887099870969882
Q ss_pred HCCCCCHHHHHHHHCCCHHHHHHCCHHHHHHH
Q ss_conf 02332013455553010244431122899999
Q gi|254780866|r 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMS 401 (499)
Q Consensus 370 P~~~~~~~i~~lsl~G~Pp~~GF~~k~~i~~~ 401 (499)
T Consensus 238 P~~~~~~~i~~lsl~GiPp~~GF~~K~~i~~s 269 (270)
T pfam00361 238 PILALLLLLLLLSLMGLPPLLGFISKFLILES 269 (270)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999877576038899999864