RPSBLAST alignment for GI: 254780866 and conserved domain: TIGR01960

>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family. This family represents a subfamily of NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighboring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby. Length = 606
 Score = 69.8 bits (171), Expect = 2e-12
 Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 14/277 (5%)

Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW-GGSERIYAAYKFFLYTFFGSIFMLF 180
           E+ + G  LS  +   Y+  E   +  +++IG W      +  A   FL    G + +L 
Sbjct: 130 EAGLGGLVLSDSLFFSYVLLEILTLSTYLLIGFWFAQPLVVTGARDAFLTKRVGDLILLM 189

Query: 181 AIVVMCWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237
            +V +     + +  DL    A +    +    + +A       K   FP H WL  A +
Sbjct: 190 GVVALSPLAGSWNYDDLAQWAATANVNPTTATLLGLALIAGPTGKCAQFPLHLWLDEA-M 248

Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295
           + P   S+    +++  G +  I+   +L L P+A       +  +  +  I  SL+++ 
Sbjct: 249 EGPNPASILRNSVVVATGAWVLIKLQPVLTLSPVALT----ALIAIGSVTAIGGSLIAIA 304

Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355
           Q DIK+ ++YS  A+MG V I +  G+  G + A+  +L+H +  + LF  +G I     
Sbjct: 305 QIDIKRALSYSVSAYMGLVFIAV--GLGQG-DLALLLLLTHAIAKALLFMSIGSIIWNTV 361

Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392
           T+D+   GGL    P   +  +V +   + +P    F
Sbjct: 362 TQDLTELGGLWSRRPISGLSFVVGSAGLIAVPPLGSF 398