RPSBLAST alignment for GI: 254780866 and conserved domain: TIGR01974

>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone oxidoreductase, chain L. This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. Length = 617

 Score =  106 bits (268), Expect = 1e-23
 Identities = 125/506 (24%), Positives = 215/506 (42%), Gaps = 45/506 (8%)

Query: 6   LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTI-----NFIFSLFV-WSVFDKGR 59
           + ++ FLP +G          G   R     A GI  I     +   S FV       G+
Sbjct: 3   IFLIVFLPLIG------FLIAGLFGRRIGKRASGIIGIGSVGVSAALSAFVFVDFLLNGQ 56

Query: 60  SSFQMIEYYHWI---DYFCSYHLGVDGIS-ILLVVLTTFLTPFCILSSW----KSIQENF 111
                   + WI    +   + L +D +S  +L+V+T       I S            F
Sbjct: 57  GEAFTQSLFPWISVGGFQVDFGLRLDQLSLTMLIVVTGVSLLVHIYSIGYMAHDEGYSRF 116

Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI-YAAYKFFLY 170
             Y+  F     M++   L+ + L  +  +E   +  +++IG W        AA K F+ 
Sbjct: 117 FAYLSLFTFSMLMLV---LADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVV 173

Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF--AI-KIPMFP 227
              G   +L  I ++ W   T +  +++A+   P +    + +     F  A+ K    P
Sbjct: 174 NRVGDFGLLLGIFLIFWYFGTLNFQEVFAL--APGADFSALTLICLLLFIGAMGKSAQLP 231

Query: 228 FHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286
            HTWLP+A ++ PT  S  + A  M+  G Y   R   PLF L+      ++  +  I  
Sbjct: 232 LHTWLPDA-MEGPTPVSALIHAATMVTAGVYLVAR-TSPLFELSPTALY-LVTIIGAITA 288

Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG---AMFQMLSHGLVSSAL 343
           ++A+ V++VQ DIK+++AYS+ + +GY+       +  GV     A+F +++H    + L
Sbjct: 289 LFAATVALVQNDIKRILAYSTCSQLGYMF------LALGVGAYAAAIFHLMTHAFFKALL 342

Query: 344 FFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402
           F   G VI+   H +DI   GGL   MP   +  ++ ++A +G PG +GF  + L++ + 
Sbjct: 343 FLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAA 402

Query: 403 FQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460
           F +     + V    G  L+A YS  L      G  + E      +  L     +  +AV
Sbjct: 403 FASGTHSFLFVAGLIGAFLTAFYSFRLIFMTFHGKKRHEADSHPHESPLVMLLPLIVLAV 462

Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIEN 486
            +VF G + VP+ +     L +  E 
Sbjct: 463 GSVFAGFFIVPLFEFLKGVLPTSAEP 488