HHsearch alignment for GI: 254780866 and conserved domain: pfam10125

>pfam10125 NADHdeh_related NADH dehydrogenase I, subunit N related protein. This family comprises a set of NADH dehydrogenase I, subunit N related proteins found in archaea. Their exact function, has not, as yet, been determined.

Probab=98.46  E-value=4.4e-07  Score=56.09  Aligned_cols=155  Identities=17%  Similarity=0.210  Sum_probs=112.6

Q ss_pred             EEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCC------------------CCHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf             054665225889999999999999997520112------------------10023567899986302430265404331
Q gi|254780866|r   75 CSYHLGVDGISILLVVLTTFLTPFCILSSWKSI------------------QENFREYMIAFLVLESMVIGAFLSLDMLL  136 (499)
Q Consensus        75 ~~~~l~iD~ls~~f~~l~~~i~~l~~~ys~~~~------------------~~~~~~f~~llll~~~~~~~~~~s~dl~~  136 (499)
T Consensus        16 GDIV~Y~s~~~~i~F~~al~Ft~lv~ls~pE~qve~~~~~~~~k~~~V~~~e~k~rrfma--ivCGiAtagam~TgDlFn   93 (219)
T pfam10125        16 GDIVFYLSPFTMILFVVALIFTILVILSRPEKQVEIQFGTDGDKLKEVSPDELRIRRFMA--IVCGLATAGAMVTGDLFN   93 (219)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCHHHHHHHHHHH--HHHHHHHHCCEEECCHHH
T ss_conf             667776060689999999999988521488504654424665311453889999999999--998886513000130677


Q ss_pred             HHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             11234310343123553123433232100011355445567766655443210001003443210133037899998541
Q gi|254780866|r  137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFF  216 (499)
Q Consensus       137 l~v~~El~~l~~~~Li~~~~~~~~~~aa~ky~i~~~~~s~~lL~g~~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~ll~  216 (499)
T Consensus        94 FtLFlaliGI~NIGIVsaVk~~~VLnaAf~YGliamiaslPLFGgAaliLa~tGTLSi~EL~~~~~---~~l~~~k~l~~  170 (219)
T pfam10125        94 FTLFLALIGISNIGIVSAVKNEWVLNAAFNYGLIAMIATLPLFGGAALILAKTGTLSIWELSKMAG---DVLLYAKILLA  170 (219)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCEEHHHHHCCCC---CHHHHHHHHHH
T ss_conf             999999976112210210417899987875538999864643315787765467404998852884---23899999999


Q ss_pred             CCCCCCCCCCCCCCCCCC
Q ss_conf             034445540002320101
Q gi|254780866|r  217 CSFAIKIPMFPFHTWLPN  234 (499)
Q Consensus       217 ~g~~~K~~~~PfH~WlP~  234 (499)
T Consensus       171 ~Gv~GE~GvAPFYaaKAE  188 (219)
T pfam10125       171 AGVIGETGVAPFYAAKAE  188 (219)
T ss_pred             HHHCCCCCCCHHHHHHHH
T ss_conf             775054675515776788