RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M
[Candidatus Liberibacter asiaticus str. psy62]
(499 letters)
>gnl|CDD|180285 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M;
Reviewed.
Length = 497
Score = 617 bits (1593), Expect = e-177
Identities = 261/499 (52%), Positives = 350/499 (70%), Gaps = 9/499 (1%)
Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRS 60
MN P LS++ FLP +G ++L + G R +AL + + + SL +W FD +
Sbjct: 1 MNWPLLSLLIFLPLIGGLLVLLTERFG--ARLARWIALIGTLLTLLLSLVLWIGFDSSNA 58
Query: 61 SFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119
FQ +E + WI F SYHLGVDGIS+LLVVLT LTP +L+SW+ I++ + YM A L
Sbjct: 59 GFQFVEKHPWIPRFGISYHLGVDGISLLLVVLTALLTPLAVLASWEEIKKRVKFYMAALL 118
Query: 120 VLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFML 179
LE VIG F +LD+LLFY+FFEA LIPM+ +IGVWGG RIYAA KFFLYT GS+ ML
Sbjct: 119 WLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNRIYAATKFFLYTLLGSLLML 178
Query: 180 FAIVVMCW----EKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235
AI+ + T I DL + P +QYW+++AFF +FA+K+PMFP HTWLP+A
Sbjct: 179 VAIIYLVVVYYNATGTFDIADLLNL-PLPPGVQYWLFLAFFIAFAVKMPMFPLHTWLPDA 237
Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295
HVQAPTAGSV LAGI+LKMG YG +RF LPLFP AS FAP+I L +IAIIY +LV++
Sbjct: 238 HVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAIIYGALVALA 297
Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355
QTDIKKLIAYSSI+HMG+VT+GIF+G + G++GA+FQM+SHGL S+ALF VGV+YDRLH
Sbjct: 298 QTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLH 357
Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415
TRDI YGGL MP A + F MA++GLPGTSGF+GEFL+++ FQ + +A +A+
Sbjct: 358 TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATT 417
Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475
G++L+A+YSLWLY++V+FG K +V +LKDL+ RE ++ P+ L + G+YP P+ D
Sbjct: 418 GLILAAVYSLWLYQRVMFGPVK-NEVAKLKDLNGRELLILLPLVALLLLLGVYPKPLLDV 476
Query: 476 FSVPLSSIIENYTLKTGYS 494
+ ++++ +
Sbjct: 477 IHPSVENLLQWVAPSVATT 495
>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone
oxidoreductase, chain M. This model describes the 13th
(based on E. coli) structural gene, M, of bacterial NADH
dehydrogenase I, as well as chain 4 of the corresponding
mitochondrial complex I and of the chloroplast NAD(P)H
dehydrogenase complex.
Length = 479
Score = 534 bits (1377), Expect = e-152
Identities = 248/472 (52%), Positives = 339/472 (71%), Gaps = 5/472 (1%)
Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65
LS++ FLP +G +IL G+ + +AL ++ + SL + FD S FQ
Sbjct: 1 LSLLIFLPLIGALLILLLP-SKKGKARW--IALVVALATLLLSLLLLFQFDPTGSGFQFT 57
Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124
E WI SYHLGVDGIS+ LV+LT LT IL+SW+SIQ+ +E+ FL+LE+
Sbjct: 58 ESIPWIPALGISYHLGVDGISLPLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEAG 117
Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184
VIG F +LD+LLFY+F+EA LIPM+++IGVWGG RIYAA KFFLYT GS+ ML AI+
Sbjct: 118 VIGVFAALDLLLFYVFWEAMLIPMYLLIGVWGGPNRIYAAMKFFLYTLAGSLLMLLAILG 177
Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244
+ + T +++L + PFS+Q W+++AFF +FA+K+P+FP HTWLP+AHV+APTAGS
Sbjct: 178 LYFLGGTFDLLELINLP-LPFSVQTWLFLAFFIAFAVKVPLFPLHTWLPDAHVEAPTAGS 236
Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304
V LAG++LKMG YG +RF LPLFP AS YFAPV+ L++IAIIY +L+++ QTDIK+LIA
Sbjct: 237 VILAGVLLKMGTYGFLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIKRLIA 296
Query: 305 YSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGG 364
YSSI+HMG+V +GIFS + G+ GA+FQM+SHGL+++ALF VGV+YDR HTRDI YGG
Sbjct: 297 YSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYDRAHTRDIAKYGG 356
Query: 365 LVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYS 424
L + MP A M+F MA++GLPGTSGF+GEFL+++ F+ + VA LA+ G+VL+A Y
Sbjct: 357 LANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGAFKVNPVVAFLAALGIVLTAAYM 416
Query: 425 LWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTF 476
LWLY++V FG +V + DL+ RE ++ P+ VL +F G+YP P+ D
Sbjct: 417 LWLYKRVFFGELSNPEVAEFPDLNGREIAVLAPLVVLILFLGLYPNPLLDLT 468
>gnl|CDD|183596 PRK12561, PRK12561, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 504
Score = 327 bits (840), Expect = 4e-90
Identities = 167/456 (36%), Positives = 263/456 (57%), Gaps = 15/456 (3%)
Query: 36 VALGISTINFIFSLFV-WSVFDKGRSSFQMIEYYHWIDYF-CSYHLGVDGISILLVVLTT 93
ALG+ +F +V W +D SS Q++E Y W+ + LGVDG+S+ LV+L+
Sbjct: 10 YALGVGLADFALMCYVFWQHYDPSSSSLQLVERYAWLPQIGLEWSLGVDGLSMPLVLLSG 69
Query: 94 FLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIG 153
+T I +SWK + R + LVL S IG FL+ D+LLF++ +E L+P++++I
Sbjct: 70 LITTLSIFASWK-VTRKPRLFYFLMLVLYSAQIGVFLAQDLLLFFLMWELELVPVYLLIS 128
Query: 154 VWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCW--EKKTSSIIDLYAMSKFPFSIQYWM 211
+WGG +R+YAA KF LYT SIF+L A + + + T + +L +P +++ +
Sbjct: 129 IWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTFTFDLAEL-GAKSYPLALELLL 187
Query: 212 WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS 271
+ F +F +K+P+FP HTWLP+AH +A S+ LAG++LKMGGY IRF + + P A
Sbjct: 188 YAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNVQMLPDAH 247
Query: 272 QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMF 331
YFAP + L ++ IIY +L + Q ++K+ +AYSS++HMG+V +GI + G+ GAM
Sbjct: 248 VYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAML 307
Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391
QM+SHGL+++ALFF GV Y+R HT I GGL MP+ + +MA++ LPG SG
Sbjct: 308 QMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSG 367
Query: 392 FIGEFLVIMSVFQNSN-------TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--Q 442
F+ E V + + + +LA+ G++L+ +Y L + R+V +G
Sbjct: 368 FVSELTVFLGITSSDVYSSTFRTITILLAAVGLILTPIYLLSMLRRVFYGPRSELLPALA 427
Query: 443 QLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDTFSV 478
++D RE + + V + G YP + V
Sbjct: 428 VVEDAKPRELFIALSLLVPIIGIGFYPKLATQLYDV 463
>gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4;
Validated.
Length = 500
Score = 319 bits (820), Expect = 8e-88
Identities = 185/469 (39%), Positives = 270/469 (57%), Gaps = 8/469 (1%)
Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65
LS + ++P LG +I F G+ + VAL I+++ + SL + FD G + Q
Sbjct: 2 LSALIWIPLLGAILIGFWPSGINGKLAR-SVALVIASVLLLLSLVLAFQFDPGNPNQQFT 60
Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124
E+ WID SYHLGVDG+S+ L+VL + LT I SS +SIQ R Y L+L +
Sbjct: 61 EFIPWIDSLGLSYHLGVDGLSLPLLVLNSLLTLIAIYSSDESIQRP-RFYYSLLLLLNAG 119
Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184
V GAFL+ D+LLF++F+E LIP++++I +WGG R YAA KF LYT I +L + +
Sbjct: 120 VSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLG 179
Query: 185 MCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAG 243
+ W SS + P S Q + F IKIP+ PFHTWLP+AHV+A T
Sbjct: 180 LVWLSGASSFDYEPLRSHTLPLSTQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPV 239
Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLI 303
SV LAG++LK+G YG +RF + LFP A Y AP + ++++++Y + ++ Q D+KK++
Sbjct: 240 SVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMV 299
Query: 304 AYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYG 363
AYSSI HMGY+ + + + A+FQM+SHGL+S+ LF VGV+Y + +RD+
Sbjct: 300 AYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLR 359
Query: 364 GLVH---NMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLS 420
GL++ +P +M++ MA+ G+PG GFI EFLV F +L G L+
Sbjct: 360 GLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLT 419
Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469
A+Y L L +V FG ++ L + ER +AVL V GI P
Sbjct: 420 AVYFLLLVNRVFFG-RLTAELSNLPRVLWSERLPALVLAVLIVVLGIQP 467
>gnl|CDD|179442 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4;
Provisional.
Length = 525
Score = 302 bits (775), Expect = 2e-82
Identities = 174/495 (35%), Positives = 276/495 (55%), Gaps = 28/495 (5%)
Query: 2 NLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFV-WSVFDKGRS 60
N P+L+ + P + +I F G G+ + AL + I+F+ +++ ++ +D
Sbjct: 5 NFPWLTTIILFPIVAALLIPFIPDKGDGKTVRW-YALIVGLIDFLITVYAFYTGYDFSNP 63
Query: 61 SFQMIEYYHWI-DYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFL 119
Q++E Y W+ ++ +G DG+S+ L++LT F+T +L++W F+ + FL
Sbjct: 64 GLQLVESYSWLPQLGLTWSVGADGLSMPLILLTGFITTLAVLAAWPV---TFKPKLFYFL 120
Query: 120 VLESMV---IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSI 176
+L +M I F DMLLF++ +E LIP+++++ +WGG +R YAA KF LYT S+
Sbjct: 121 ML-AMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQYAATKFILYTAGSSL 179
Query: 177 FMLFAIVVMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNA 235
F+L A + M + T + + A F Q + ++ +K+P+ P HTWLP+A
Sbjct: 180 FILLAALAMAFYGDTPTFDMTALAAKDFGLGFQLLCYAGLLIAYGVKLPIVPLHTWLPDA 239
Query: 236 HVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295
H +A + LAGI+LKMGGY +R + P A FAP++ L ++ IIYA+L S
Sbjct: 240 HGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGVVNIIYAALTSFA 299
Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355
Q ++K+ IAYSSI+HMG+V IGI S G GAM QM+SHGL+ ++LFF VG YDR H
Sbjct: 300 QRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTH 359
Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT------- 408
T + GG+ M + + ++A++ LPG SGF+ E +V + F S+
Sbjct: 360 TLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFVG-FATSDAYTLPFRV 418
Query: 409 -VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV--QQLKDLSLRERCMVYPIAVLTV-- 463
V LA+ GV+L+ +Y L + R++ FG E V ++L D RE V+ IA L V
Sbjct: 419 VVVFLAAVGVILTPIYLLSMLREIFFGPENKELVSHEKLVDAEPRE---VFIIACLLVPI 475
Query: 464 -FFGIYPVPIRDTFS 477
G+YP + ++
Sbjct: 476 IGIGLYPKLVTQSYD 490
>gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M;
Validated.
Length = 501
Score = 265 bits (678), Expect = 3e-71
Identities = 156/470 (33%), Positives = 253/470 (53%), Gaps = 10/470 (2%)
Query: 6 LSIVTFLPFLGVFVI-LFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQM 64
LS++ +LP LG +I F L R + L + + +SLF+ + FD Q
Sbjct: 2 LSVLLWLPILGAIIIGFFPGNLPSARLRQ--ITLVFAVLVLAWSLFLLTQFDLSDPGMQF 59
Query: 65 IEYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLES 123
EY W + SY LGVDG+S+ L+VL + LT I S ++ E R Y L++
Sbjct: 60 QEYLPWNEPLGLSYSLGVDGLSLPLLVLNSLLTWIAIYSIGENT-ERPRLYYSLILLING 118
Query: 124 MVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIV 183
+ GA L+ ++LLF++F+E LIP +++I +WGG +R YA+ KF +YT + +L A +
Sbjct: 119 GIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGYASIKFLIYTAVSGLLVLAAFL 178
Query: 184 VMCWEKKTSSI-IDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTA 242
+ W ++S D + + Q + F IKIP+ P HTWLP+A+ +A A
Sbjct: 179 GIVWLSGSTSFDYDAISTQNLSLNTQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPA 238
Query: 243 GSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKL 302
++ L G++ K+G YG +RF L LFP AP + + I++IY +L ++ Q DIK++
Sbjct: 239 VAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRM 298
Query: 303 IAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAY 362
+AYSSI HMGY+ + +G + + GA+ QM+SHGL+ + LF VG++ ++ TRD+
Sbjct: 299 VAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVGIVERKVGTRDLDVL 358
Query: 363 GGL---VHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419
GL + +P + ++++ MA+ G+PG GF+ EF+V F +L L
Sbjct: 359 NGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGL 418
Query: 420 SALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469
+A+Y + L + FG + K L E+ + L +F G+ P
Sbjct: 419 TAVYFVILLNRTCFGRLDNKLAYYPKVLW-SEKIPALILTALILFLGVQP 467
>gnl|CDD|181404 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 487
Score = 193 bits (494), Expect = 6e-50
Identities = 111/475 (23%), Positives = 222/475 (46%), Gaps = 19/475 (4%)
Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSL-FVWSVFDKGRSSFQM 64
L ++ +P L +I+ L RR + +AL ++ + F ++ + V D G ++ +
Sbjct: 6 LPLLVAVPLLAAALIVL---LPKRRRLRWALALLVAALTFALAISLLPQVLDGGVIAYVV 62
Query: 65 IEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM 124
+ I L D +S L +++T+ L +L + + + FL+L +
Sbjct: 63 GGWPPGI----GIELRADSLSALFLLVTSILAIAALLYAIGYGEHRQTRFYALFLLLLAG 118
Query: 125 VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184
++GA L+ D+ ++F E + + ++ + G + AA K+ + GS F+L + +
Sbjct: 119 LLGALLTADLFNLFVFLEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGL 178
Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244
+ T ++ DL ++ + A+K +FP HTWLP A+ AP +
Sbjct: 179 LYGVTGTLNMADLAGALAENPTVVTAFGFVLL-ALALKAAVFPLHTWLPRAYPAAPPVVT 237
Query: 245 VFLAGIMLKMGGYGCIRFLLPLF---PLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKK 301
L+G++ K+ Y IR +F + ++ L+L++++ SL ++ Q D+K+
Sbjct: 238 ALLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKR 297
Query: 302 LIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFA 361
++AYS+++ MGY+ +G+ + + +L H L+ ALF G I TR +
Sbjct: 298 VLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRRLSE 357
Query: 362 YGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGV-VLS 420
GL MP A V +++ +G+P TSGF+ ++ +++ + + + +L+
Sbjct: 358 LSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLA 417
Query: 421 ALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI---AVLTVFFGIYPVPI 472
LY L ++ + FG ++ L M+ P A+L++ GIY P+
Sbjct: 418 LLYFLRIWYRAFFGPPPPGSEAPKQEAPLG---MLAPSLALALLSLLLGIYAGPL 469
>gnl|CDD|181533 PRK08668, PRK08668, NADH dehydrogenase subunit M; Validated.
Length = 610
Score = 148 bits (376), Expect = 3e-36
Identities = 126/483 (26%), Positives = 215/483 (44%), Gaps = 32/483 (6%)
Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65
L+++ P +G + +YL GV + F+ +++ +
Sbjct: 3 LTLLLLTPLIGSVL----AYLLKKINEKIGVIGNALPLLFLI-KLYFTLKVGTGEKLTLF 57
Query: 66 EYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMV 125
+ F HL I L+V+ F F ++S F M A + L V
Sbjct: 58 FGGFKL-TFTLTHLSWFFAMISLLVI--FSVAFFMVSEKTKNDAYF--NMFALMSLAG-V 111
Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVM 185
+G FL+ D+L YIF+E F+++ G E A+ K+F+ + G+ ML+AI ++
Sbjct: 112 LGVFLANDLLTLYIFWEIMTFSSFMMV-PMGKKESRKASLKYFVLSAIGAYAMLYAIFLI 170
Query: 186 CWEKKTSSIIDLY-AMSKFPFSIQYWMWIAFFCSFAI-KIPMFPFHTWLPNAHVQAPTAG 243
+ T D+ + + + F +F + K +FP H W P+A+ +AP +
Sbjct: 171 YAKTGTFDFADISQGLINDTSTGFALIVFLFLLAFGVAKAGIFPLHVWAPDAYSEAPQSF 230
Query: 244 SVFLAGIMLKMGGYGCIRFLLPLFPLAS-------------QYFAPVIFFLSLIAIIYAS 290
S L+G + K+G YG FLL L+ L F ++ +L I+II +
Sbjct: 231 SAVLSGQLSKLGAYG---FLLVLYVLPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGT 287
Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350
L++++Q DIKKLIAYSS+A+ GY+ +G+ G G G +F + +H L F +
Sbjct: 288 LMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAV 347
Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF-QNSNTV 409
R T I GGL+ MP + +V ++ G+P SGF ++L+ ++ +
Sbjct: 348 IYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPIT 407
Query: 410 AVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYP 469
A +A FG + S LY V G + +K+ L + + +L V FG+ P
Sbjct: 408 AFMAFFGSIGSFLYVFRPLAGVFLGQLP-SDHKDVKEAPLPMLIPMAILVLLNVVFGVAP 466
Query: 470 VPI 472
+
Sbjct: 467 GLV 469
>gnl|CDD|183667 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 520
Score = 147 bits (374), Expect = 4e-36
Identities = 115/496 (23%), Positives = 219/496 (44%), Gaps = 28/496 (5%)
Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGV-ALGISTINFIFSLFV-WSVFDKG 58
+ + + + L L F++ S L G R + AL +S I I S+ + V+
Sbjct: 1 LAMDIVGLTPILLVLFAFLLPLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVY--S 58
Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSI--QENFREYMI 116
+ + + W VD + LL +LT + ++ S+ + + Y
Sbjct: 59 SNKPIVYLFGGWPAPI-GIVYEVDLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYT 117
Query: 117 AFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFLYTFFGS 175
L LE+ ++G L+ D ++ E I + ++ + + + AA K+ L G+
Sbjct: 118 LLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGT 177
Query: 176 IFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIA------------FFCSFAIKI 223
A+ + T ++ DL A + +F IK
Sbjct: 178 TLYFLALAFLYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKA 237
Query: 224 PMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQY------FAPV 277
+FP H WLP+AH AP+ S L+G+++ +G Y IRFL +F ++ +P+
Sbjct: 238 AIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSPI 297
Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337
+ L ++ I +L+ +VQ D+K+L+AYS+I+HMGY+ +GI G + G+ A+F +++H
Sbjct: 298 LIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHA 357
Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397
+ S LF GV TRDI GL MP + ++ ++ +G+P +GF + L
Sbjct: 358 IAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLL 417
Query: 398 VIMSVFQ-NSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVY 456
+ ++ + A++ +S + + + FG K + + K+ ++
Sbjct: 418 LFNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILV 477
Query: 457 PIAVLTVFFGIYPVPI 472
+A+ + GI + +
Sbjct: 478 -LALAVLILGILALFL 492
>gnl|CDD|180252 PRK05777, PRK05777, NADH:ubiquinone oxidoreductase subunit N;
Provisional.
Length = 476
Score = 136 bits (344), Expect = 2e-32
Identities = 106/490 (21%), Positives = 212/490 (43%), Gaps = 37/490 (7%)
Query: 1 MNLPFLSIVTFLP-----FLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVF 55
M + L+++ LP V ++L +++ R L + + LFV
Sbjct: 1 MTITSLNLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLA-LVALLFVLGAA 59
Query: 56 DKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYM 115
G + M L VDG ++ L L + +L + +++ R
Sbjct: 60 GGGTAFGGM--------------LVVDGFALFLKGLILLASLLALLLARPYLEDRGRGEF 105
Query: 116 IAFLVLESMVIGAFL---SLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYT 171
++ ++G + + D+L ++ E +P++ + + R + AA K+F+
Sbjct: 106 YLLVLF--ALLGMMVMVSANDLLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLG 163
Query: 172 FFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF---FCSFAIKIPMFPF 228
S F+L+ + ++ + S + + A K+ PF
Sbjct: 164 ALASGFLLYGMSLLYGATGSLSFAGIAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPF 223
Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYG-CIRFLLPLFPLASQYFAPVIFFLSLIAII 287
H W P+ + APT + FLA K+ + +R L+ F S+ + V+ +++ +++
Sbjct: 224 HMWTPDVYEGAPTPVTAFLATAP-KIAAFAVLLRLLVVAFGGLSEDWQQVLAIIAIASML 282
Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCV 347
+L ++ QT+IK+L+AYSSIAH GY+ +G+ +G G +F +L++ ++ F +
Sbjct: 283 VGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVI 342
Query: 348 GVIYDRLH-TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNS 406
++ + I + GL P A VM +F ++ G+P T+GF G+F V + +
Sbjct: 343 SLLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAG 402
Query: 407 NTVAVLASFGVVLSALYSLWLYRKVVFGV--SKCEKVQQLKDLSLRERCMVYPIAVLTVF 464
LA GV+ SA+ + Y +V+ + + + + ++ A+L +
Sbjct: 403 LW--WLAVIGVLNSAI-GAFYYLRVIKLMYFDEPPRDAPVNWPLSAGGAVLSVSALLVLV 459
Query: 465 FGIYPVPIRD 474
GI+P P+ D
Sbjct: 460 LGIFPQPLLD 469
>gnl|CDD|181405 PRK08376, PRK08376, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 135 bits (343), Expect = 2e-32
Identities = 126/529 (23%), Positives = 234/529 (44%), Gaps = 43/529 (8%)
Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWS------- 53
+LP L I+ +P G F + S LG R + A+ IS + I +L V+
Sbjct: 4 EHLPPLLII--IPLFGAFSMPIVSLLGGKAREIW--AVLISFLTLIVALLVFYEVWNNGT 59
Query: 54 -VFDKGRSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQEN-- 110
V+ G S + + + VD + ++ T ++ +L S ++ +
Sbjct: 60 IVYVLGAESPTLTLPFGSGGFPIRIIWEVDLFGAFMALIATIVSFLAVLYSISYMKHDTG 119
Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWG-GSERIYAAYKFFL 169
+Y L+LE ++G ++ D+ F++F E I + ++ E I A K+
Sbjct: 120 LDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMF 179
Query: 170 YTFFGSIFMLFAIVVMCWEKKTSSIIDL-YAMSKFPFSIQYWMWIAFFCSFAIKIPMFPF 228
S +L I ++ + T ++ L MS+ P + F A+K P
Sbjct: 180 VGSLASSMVLLGIALLYGQYGTLNMAYLAVKMSENPTVVAKIALALFIAGLAMKSGAVPV 239
Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGG-YGCIRFLLPLFPLASQYFAP--VIFFLSLIA 285
H WLP+A+ AP++ S L +++K G Y R L ++ A VI L +
Sbjct: 240 HMWLPDAYPAAPSSISAML--LVIKQAGLYALARVLFSIYGPAINLATVGWVIIILGCLT 297
Query: 286 IIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGM------------KSGVEGAMFQM 333
+ +++VQ D+K+L+AY S++ +GY+ +G+ G+ + + G ++ +
Sbjct: 298 MFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGLAALGDPAMASYGEIALAGGIYHI 357
Query: 334 LSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI 393
++H L + LF G + TR++ GGL MP+ + ++ A +GLP +GF
Sbjct: 358 VNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFA 417
Query: 394 GEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERC 453
++L+ S + + V+A G VL+ + ++ FG EKV +K+ +
Sbjct: 418 SKWLIYESSALFNPILGVIAMIGSVLTLASFVKVFHTAFFGPPS-EKVMNVKEP---PKP 473
Query: 454 MVYPIAVLTVF---FGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSVKG 499
M+ P+ +L + G++P I D P + +E+ GY +V G
Sbjct: 474 MLVPMLILAIAIIGMGLFPWQISDKLMAPAAKALEDQ---GGYISAVLG 519
>gnl|CDD|183663 PRK12663, PRK12663, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 497
Score = 134 bits (339), Expect = 5e-32
Identities = 101/397 (25%), Positives = 183/397 (46%), Gaps = 7/397 (1%)
Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM--VIGAFLSLDMLLFY 138
D +S L+V +F+ + + I+ + R Y +L M VIG+FL+ D+ Y
Sbjct: 75 GDSLSALMVTTASFVATAIMAYGFGDIEHSGRRYGFPPFILLLMAGVIGSFLTGDLFNLY 134
Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198
++FE LI FV+I + E++ A K+ + GS L I ++ T ++ +
Sbjct: 135 VWFEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIA 194
Query: 199 AMSKFPFSIQYWMWIA--FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGG 256
IA F +F +K +FPF WLP A+ T + A ++ K+G
Sbjct: 195 MRLNDMGDTATLTTIALLFLLAFGMKAALFPFM-WLPAAYHTPNTEVAALFAALLTKVGI 253
Query: 257 YGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTI 316
Y IR LFP + P++ ++ I ++ +L ++ DI+++ Y I+ +G++ +
Sbjct: 254 YALIRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILL 313
Query: 317 GIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVM 376
G+ G +G+ GA+F ++ +V +ALF G + R + GGL P + +
Sbjct: 314 GLALGTPAGINGAIFYLVHDMVVKTALFLIAGSLVRLTGYRSLQYLGGLYRKEPLFGALF 373
Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW-LYRKVVFGV 435
++ A GLP SGF G+ L++ N + + L +YSL+ ++ +G
Sbjct: 374 LILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAYWGD 433
Query: 436 SKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472
E+V R+ + +AV+ + GI P+
Sbjct: 434 KDGEEVNFKPIPLYRKLPLSI-LAVVVIAMGIAAEPL 469
>gnl|CDD|180602 PRK06521, PRK06521, hydrogenase 4 subunit B; Validated.
Length = 667
Score = 134 bits (339), Expect = 6e-32
Identities = 99/386 (25%), Positives = 175/386 (45%), Gaps = 35/386 (9%)
Query: 114 YMIAFLVLESMVIGAFLSLDMLLFYIFFEA-SLIPMFVIIGVWGGSERIYAAYKFFLYTF 172
+ FL SMV L+ D F + +E SL F++I +E A + + L
Sbjct: 118 FYNLFLA--SMV-LVLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLLMAH 174
Query: 173 FGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAF---FCSFAIKIPMFPFH 229
G++ +L A ++ E S D AM S +W + F F K + P H
Sbjct: 175 AGALAILLAFGLLARE---SGSYDFAAMRAAHLS-PFWASLVFLLALFGFGAKAGLVPLH 230
Query: 230 TWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYA 289
WLP AH AP+ S ++G+MLK+ YG +R + L ++ ++ L I+ +
Sbjct: 231 VWLPRAHPAAPSHVSALMSGVMLKVAIYGILRVVFDLLGAPGWWWGVLVLALGAISAVLG 290
Query: 290 SLVSMVQTDIKKLIAYSSIAHMGYV-------TIGIFSGMKS----GVEGAMFQMLSHGL 338
L ++ + D+K+L+AYS+I ++G + + I GM + A++ +L+H L
Sbjct: 291 VLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFIAYGMPLLAALALTAALYHLLNHAL 350
Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398
S LF G + TRD+ GGL+ MP A ++ +A LP +GF+ E+L+
Sbjct: 351 FKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEWLL 410
Query: 399 IMSVFQNS-------NTVAVLASFGVVLSALYSLWLYRKVVFGVSKC-----EKVQQLKD 446
+ S+ + +A+ + L+A + + K +G++ EK ++ +
Sbjct: 411 LQSLLSSPGLPQWGLKLAVPIAAAMLALTAALAAMCFVK-FYGITFLGRPRSEKAEEAHE 469
Query: 447 LSLRERCMVYPIAVLTVFFGIYPVPI 472
+ R + +A L V G+ P +
Sbjct: 470 VPRWMRAAMLLLAALCVLLGLLPGWV 495
>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 492
Score = 132 bits (334), Expect = 2e-31
Identities = 128/484 (26%), Positives = 223/484 (46%), Gaps = 30/484 (6%)
Query: 12 LPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEYY--H 69
LP L V + L S+ + C + IS I S F+ V S +I+Y
Sbjct: 5 LPILQVIIPLLSA-VVCALLKNRKLVKIISCIVVAVSFFIALVLFVQVYSGGVIKYSLGG 63
Query: 70 WIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE--------YMIAFLVL 121
W + L VD +S ++VL F+ ++S I N +E + AFL+
Sbjct: 64 WGPPY-GIELRVDILSATMLVLVNFIA---VMSVLYGIYPNRKEISVNKIPSFYSAFLLC 119
Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFA 181
++G +S D+ Y+F E S I +V++ + + + AA+++ + G+ F L
Sbjct: 120 LGGLLGILVSNDVFNIYVFLEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIG 179
Query: 182 IVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF---AIKIPMFPFHTWLPNAHVQ 238
I + T ++ D++ + + + I IK +FPFH WL A+ +
Sbjct: 180 IGFLYAITGTLNMGDMFLIIQ-DLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSE 238
Query: 239 APTAGSVFLAGIMLKMGGYGCIRFLLPLFP----LASQYFAPVIFFLSLIAIIYASLVSM 294
AP+ SVF +G K+ Y IR + +F + F V L+ +AI++ S++++
Sbjct: 239 APSFISVFFSGTSTKVMIYLIIRIVYDVFKANFVFTTLPFNNVFMILAALAIVFGSVLAI 298
Query: 295 VQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRL 354
+ DIK++ AYSSI+H+GY+ + + G+ A+ +++H +V SALF G I
Sbjct: 299 LSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHF 358
Query: 355 HTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLAS 414
T + L +MP+ + ++ +++ +G+P TSGF+ ++ I+ F SN L
Sbjct: 359 GTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWY-ILDAFIKSNAWIGLVV 417
Query: 415 F--GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPI---AVLTVFFGIYP 469
G LS +Y + + F E K MV I A+L++ GIYP
Sbjct: 418 LLVGSGLSVIYVWKIVEALYFESRMVESKANDKAFKT-PNAMVLCIWIMAILSIIVGIYP 476
Query: 470 VPIR 473
+P+
Sbjct: 477 IPLT 480
>gnl|CDD|181532 PRK08667, PRK08667, hydrogenase membrane subunit; Validated.
Length = 644
Score = 130 bits (329), Expect = 7e-31
Identities = 85/313 (27%), Positives = 151/313 (48%), Gaps = 18/313 (5%)
Query: 126 IGAFLSLDMLLFYIFFE-ASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVV 184
+G S + F F+E +L F+++ + E A +F+ T ++F++ I+V
Sbjct: 125 LGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIV 184
Query: 185 MCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGS 244
+ + + + I +++ F F IK + PFH WLP AH +P+ S
Sbjct: 185 LFIQTGSFE----LSPLGASAGILSLVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVS 240
Query: 245 VFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIA 304
++G+MLK+ YG +RFL+ + ++ +I I+ + + ++ + D+K L+A
Sbjct: 241 ALMSGVMLKVAVYGLVRFLMDVLS-PELWWGVLILLAGSISALLGVIYALKEHDLKGLLA 299
Query: 305 YSSIAHMGYVTIGIFSGMKSGVEG-----------AMFQMLSHGLVSSALFFCVGVIYDR 353
YSSI ++G + +GI + GV G A+F L+H L S LF G +
Sbjct: 300 YSSIENIGIILMGIGLYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFLTAGSVVHA 359
Query: 354 LHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQN-SNTVAVL 412
TR+I GGLV MP + + +V ++ LP +GF E L+ S FQ+ S ++
Sbjct: 360 TGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQSFSVADPLI 419
Query: 413 ASFGVVLSALYSL 425
+ A+++L
Sbjct: 420 KILLFSVLAIFAL 432
>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
Length = 479
Score = 125 bits (316), Expect = 3e-29
Identities = 109/451 (24%), Positives = 202/451 (44%), Gaps = 35/451 (7%)
Query: 6 LSIVTFL-PFLGVFVILFSSYLGCGRRS--FFGVALGISTINFIFSLFVWSVFDKGRSSF 62
L+++T L PF+G V+ F GRR+ + ++T+ + + + K +
Sbjct: 3 LALLTLLLPFIGALVVFFLP----GRRAAELGVLFAALTTLCMLSLAYAFYQAGKVAVTL 58
Query: 63 QMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMI------ 116
++ + L +D +S+L+ + L L S + RE+ +
Sbjct: 59 TLVNLGDVA----LFGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSPGNREHPVHEGTGR 114
Query: 117 --AFLVL-ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173
AFL+L + G S +L +FFE + + + +I + + + +A K L T
Sbjct: 115 YYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHI 174
Query: 174 GSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLP 233
GS+ + A + + T L A+S S++Y +++ + K PF++WLP
Sbjct: 175 GSLGLYLAAATLFLQTGT---FALSALSGLHGSLKYLVFLGILFAAWGKSAQLPFYSWLP 231
Query: 234 NAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLV 292
+A APT S +L A M+K+G Y R + + P+ V ++++ ++Y L+
Sbjct: 232 DAME-APTPASAYLHAASMVKVGVYIFARAIQSMGPIP-HVIGYVGAVMAIVTLLYGFLM 289
Query: 293 SMVQTDIKKLIAYSSIAHMGYVTIGI---FSGMKSGVEGAMFQMLSHGLVSSALFFCVGV 349
+ Q D+K+L+AYS+I +GY+ G+ G + +EG++ + +H S F G
Sbjct: 290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGA 349
Query: 350 IYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409
+ TR + G++ +P V V +A G+P +GF +F + + F+ S
Sbjct: 350 LSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEY 409
Query: 410 A------VLASFGVVLSALYSLWLYRKVVFG 434
VL V S + L + +VVFG
Sbjct: 410 WILLPAMVLLLIESVASFAWFLRWFGRVVFG 440
>gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 496
Score = 121 bits (307), Expect = 3e-28
Identities = 98/390 (25%), Positives = 188/390 (48%), Gaps = 13/390 (3%)
Query: 82 DGISILLVVLTTFLTPFCILSSWKSIQENFRE---YMIAFLVLESMVIGAFLSLDMLLFY 138
D + LLV+ ++ +T IL S+++I RE Y + L + + V GAFL+ D+ +
Sbjct: 76 DMFAALLVLTSSIITFLVILYSFQTIGIE-RERYYYYPSVLFMLAGVNGAFLTGDIFNLF 134
Query: 139 IFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLY 198
+FFE L+ +V+I + G ++ + K+ L S F + A+ ++ T ++ D+
Sbjct: 135 VFFEVMLMASYVLIVIGGTKIQLRESIKYVLINVVSSAFFVVAVAILYSVVGTLNMADIS 194
Query: 199 A----MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKM 254
+S + + I F FA K +FP + WLP ++ P A + ++ K+
Sbjct: 195 VKIAELSAGQTGLITVVAILFLFVFATKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKV 254
Query: 255 GGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV 314
G Y R F + + +I L+L+ II+ + ++ DIKK+I Y+ + +G +
Sbjct: 255 GVYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVI 314
Query: 315 TIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAV 374
+G+ +SG+ GA++ ++ +V +ALF +G++ T D+ GGL+ P
Sbjct: 315 LVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTTDLKKMGGLIKRYPVLGW 374
Query: 375 VMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLW-LYRKVVF 433
+ + ++ G+P SGF G+F ++ F+ V+ + L LYS+ ++ K +
Sbjct: 375 MFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGFW 434
Query: 434 GVSKCEKVQQLKDLSLRERCMVYPIAVLTV 463
G E + + + ++ P VL
Sbjct: 435 G----EPKGYDLNNKVPVKKLLLPAVVLVA 460
>gnl|CDD|181537 PRK08676, PRK08676, hydrogenase membrane subunit; Validated.
Length = 485
Score = 120 bits (303), Expect = 7e-28
Identities = 131/481 (27%), Positives = 223/481 (46%), Gaps = 18/481 (3%)
Query: 7 SIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIE 66
IV +L +F+ L L R +ALG + SL+V V + M
Sbjct: 1 IIVYYLLVALLFLRLGL--LSRSHRLLNALALGHGLWHLGLSLWVLLVLP--LPGYFMES 56
Query: 67 YYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVI 126
Y +ID+ + + + + +L L +LS+ + EN + + + F +L S++
Sbjct: 57 RYLFIDHLGIFVVLIASVVFILAALYARGYVDHLLSNGELDPENLKVFYLGFNLLLSVIT 116
Query: 127 GAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKF-------FLYTFFGSIFML 179
AF S ++ LF+IF E + + ++I + E I AA K+ ++ F G IF L
Sbjct: 117 FAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAMIFAFIGLIF-L 175
Query: 180 FAIVVMCWEKKTSSIIDLYAM-SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQ 238
F++ T + +L A S S+ ++ F F K + PFHTWLP A+ +
Sbjct: 176 FSLTRQALGTGTLNWTELAAHASLLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAK 235
Query: 239 APTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296
AP+ S L+G +L +G YG +R LL A Q F+ V+ L + +I A+ + Q
Sbjct: 236 APSVVSALLSGTVLNIGIYGILRLSALLRQSGAAEQ-FSNVLIGLGIFSIAVAAFSMLSQ 294
Query: 297 TDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHT 356
++KKLIA+SSI HMG + +GI G + +F ML+H LV S LFF G+++ R +
Sbjct: 295 RNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILH-RQYR 353
Query: 357 RDIF-AYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASF 415
D F + P A +++ + A +G+P F+ +F +++ + S + +
Sbjct: 354 SDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLL 413
Query: 416 GVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPIRDT 475
++L+A K VS+ + + L + + I L + G+Y P
Sbjct: 414 LLLLAASSFAIFLLKAFTRVSEGNADRPVFRTPLSMKLPIVIILALVLALGVYFPPGLAD 473
Query: 476 F 476
F
Sbjct: 474 F 474
>gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.
Length = 490
Score = 120 bits (303), Expect = 8e-28
Identities = 66/208 (31%), Positives = 109/208 (52%), Gaps = 4/208 (1%)
Query: 219 FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF-LLPLFPLASQYFAPV 277
F K+ +FP H WLP+AH +AP+ S L+G++L + Y +R+ +L + S + +
Sbjct: 224 FGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRL 283
Query: 278 IFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHG 337
+ L++++ A+ + Q DIK+L AYSSI HMG + + G G+ A+ ML+H
Sbjct: 284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHS 343
Query: 338 LVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFL 397
L SA+FF G + + TRDI GL+ P +M+ +A G+P FI EFL
Sbjct: 344 LTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFL 403
Query: 398 VIMSVFQNS---NTVAVLASFGVVLSAL 422
++ + + +L + +AL
Sbjct: 404 ILTAGLARGPLLIAILLLLLLTLAFAAL 431
>gnl|CDD|181406 PRK08377, PRK08377, NADH dehydrogenase subunit N; Validated.
Length = 494
Score = 119 bits (300), Expect = 2e-27
Identities = 87/393 (22%), Positives = 184/393 (46%), Gaps = 12/393 (3%)
Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEA 143
+ +L++ + +F+ L + + E +Y + FL+L G + D+ ++F E
Sbjct: 82 LFVLIIAIVSFIMSIFSLKAVEV--EPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEI 139
Query: 144 SLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKF 203
+ I + + E A+ K+ + GS F L + ++ T ++ + ++
Sbjct: 140 TAITAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIAQLAGT 199
Query: 204 --PFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIR 261
P Q + + F A++ +FP + W P+A+ AP +V + ++K G Y R
Sbjct: 200 IDPTVAQVGLALLIF-GLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMAR 258
Query: 262 FLLPLFPLAS-QYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320
L + ++ ++ + + +A L ++ Q ++K++IAYSSI +G + + +
Sbjct: 259 ILYLMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALAL 318
Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380
G ++GV+ +F M++H +V + LF VG + L +I + GL MP A+ + +
Sbjct: 319 GTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGA 378
Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNT-VAVLASFGVVLSALYSLWLYRKVVFGVSKCE 439
++ +G+P + F +F +I++ T L V+ A+Y L ++ + E
Sbjct: 379 LSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLI-HTMWFKGEGE 437
Query: 440 KVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472
++++ + + ++ +A L V GIYP P
Sbjct: 438 RIRENAAIGI----ILLLLAALIVVIGIYPTPF 466
>gnl|CDD|130019 TIGR00944, 2a6301s04, Multicomponent K+:H+antiporter.
Length = 463
Score = 114 bits (288), Expect = 4e-26
Identities = 81/353 (22%), Positives = 150/353 (42%), Gaps = 6/353 (1%)
Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLV--LESMVIGAFLSLDMLL 136
L +D S LL+ T+ + L S + LV L + + GAFL+ D+
Sbjct: 70 LVLDRFSALLLCTTSIIALAVQLYSMARWGTARERHHYYSLVQFLLAGLNGAFLTGDLFN 129
Query: 137 FYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196
++FFE L + ++ ++ K+ S + + ++ T ++ D
Sbjct: 130 LFVFFEMMLAASYGLLVHGSTKIQLKEGLKYIAVNLVSSALFVIGVSLLYGVAGTLNMAD 189
Query: 197 LY----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIML 252
L A+ + F +K MFP WLP A+ P + ++
Sbjct: 190 LSTKLAALEPRSRGLVEMGSALLGVVFLVKAGMFPLSFWLPTAYYAPPPPIAAVFGALLT 249
Query: 253 KMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312
K+G Y IR L +F A+ + + L+++ II+ + + ++ K+ Y+ + +G
Sbjct: 250 KVGIYAIIRLHLLVFGTAAGFGHEWLVTLAMLTIIFGGIGVLAYQNMGKIAGYNVLVAVG 309
Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372
+ G+ G + GA++ ++ L ALF +G++ T + AYGGL+ P
Sbjct: 310 VILAGVALGTDGMLAGAIYYLVHDMLTKGALFLLIGLVIRGTGTATLEAYGGLIKRYPVL 369
Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSL 425
+ ++ G+P SGFIG+F +I +F + V L+ LYS+
Sbjct: 370 GWCFFICALSLAGIPPLSGFIGKFAIISGLFDMGDWTYVTLLLLSSLAVLYSV 422
>gnl|CDD|180900 PRK07234, PRK07234, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 470
Score = 113 bits (284), Expect = 2e-25
Identities = 84/393 (21%), Positives = 164/393 (41%), Gaps = 44/393 (11%)
Query: 8 IVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMIEY 67
+ LPFL F I L R +ALG++ ++ +++L + V +++
Sbjct: 7 VWIALPFLLGFAIYLLPKL---DR---NLALGMAIVSAVYALGL--VASMVPLELTLLDN 58
Query: 68 YHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIG 127
+ L D +S ++ +T I W+S + F Y ++ S+
Sbjct: 59 F-------GVTLRADALSGYFILTNALVTLAVIFYCWESAKTRFF-YAQLLILHGSVNA- 109
Query: 128 AFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMC 186
AF+ D++ Y+ E I F+++ + ++R I+ ++ Y+ +F L V++
Sbjct: 110 AFVCADLISLYVALEVLSIATFLLV-AYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVY 168
Query: 187 WEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246
T + L F++ +K +F WLP H +A S
Sbjct: 169 QANGTFAFSGLATADPEAFAL-------IALGLLVKGGIFVSGLWLPLTHSEAEPPVSAL 221
Query: 247 LAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYS 306
L+G+++K G + +R L + L ++ + + L ++++ D+K+++A+S
Sbjct: 222 LSGVVVKAGVFPLVRCALDVPGL-----DLIVRIFGVGTALLGVLFALLEKDLKRMLAFS 276
Query: 307 SIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLV 366
+I+ +G++ G L+HGLV S LF C G + R T I G
Sbjct: 277 TISQLGFILAAPLVG--------GLYALAHGLVKSTLFLCAGALPSRNFTELISQMLG-- 326
Query: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399
+ M F++A G P +GF+ + L +
Sbjct: 327 -IGKWIPLTMASFSIA--GFPLLAGFVSKVLTL 356
>gnl|CDD|162123 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter.
Length = 793
Score = 112 bits (282), Expect = 2e-25
Identities = 129/526 (24%), Positives = 225/526 (42%), Gaps = 44/526 (8%)
Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTINFIFSLFVWSVFDKGRSSFQMI 65
S PF + + +F L I + F+++L ++ G I
Sbjct: 2 HSAFILPPFAASLIPILYPSDQRIHIGWF--VLAIPLVCFLYTLGLYPYTASGGVLHYTI 59
Query: 66 EYYHWIDYF-CSYHLGVDGISILLVVLTTFLTPFCILSS--WKSIQENFREYMIAFLVLE 122
+ W+ ++ L +DG+++L +L T + +L S + S +E + L
Sbjct: 60 D---WVPELGLNFTLYMDGLALLFSLLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFM 116
Query: 123 SMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFA 181
++G LS +++L Y+F+E + I F++I W Y A K T FG + ML
Sbjct: 117 GAMLGVVLSDNLILLYVFWELTSIVSFLLISYWHHRAHSRYGAQKSLTITVFGGLAMLGG 176
Query: 182 IVVMCWEKKTSSIIDLY----AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237
++++ + SI + A+ P M + +F K FPFH WLP+A +
Sbjct: 177 LILLGKITGSFSIDAVIASADAIRNSPLFG-TAMVLVLLGAFT-KSAQFPFHIWLPDA-M 233
Query: 238 QAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQ 296
+APT S +L + M+K G Y RF P+F +F V LI +++ S ++ Q
Sbjct: 234 EAPTPVSAYLHSATMVKAGLYLLARFT-PVFAGTEAWFWIVGLA-GLITLLWGSYFAIFQ 291
Query: 297 TDIKKLIAYSSIAHMGYVT----IGIFSGMKSGVE---------GAMFQMLSHGLVSSAL 343
D+K ++A+S+I+ +G + +G S G + A+F +++H +L
Sbjct: 292 QDLKGILAFSTISQLGLIMVLLGLGSPSYHYQGDDSKIYALAAVAAVFHLINHATFKGSL 351
Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF 403
F G+I TRDI GGL H MP + M+ + A G+P +GF+ + +
Sbjct: 352 FMAAGIIDHETGTRDIRKLGGLFHIMPITFTLAMIASAAMAGVPPFNGFLSKEMFFAEAI 411
Query: 404 QNS-----NTVA------VLASFGVVLSALYSLWLYRKVVFGVSKCEKV-QQLKDLSLRE 451
+TV +A+ V + +YSL V FG K E + ++ +
Sbjct: 412 TAHLVNPFDTVTLGYLFPYVATVASVFTFVYSLRFIHGVFFGRPKPEDLPRKPHEPPRWM 471
Query: 452 RCMVYPIAVLTVFFGIYPVPIRDTFSVPLSSIIENYTLKTGYSDSV 497
+ +L + FG++P + P I + YS SV
Sbjct: 472 LASPDILVLLVLVFGLFPAQLTGPIIEPAVLSILREGVPDDYSLSV 517
>gnl|CDD|183665 PRK12665, PRK12665, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 521
Score = 110 bits (277), Expect = 8e-25
Identities = 92/363 (25%), Positives = 185/363 (50%), Gaps = 15/363 (4%)
Query: 79 LGVDGISILLVVLTTFLTPFCILSSWKSIQENFRE---------YMIAFLVLESMVIGAF 129
L VD +S L++V+++ + +L +I + R+ ++ +L+L + V AF
Sbjct: 72 LVVDRLSALMLVVSSVVL-LAVL--VYAIGQGIRDGDEEQPVSIFLPTYLILVAGVSNAF 128
Query: 130 LSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEK 189
L+ D+ Y+ FE L+ +V++ + + R+ A + + + S+ L I ++
Sbjct: 129 LAGDLFNLYVGFEILLVASYVLLTLGATAARVRAGVTYVMVSMVSSLLFLIGIALVYAAT 188
Query: 190 KTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248
T ++ DL + + P + ++ +F IK +FP WLP+++ AP + A
Sbjct: 189 GTLNMADLAVRLDELPSGTRTALFAVLLVAFGIKAAVFPLSFWLPDSYPTAPAPVTAVFA 248
Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308
G++ K+G Y IR LFP ++ ++L+ ++ L ++ Q+DIK+L++++ +
Sbjct: 249 GLLTKVGVYAIIRTHTLLFP--GGGLDTLLMVVALLTMVVGILGAIAQSDIKRLLSFTLV 306
Query: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHN 368
+H+GY+ GI +G+ GA++ + H V + LF VG+I + + + GGL
Sbjct: 307 SHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGSSSLRRLGGLAKA 366
Query: 369 MPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLY 428
P AV+ V + G+P SGFIG+ ++ + ++ +A G V+++L +L+
Sbjct: 367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAEDGTWLAWALVAGGVVTSLLTLYAV 426
Query: 429 RKV 431
+V
Sbjct: 427 ARV 429
>gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 800
Score = 109 bits (275), Expect = 1e-24
Identities = 103/395 (26%), Positives = 186/395 (47%), Gaps = 50/395 (12%)
Query: 83 GISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFE 142
+ I L+ + F LSS K F Y+ F+ SM IG LS + +L Y+F+E
Sbjct: 84 SLIISLIGIAVFFYATQYLSSRKDNLPRFYFYLTLFMF--SM-IGIVLSDNTILMYVFWE 140
Query: 143 ASLIPMFVIIGVW-GGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMS 201
+ + F++I W + + A + F+ T FG + +L +++ T++I ++ +
Sbjct: 141 LTSVSSFLLISYWYNNGDSQFGAIQSFMITVFGGLALLVGFIMLYIMTGTNNITEILGQA 200
Query: 202 K-------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLK 253
F I ++ AF K FPFH WLP A + APT S +L + M+K
Sbjct: 201 DHIKNHGLFIPMIFMFLLGAF-----TKSAQFPFHIWLPRA-MAAPTPVSAYLHSATMVK 254
Query: 254 MGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY 313
G + RF PL L++ Y V F + LI +++ S+ ++ Q D+K ++AYS+I+ +G
Sbjct: 255 AGIFLLFRFT-PLLGLSNMYIYIVTF-VGLITMLFGSITALKQWDLKGILAYSTISQLGM 312
Query: 314 VT--IGIFSGMKSGVEGAM------------FQMLSHGLVSSALFFCVGVIYDRLHTRDI 359
+ +GI G + A+ F +++H + ALF VG+I TRDI
Sbjct: 313 IMAMVGIGGGYAQHQQDAIASIYVFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDI 372
Query: 360 FAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSN------------ 407
G+ P+ +VM + ++ G+P +GF+ + + + ++ Q
Sbjct: 373 RILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLSQFSLISMIII 432
Query: 408 -TVAVLASFGVVLSALYSLWLYRKVVFGVSKCEKV 441
+ V+AS + + Y+L++ ++V +G +
Sbjct: 433 VFIGVIAS---IFTFTYALYMVKEVFWGKYDSKVF 464
>gnl|CDD|180632 PRK06589, PRK06589, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 489
Score = 109 bits (274), Expect = 2e-24
Identities = 91/380 (23%), Positives = 178/380 (46%), Gaps = 21/380 (5%)
Query: 59 RSSFQMIEYYHWIDYFCSYHLGVDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAF 118
R+ F+++++ +Y HL G+ LL L FL +L + K + N + F
Sbjct: 64 RAQFELMDFG---NYSIGLHLEPLGLIFLL--LIGFLWICALLYTPKYLAINNIDSSSRF 118
Query: 119 L--VLESMVIGAFLSL--DMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFG 174
L +++IG ++L D+ ++ +E I +IG + + YK+
Sbjct: 119 LFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMIS 178
Query: 175 SIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPN 234
++ +LF V+ KT ++ D + F + + + F A K +FP H+WLP
Sbjct: 179 AL-LLFLPAVILIYTKTGNL-DFVSGGLFSKNQSIILLLMFIYGIA-KTAIFPVHSWLPA 235
Query: 235 AHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLAS-QYFA---PVIFFLSLIAIIYAS 290
A V ++ A I++K G + + LL +F L+ Q + F+ +++I Y+S
Sbjct: 236 AMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPIVSIFYSS 295
Query: 291 LVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVI 350
L ++ +IKK++AYS+I+ + + F + A+ ++SH LF+ +G I
Sbjct: 296 LKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSI 355
Query: 351 YDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNT-- 408
Y + G + P + ++ + +++ +G+P SGFI +FL++++ + +
Sbjct: 356 YSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWL 415
Query: 409 ---VAVLASFGVVLSALYSL 425
V ++ +LSALY L
Sbjct: 416 SIIVMLVVIASSILSALYLL 435
>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
oxidoreductase, chain L. This model describes the 12th
(based on E. coli) structural gene, L, of bacterial NADH
dehydrogenase I, as well as chain 5 of the corresponding
mitochondrial complex I and subunit 5 (or F) of the
chloroplast NAD(P)H-plastoquinone dehydrogenase complex.
Length = 617
Score = 106 bits (268), Expect = 1e-23
Identities = 125/506 (24%), Positives = 215/506 (42%), Gaps = 45/506 (8%)
Query: 6 LSIVTFLPFLGVFVILFSSYLGCGRRSFFGVALGISTI-----NFIFSLFV-WSVFDKGR 59
+ ++ FLP +G G R A GI I + S FV G+
Sbjct: 3 IFLIVFLPLIG------FLIAGLFGRRIGKRASGIIGIGSVGVSAALSAFVFVDFLLNGQ 56
Query: 60 SSFQMIEYYHWI---DYFCSYHLGVDGIS-ILLVVLTTFLTPFCILSSW----KSIQENF 111
+ WI + + L +D +S +L+V+T I S F
Sbjct: 57 GEAFTQSLFPWISVGGFQVDFGLRLDQLSLTMLIVVTGVSLLVHIYSIGYMAHDEGYSRF 116
Query: 112 REYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERI-YAAYKFFLY 170
Y+ F M++ L+ + L + +E + +++IG W AA K F+
Sbjct: 117 FAYLSLFTFSMLMLV---LADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVV 173
Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSF--AI-KIPMFP 227
G +L I ++ W T + +++A+ P + + + F A+ K P
Sbjct: 174 NRVGDFGLLLGIFLIFWYFGTLNFQEVFAL--APGADFSALTLICLLLFIGAMGKSAQLP 231
Query: 228 FHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAI 286
HTWLP+A ++ PT S + A M+ G Y R PLF L+ ++ + I
Sbjct: 232 LHTWLPDA-MEGPTPVSALIHAATMVTAGVYLVAR-TSPLFELSPTALY-LVTIIGAITA 288
Query: 287 IYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEG---AMFQMLSHGLVSSAL 343
++A+ V++VQ DIK+++AYS+ + +GY+ + GV A+F +++H + L
Sbjct: 289 LFAATVALVQNDIKRILAYSTCSQLGYMF------LALGVGAYAAAIFHLMTHAFFKALL 342
Query: 344 FFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSV 402
F G VI+ H +DI GGL MP + ++ ++A +G PG +GF + L++ +
Sbjct: 343 FLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAA 402
Query: 403 FQNSNT--VAVLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAV 460
F + + V G L+A YS L G + E + L + +AV
Sbjct: 403 FASGTHSFLFVAGLIGAFLTAFYSFRLIFMTFHGKKRHEADSHPHESPLVMLLPLIVLAV 462
Query: 461 LTVFFGIYPVPIRDTFSVPLSSIIEN 486
+VF G + VP+ + L + E
Sbjct: 463 GSVFAGFFIVPLFEFLKGVLPTSAEP 488
>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
oxidoreductase, chain N. NADH-plastoquinone
oxidoreductase is used for the complex and this protein
is designated as subunit 2 or B. This model also
includes a subunit of a related complex in the archaeal
methanogen, Methanosarcina mazei, in which F420H2
replaces NADH and 2-hydroxyphenazine replaces the
quinone.
Length = 468
Score = 106 bits (266), Expect = 2e-23
Identities = 90/396 (22%), Positives = 182/396 (45%), Gaps = 15/396 (3%)
Query: 87 LLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFL--SLDMLLFYIFFEAS 144
L+++L+T L F LS +E ++ L+L +++ L S D+L Y+ E
Sbjct: 77 LILLLSTLLLFFFALSY--FSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQ 134
Query: 145 LIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL--YAMS 201
+ +V+ + S A K+F+ F S +LF I ++ + + DL + +
Sbjct: 135 SLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSN 194
Query: 202 KFPFSIQYWMWIAFFCS-FAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260
+ I F K+ PFH W+P+ + APT + F + + +
Sbjct: 195 LGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVLL 254
Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320
R + S + + ++++++ + ++ Q +K+L+AYSSI+H+GY+ IG+ +
Sbjct: 255 RLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLA 314
Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD--IFAYGGLVHNMPRYAVVMMV 378
G G++ +F + + L+S F + ++ R I + GL P A+++++
Sbjct: 315 GTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKTNPLIAILILI 374
Query: 379 FTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV--FGVS 436
F + G+P +GF G+F V ++ ++ L + +L+++ S + Y +VV
Sbjct: 375 FMFSLAGIPPLAGFFGKFYVFFALLKSG---LYLLAVIAILTSVISAFYYLRVVKVMYFD 431
Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVPI 472
K E+ S + ++ A+ VF G++P I
Sbjct: 432 KPERRIFSNPQSKAQSLLLSISALFIVFLGLFPSLI 467
>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 789
Score = 103 bits (259), Expect = 8e-23
Identities = 107/405 (26%), Positives = 182/405 (44%), Gaps = 40/405 (9%)
Query: 106 SIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW-GGSERIYAA 164
S +E+ Y L+ +IG S + + +IF+E + I F++IG W E +Y A
Sbjct: 105 SHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGA 164
Query: 165 YKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQ--------YWMWIAFF 216
K L T G +FM +++ + D+ + + I+ I F
Sbjct: 165 TKSLLITAGGGLFMFAGFLLL---HVITGTYDIATILQDSELIENIKGHPLFLITLILIF 221
Query: 217 CSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFA 275
A K PF+ WLPNA ++APT S FL + M+K G Y R + P+F +F
Sbjct: 222 IGAAAKSAQGPFYIWLPNA-MEAPTPVSAFLHSATMVKAGVYLVAR-IHPIFSGTEAWFI 279
Query: 276 PVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGY-VTIGIFSGMKS---GVEGAMF 331
++ +I ++ A ++ QTDIK ++AYS+I+ + Y +T+ ++ GV A F
Sbjct: 280 -LVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHEPGLGVAAATF 338
Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391
+L+H + LF G++ TRDI GGL MP +V + +A G+P +G
Sbjct: 339 HLLNHATFKACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNG 398
Query: 392 FIGEFLVIMSVFQNSNTVA--------VLASFGVVLSALYSLWLYRKVVFGVSKCEKVQQ 443
F+ + + + + + +A G V + YS+ L + G + +
Sbjct: 399 FLSKEMFYETSVEMGALIGGPFTIIIPAVAVLGGVFTFAYSIKLIDGIFLGERTHDHLPH 458
Query: 444 LKDLSLRERCMVYP---IAVLTVFFGIYPVPIRDTFSVPLSSIIE 485
+ M+ P +A L + FG+ P S+P+ +IIE
Sbjct: 459 --HIHEAPYVMLIPAAFLAGLVILFGLVP-------SIPIHNIIE 494
>gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 761
Score = 92.3 bits (230), Expect = 2e-19
Identities = 95/353 (26%), Positives = 171/353 (48%), Gaps = 19/353 (5%)
Query: 81 VDGISILLVVLTTFLTPFCILSS---WKSIQENFREYMIAFLVLESMVIGAFLSLDMLLF 137
+DG+S+ +L T + +L + K + R Y L + SM +G LS +++
Sbjct: 62 LDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASM-LGLVLSDNLITL 120
Query: 138 YIFFEASLIPMFVIIGVWGGSERIY-AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIID 196
++F+E + I F++IG E AA + L T G + +L ++++ T S+ +
Sbjct: 121 FVFWELTSITSFLLIGFNHEREAARRAALQALLVTGGGGLALLAGLILLGNVTGTYSLSE 180
Query: 197 LYAM------SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AG 249
L A +I + F K FPFH WLPNA ++APT S +L +
Sbjct: 181 LLASGDVIREHPLYLAILLLVLGGAF----TKSAQFPFHFWLPNA-MEAPTPVSAYLHSA 235
Query: 250 IMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIA 309
M+K G Y R L P+ + + F + ++ +L+++ QTD+K ++AYS+++
Sbjct: 236 TMVKAGIYLLAR-LNPVLGGTPLWQTILPLF-GGLTMLTGALLAVRQTDLKLILAYSTVS 293
Query: 310 HMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNM 369
+G + + + G + ++ A+ +++H L ALF G+I TRDI GGL M
Sbjct: 294 ALGTLVMLLGLGSELAIKAAVLFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAM 353
Query: 370 PRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVLSAL 422
P A ++ ++ GLP GF+ + L+ ++ + +L V+ +AL
Sbjct: 354 PITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILTVAAVLGNAL 406
>gnl|CDD|183650 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 962
Score = 92.4 bits (230), Expect = 3e-19
Identities = 91/348 (26%), Positives = 157/348 (45%), Gaps = 57/348 (16%)
Query: 118 FLVLESMVIGAFLSL----DMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFF 173
F +L + + A L L D+++ ++ +E + F +I G + + + TFF
Sbjct: 112 FYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSGSGGEA-GSIRTLILTFF 170
Query: 174 GSIFMLFAIVVMC----------------WEKK---TSSIIDLYAMSKFPFSIQYWMWIA 214
G + +L A+ + W +K T+ + L A++ F S Q
Sbjct: 171 GGLTLLAAVAIAATQTGTTSLSGILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQ------ 224
Query: 215 FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQY 273
FPFH WLP A A T S FL A ++K G Y +RF P+F + +
Sbjct: 225 -----------FPFHFWLPEAMA-AITPVSAFLHAAAVVKAGIYLLLRFS-PVFHDVAVW 271
Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYV--TIGIFSGMKSGVEGAMF 331
+I + +I + ++ ++ +TD+KKL AYS+++ +G++ TIG+ G + A+
Sbjct: 272 NWLLII-VGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGV--GTPFALTAAVV 328
Query: 332 QMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANM-GLPGTS 390
L+H L S+LF +GV+ + TRDI G L MP + V + +M +P
Sbjct: 329 HTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLWRRMP-FTFVSVTIAALSMAAVPPLF 387
Query: 391 GFI---GEFLVIMSV-FQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434
GF+ G + N+ V +L G L A+++ ++V G
Sbjct: 388 GFVSKEGMLTAFLEAPGGNAGVVLLLV--GAALGAVFTFAYSARLVLG 433
>gnl|CDD|183668 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 581
Score = 91.9 bits (229), Expect = 4e-19
Identities = 85/395 (21%), Positives = 165/395 (41%), Gaps = 28/395 (7%)
Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIF 140
VD +S + ++ + ++ + ++ +++ A L + S +GA + D+L ++F
Sbjct: 65 VDKLSRVFGLIFGIMAFIGVIYALHV--KDPGQHVAALLYVGS-ALGAVFAGDLLTLFVF 121
Query: 141 FEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAM 200
+E ++ G + A +++ L G + +L I++ E + +
Sbjct: 122 WELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGVLLLAGILLHYAETGSFAFG----- 176
Query: 201 SKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCI 260
+ W+ F + P H WLP+A+ +A GSVFL+ K Y
Sbjct: 177 AIAGLGGTAA-WLILI-GFGVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALA 234
Query: 261 RFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFS 320
R FP ++ + +++ + +A L + D+++L++Y ++ +GY+ GI
Sbjct: 235 R----AFP-GTELLIYIGAAMAVYGVFFALL----ENDLRRLLSYHIVSQVGYMVAGIGI 285
Query: 321 GMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFT 380
G + GA+ +H L LF G + R T + GGL +MP A+ +V
Sbjct: 286 GTALAINGAVAHAFNHILYKGLLFMSAGAVLYRTGTEKLTELGGLYRSMPLTALFCLVGA 345
Query: 381 MANMGLPGTSGFIGEFLVIMSVFQNSNTVA----VLASFGVVLSALYSLWLYRKVVFGVS 436
++ P SGF+ + ++I + ++ +LAS G L L + FG
Sbjct: 346 LSISAFPLFSGFVSKSMIISAAGEDHYVWVWLLLLLASAGTFLHFGIKLPYF--AFFGGD 403
Query: 437 KCEKVQQLKDLSLRERCMVYPIAVLTVFFGIYPVP 471
+V KD + A L + G+YP
Sbjct: 404 SGLRV---KDAPRNMLVAMGIAAFLCIAIGVYPQA 435
>gnl|CDD|183645 PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A;
Reviewed.
Length = 800
Score = 91.5 bits (228), Expect = 5e-19
Identities = 111/399 (27%), Positives = 193/399 (48%), Gaps = 50/399 (12%)
Query: 81 VDGISILLVVLTTFLTPFCILSSWKSIQE------NFREYMIAFLVLESMVIGAFLSLDM 134
VDG+S+L +L T + +L S + + NF Y++ F+ ++G LS ++
Sbjct: 76 VDGLSLLFALLITGIGSLVVLYSIYYLSKKKEQLGNFYVYLLLFM---GAMLGVVLSDNL 132
Query: 135 LLFYIFFEASLIPMFVIIGVWGGSER-IYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSS 193
++ Y+F+E + I F++I W E Y A K L T FG + ML +++ + S
Sbjct: 133 IVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITVFGGLSMLGGFILLYIMTGSFS 192
Query: 194 IIDLYAMSK-------FPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVF 246
I ++ A + F ++ + AF K FPF+ WLP+A ++APT S +
Sbjct: 193 IREMIANADEIQNSPLFIPAMILILLGAF-----TKSAQFPFYIWLPDA-MEAPTPVSAY 246
Query: 247 L-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAY 305
L + M+K G Y RF P+F + +F V LI + + SL ++ QTD+K ++A+
Sbjct: 247 LHSATMVKAGIYLVARFT-PIFAGSQVWFWTVTLV-GLITLFWGSLNAVKQTDLKGILAF 304
Query: 306 SSIAHMGYVT--IGI------FSGMKS-----GVEGAMFQMLSHGLVSSALFFCVGVIYD 352
S+++ +G + +GI + G S + A+F +++H +LF VG++
Sbjct: 305 STVSQLGLIMSLLGIGAASLHYQGDDSKIYAAAITAAIFHLINHATFKGSLFMIVGIVDH 364
Query: 353 RLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ-------N 405
TRDI GGL+ MP + ++ ++ GLP +GF+ + + S+ +
Sbjct: 365 ETGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLNATEANLFS 424
Query: 406 SNTVAVL----ASFGVVLSALYSLWLYRKVVFGVSKCEK 440
+T VL A V + +YS+ K FG K E+
Sbjct: 425 LDTWGVLFPVIAWVASVFTFVYSIIFIFKTFFGKYKPEQ 463
>gnl|CDD|181206 PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.
Length = 593
Score = 90.7 bits (225), Expect = 7e-19
Identities = 58/214 (27%), Positives = 109/214 (50%), Gaps = 12/214 (5%)
Query: 211 MWIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLA 270
+W+ F + + P H W+P AH A + + +++K+G G + L L A
Sbjct: 182 IWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVVMKIGLLGILTLSL-LGGNA 240
Query: 271 SQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSG--------- 321
++ + L +I L ++++ +I++L+AY ++ ++G + +G+ +G
Sbjct: 241 PLWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQP 300
Query: 322 --MKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVF 379
+ G+ G ++ +L+H L S LF G ++ R RDI GG+ MP ++ M+V
Sbjct: 301 ALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVG 360
Query: 380 TMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLA 413
MA LP +GF GE+++ S F+ SN+ A +A
Sbjct: 361 LMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVA 394
>gnl|CDD|180633 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
Reviewed.
Length = 624
Score = 90.6 bits (226), Expect = 9e-19
Identities = 120/455 (26%), Positives = 211/455 (46%), Gaps = 38/455 (8%)
Query: 1 MNLPFLSIVTFLPFLGVFVILFSSYLGCGRR--SFFGVALGISTI--NFIFSLFVWSVFD 56
MNL +L + LP +G ++ GRR + +G + + + SL V+ F
Sbjct: 2 MNLLWLIV--LLPLIGALILGLF-----GRRIGEKWAHLVGTGLVGLSALLSLVVFFDFL 54
Query: 57 KGRSSFQMIEYYHWI---DYFCSYHLGVDGISILLVVLTTFLTPFC-ILSSW-KSIQENF 111
G + WI D+ + L VDG+S ++V+ T ++ I S + E +
Sbjct: 55 LGGGRAFSQTLWTWISVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHDEGY 114
Query: 112 REYMIAFLVL--ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW-GGSERIYAAYKFF 168
R + A+L L SM++ LS ++L + +E + +++IG W AA K F
Sbjct: 115 RRFF-AYLNLFTFSMLM-LVLSDNLLQLFFGWEGVGLCSYLLIGFWYKKPSAGAAAMKAF 172
Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWM--WIAFFCSFAI--KIP 224
+ G + + I ++ E + + +++A + F + + I K
Sbjct: 173 IVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFGLGWSALTLICLLLFIGAMGKSA 232
Query: 225 MFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLAS--QYFAPVIFFL 281
FP HTWLP+A ++ PT S + A M+ G Y R + PLF L+ F + +
Sbjct: 233 QFPLHTWLPDA-MEGPTPVSALIHAATMVTAGVYLVAR-MSPLFELSPEALLF---VAIV 287
Query: 282 SLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSS 341
+ ++A+ + +VQTDIK+++AYS+++ +GY+ + + G A+F +++H +
Sbjct: 288 GAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVG---AYAAAIFHLMTHAFFKA 344
Query: 342 ALFFCVG-VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIM 400
LF G VI+ H +DI GGL MP ++ T+A +G+P +GF + ++
Sbjct: 345 LLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILE 404
Query: 401 SVFQNSNTVA-VLASFGVVLSALYSLWLYRKVVFG 434
+ F N + V G L+A YS L V G
Sbjct: 405 AAFANGHINLFVAGLVGAFLTAFYSFRLIFLVFHG 439
>gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 89.2 bits (222), Expect = 2e-18
Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 22/313 (7%)
Query: 126 IGAFLSLDMLLFYIFFEASLIPMFVIIGVWGG---SERIYAAYKFFLYTFFGSIFMLFAI 182
G S ++LL Y+F+E + + F++IG + S R AA + L T G + ML I
Sbjct: 120 FGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAASRR--AALQALLVTTAGGLAMLVGI 177
Query: 183 VVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA---IKIPMFPFHTWLPNAHVQA 239
+++ T + +L A ++ +A K + PFH WLP A + A
Sbjct: 178 IILGQAAGTYRLSELLADPPTGPAVS----VAVVLILVGALSKSAIVPFHFWLPGA-MAA 232
Query: 240 PTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTD 298
PT S +L A M+K G Y R L P F + P + L L ++ ++ Q D
Sbjct: 233 PTPVSAYLHAAAMVKAGIYLVAR-LAPGFA-DVPVWRPTVLVLGLATMLLGGWRALRQHD 290
Query: 299 IKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358
+K ++AY +++ +G++T+ + G + + +L+H L +ALF VG+I TRD
Sbjct: 291 LKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTRD 350
Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVF--QNSNTVAVLASFG 416
I GL P AVV + + GLP GF+ + + +V + G
Sbjct: 351 IRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVLAG 410
Query: 417 VVL-SAL---YSL 425
+VL S L YSL
Sbjct: 411 IVLGSILTVAYSL 423
>gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 948
Score = 88.3 bits (220), Expect = 4e-18
Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 18/220 (8%)
Query: 226 FPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLP-LFPLAS---QYFAPVIFF 280
FPFH WLP+A + APT S +L + M+K G FLL L+P+ + ++F V
Sbjct: 224 FPFHFWLPHA-MAAPTPVSAYLHSATMVKAG-----VFLLARLWPVLAGTEEWFWIVGG- 276
Query: 281 LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVS 340
LI ++ + ++ Q D+K L+AYS+I+H+G +T+ + G A+F +++H
Sbjct: 277 AGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGSPLAAVAAIFHIINHATFK 336
Query: 341 SALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFI------G 394
++LF G+I TRD+ GL MP A + MV A G+P +GF+
Sbjct: 337 ASLFMAAGIIDHETGTRDMRRLSGLRRLMPITATLAMVAAAAMAGVPLLNGFLSKEMFFA 396
Query: 395 EFLVIMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVVFG 434
E L + + V A+ S YSL V FG
Sbjct: 397 ETLDTHLLGSLDWLLPVAATLAGAFSVAYSLRFIHDVFFG 436
>gnl|CDD|180504 PRK06277, PRK06277, hydrogenase subunit F; Validated.
Length = 478
Score = 78.9 bits (195), Expect = 3e-15
Identities = 99/424 (23%), Positives = 186/424 (43%), Gaps = 42/424 (9%)
Query: 84 ISILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESM--VIGAFLSLDMLLFYIFF 141
I I ++ L L + E + FL+L + V L+ D+ Y+FF
Sbjct: 76 IIIFVLSLIASLVLI------TGLGEKKSSGLYVFLMLMGLASVSAIVLADDIFNLYVFF 129
Query: 142 EASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDL-YAM 200
E + I ++ G E AA K+ + +L I + T +I D+ A+
Sbjct: 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNAL 189
Query: 201 SKFPFSIQYWM---WIAFFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGY 257
P S + + F + +P PFHT + + +A GS L +
Sbjct: 190 LVNPTSPVIYGGLLLLIFGLLYGSGLP--PFHTIKSDIYAKAKPFGSALLQTFSK----F 243
Query: 258 GCIRFLLPLFPL--ASQYFAP---VIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMG 312
+ +L +F L YF V+ LS++A+++ +++++QTD K+L+AY +I+ G
Sbjct: 244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGG 303
Query: 313 YVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRY 372
YV G+ G G+ +F ++H + SALF G++ R T ++ GGL+ MP
Sbjct: 304 YVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSNLRKLGGLLPVMPVV 363
Query: 373 AVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQ-NSNTVAVLA------SFGVVLSALYSL 425
A +++ +A G+P +GF + ++ + Q N +A++ +F ++ A Y +
Sbjct: 364 AFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFYLI 423
Query: 426 WLYRKVVFGVSKCEKVQQLKDLSLRERCMVYPIAVLTVF---FGIYPVPIRDTFSVPLSS 482
+L + + K+ + + V+ +AVLT+ G++P + + +
Sbjct: 424 YL--------KPKPEELEYKNKKV-PKYAVFSLAVLTILCIILGLFPDLVTNYLYPFANE 474
Query: 483 IIEN 486
I N
Sbjct: 475 IGRN 478
>gnl|CDD|179434 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2;
Provisional.
Length = 513
Score = 73.9 bits (182), Expect = 9e-14
Identities = 61/214 (28%), Positives = 115/214 (53%), Gaps = 5/214 (2%)
Query: 220 AIKIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYG-CIRFLLPLFPLASQYFAPVI 278
A KI PFH W P+ + +PT FL+ + K G+ IR L+ FP + + +
Sbjct: 221 AFKISAVPFHQWTPDVYEGSPTPVVAFLS-VGSKAAGFALAIRLLVTAFPSFDEQWKLLF 279
Query: 279 FFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGL 338
L++++++ ++V++ QT +K+++AYSSI G+V IG+ +G ++G +F +L++
Sbjct: 280 TALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTEAGYASMVFYLLAYLF 339
Query: 339 VSSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLV 398
++ F CV + R T I Y GL P + + + ++ G+P +GF G+ +
Sbjct: 340 MNLGAFACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYL 399
Query: 399 IMSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432
+ +Q + VL G+V S + S++ Y +V+
Sbjct: 400 FWAGWQAGLYLLVL--VGLVTSVI-SIYYYIRVI 430
>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family.
This family represents a subfamily of NAD(P)H
dehydrogenase subunit 5, or ndhF. It is restricted to
two paralogs in each completed cyanobacterial genome, in
which several subtypes of ndhF are found. Included in
this family is NdhF3, shown to play a role in
high-affinity CO2 uptake in Synechococcus sp. PCC7002.
In all cases, neighboring genes include a paralog of
ndhD but do include other NAD(P)H dehydrogenase
subunits. Instead, genes related to C02 uptake tend to
be found nearby.
Length = 606
Score = 69.8 bits (171), Expect = 2e-12
Identities = 66/277 (23%), Positives = 121/277 (43%), Gaps = 14/277 (5%)
Query: 122 ESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVW-GGSERIYAAYKFFLYTFFGSIFMLF 180
E+ + G LS + Y+ E + +++IG W + A FL G + +L
Sbjct: 130 EAGLGGLVLSDSLFFSYVLLEILTLSTYLLIGFWFAQPLVVTGARDAFLTKRVGDLILLM 189
Query: 181 AIVVMCWEKKTSSIIDLY---AMSKFPFSIQYWMWIAFFCSFAIKIPMFPFHTWLPNAHV 237
+V + + + DL A + + + +A K FP H WL A +
Sbjct: 190 GVVALSPLAGSWNYDDLAQWAATANVNPTTATLLGLALIAGPTGKCAQFPLHLWLDEA-M 248
Query: 238 QAPTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSLIAIIYASLVSMV 295
+ P S+ +++ G + I+ +L L P+A + + + I SL+++
Sbjct: 249 EGPNPASILRNSVVVATGAWVLIKLQPVLTLSPVALT----ALIAIGSVTAIGGSLIAIA 304
Query: 296 QTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIYDRLH 355
Q DIK+ ++YS A+MG V I + G+ G + A+ +L+H + + LF +G I
Sbjct: 305 QIDIKRALSYSVSAYMGLVFIAV--GLGQG-DLALLLLLTHAIAKALLFMSIGSIIWNTV 361
Query: 356 TRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGF 392
T+D+ GGL P + +V + + +P F
Sbjct: 362 TQDLTELGGLWSRRPISGLSFVVGSAGLIAVPPLGSF 398
>gnl|CDD|183666 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 528
Score = 69.5 bits (171), Expect = 2e-12
Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 24/223 (10%)
Query: 219 FAIKIPMFPFHTWLPNAHVQAPT-AGSVFLAGIMLKMGGYGCIRFLLPLFP----LASQY 273
F IK M+P + WLP A+ A ++F IM K+G Y +R LF ++ +
Sbjct: 220 FLIKAAMWPLNFWLPPAYAAASAPVAALF--AIMTKVGIYAILRLSTLLFGPEAGASAGF 277
Query: 274 FAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQM 333
+ L + + ++ + +++L AY + G + I G + A++ +
Sbjct: 278 GQDWLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAATAAALYYL 337
Query: 334 LSHGLVSSALFFCVGVI-----------------YDRLHTRDIFAYGGLVHNMPRYAVVM 376
+ L ++ALF ++ YD + + M ++
Sbjct: 338 VHSTLAAAALFLLADLVERQRGAAADRLAVTPELYDLDEEEEEEVGVAIPATMALLGLLF 397
Query: 377 MVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTVAVLASFGVVL 419
+ +A GLP SGF+G+F ++ ++ A + +VL
Sbjct: 398 FICALALAGLPPLSGFLGKFALLQALLNPPGAGAAWWLWALVL 440
>gnl|CDD|180572 PRK06459, PRK06459, hydrogenase 4 subunit B; Validated.
Length = 585
Score = 66.4 bits (162), Expect = 2e-11
Identities = 60/291 (20%), Positives = 119/291 (40%), Gaps = 29/291 (9%)
Query: 131 SLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAIVVMCWEKK 190
S + LLF +E IP +V I + ++R A+ F + ++ +L
Sbjct: 91 SDNYLLFLAGWEIMTIPSYVAIALTKKNKR--PAFVFMAFGELSTVLILAGFAWAFIISG 148
Query: 191 TSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKIPMFPFH--TWLPNAHVQAPTAGSVFLA 248
T++ F + I F IK+ M PF WLP AH AP+ S L+
Sbjct: 149 TTN---------FSYLPSPVPLILASFGFIIKMGMMPFLVSEWLPIAHGNAPSNFSAILS 199
Query: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308
M MG YG ++ + + YF I + +I++ +L + V ++K L+A+S+I
Sbjct: 200 ATMTLMGVYGILKMTILTQTIPIGYFGLTILAIGAFSILFGALYAYVSENVKGLLAFSTI 259
Query: 309 AHMGYVTIG-----IFSGMKSGVEG-----AMFQMLSHGLVSSALFFCVGVIYDRLHTRD 358
+ G + + + + + +E + +H + + LF G+ + T
Sbjct: 260 ENNGAILVALGLYMVTKQLITSIEHFSLITVILYSFAHSVAKTGLFLSSGLQEKQSITYS 319
Query: 359 IFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVIMSVFQNSNTV 409
+ + ++ +++ GL G + +L++ S+F + +
Sbjct: 320 KKIRNRWI----ELGLTLLASSLS--GLLPNIGGVASWLLLESLFMFAYVL 364
>gnl|CDD|180955 PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 613
Score = 60.7 bits (148), Expect = 8e-10
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 226 FPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRF--LLPLFPLASQYFAPVIFFLSL 283
FP H WL A ++ P S+ +++ G + I+ +L L P+A V+ +
Sbjct: 238 FPLHLWLDEA-MEGPNPASILRNSVVVATGAWVLIKLQPVLALSPVALT----VLIVIGT 292
Query: 284 IAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSAL 343
+ I ASLV++ Q DIK+ ++YS+ A++G V I + + A+ +L+H + + L
Sbjct: 293 VTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQQ---PDIALLLLLTHAIAKALL 349
Query: 344 FFCVGVIYDRLHTRDIFAYGGLVHNMP 370
F VG I T+D+ GGL MP
Sbjct: 350 FMSVGSIILTTITQDLTELGGLWSRMP 376
>gnl|CDD|180952 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
Validated.
Length = 673
Score = 60.4 bits (147), Expect = 1e-09
Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 24/181 (13%)
Query: 226 FPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLI 284
FP H WLP+A ++ PT S + A M+ G + R ++P+ Q F V+ ++
Sbjct: 244 FPLHVWLPDA-MEGPTPISALIHAATMVAAGVFLVAR----MYPVFEQ-FPAVMTVIAWT 297
Query: 285 AIIYASL---VSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGA-MFQMLSHGLVS 340
I A L +++ Q DIKK +AYS+I+ +GY+ + M G A +F +++H
Sbjct: 298 GAITAFLGASIALTQNDIKKGLAYSTISQLGYMVM----AMGCGAYSAGLFHLMTHAYFK 353
Query: 341 SALFFCVG---------VIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSG 391
+ LF G V +D + +D+ GGL MP A+ ++ +A G+P +G
Sbjct: 354 AMLFLGSGSVIHGMEEVVGHDPVLAQDMRLMGGLRKYMPITAITFLIGCLAISGIPPFAG 413
Query: 392 F 392
F
Sbjct: 414 F 414
>gnl|CDD|183664 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 527
Score = 52.0 bits (125), Expect = 3e-07
Identities = 69/318 (21%), Positives = 123/318 (38%), Gaps = 37/318 (11%)
Query: 111 FREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLY 170
F E M+ +L+ I A S + L I FE + +II I A +
Sbjct: 63 FSE-MLCYLLYYISSIAAISSSSLTLVVIGFEFMALSALMIIAAGCPGGNIGAFIHYACV 121
Query: 171 TFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFAIKI--PMFPF 228
FF S ++ L S + QY + + I FP
Sbjct: 122 HFF------------------SGVLLLVGASGQAQNGQYTGYCKLLFMLGLLINCACFPA 163
Query: 229 HTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIY 288
+W+ +A+ A G + L+ K+ + F ++ FL +I IY
Sbjct: 164 SSWVVDAYPAASNFGIIVLSLFTTKVAALVLLLF---------FSGEEILLFLGIITAIY 214
Query: 289 ASLVSMVQTDIKKLIAYSSIAHMGYVTIGI-FSGMKSGVEGAMFQMLSHGLVSSALFFCV 347
+ + ++ +I++L+ Y+ + MG + I I FSG G + + +V L F V
Sbjct: 215 GIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGSSGVAIGILILQIVLSVVYQTLLFMV 274
Query: 348 G-VIYDRLHTRDIFAYGGLVHNMPRYAV--VMMVFTMANMGLPGTSGFIGEFLVIMSVFQ 404
+ +R ++ GGL M A+ ++ + M PGT+GF+ + L+ S+
Sbjct: 275 ADSVINRTRKFNLNRVGGL-FKMSLEAMCCIIAILNMG--AFPGTAGFVSKSLITHSIDT 331
Query: 405 NSNTVAVLASFGVVLSAL 422
T+ + ++ S L
Sbjct: 332 AGLTLVLYKKLFLICSLL 349
>gnl|CDD|180634 PRK06591, PRK06591, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 432
Score = 49.0 bits (117), Expect = 3e-06
Identities = 71/333 (21%), Positives = 137/333 (41%), Gaps = 24/333 (7%)
Query: 105 KSIQENFREYMIAFLVLESM-VIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYA 163
K I N + L+ +G + D Y+F E S + +V+I + +
Sbjct: 107 KYINNNRKSLFYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLIG 166
Query: 164 AYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYA-MSKFPFSIQYWMWIAFFCSFAI- 221
A+ + + G+ +L AI + + ++ D+ A + + S + I FF AI
Sbjct: 167 AFDYLIMGSIGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNSRIITIAIGFFLIGAIL 226
Query: 222 KIPMFPFHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFF- 280
K FP H W+ A+ + V+LAGI +G Y +F + + A F
Sbjct: 227 KTAFFPMHFWMMRAYNNTASVILVYLAGISTIIGIYIIYKFTYIIIGYETIKTAITNFIR 286
Query: 281 -LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSHGLV 339
++L +I A + + K +I YS +GYV + ++G+ +L+ +
Sbjct: 287 PIALATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVF--LLYVTENGIIILPSLLLADSIN 344
Query: 340 SSALFFCVGVIYDRLHTRDIFAYGGLVHNMPRYAVVMMVFTMANMGLPGTSGFIGEFLVI 399
ALF I AY P V++++ + + GLP + F + ++
Sbjct: 345 KIALFL-------------IDAYNESYKREPN-KVLIIIAIICSCGLPISPLFFIKVNIL 390
Query: 400 MSVFQNSNTVAVLASFGVVLSALYSLWLYRKVV 432
+ + + + ++LS++ SL+ + K+V
Sbjct: 391 ELLLTQNLLLDFII---ILLSSVGSLFYHYKMV 420
>gnl|CDD|181264 PRK08168, PRK08168, NADH dehydrogenase subunit L; Provisional.
Length = 516
Score = 45.5 bits (108), Expect = 3e-05
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Query: 163 AAYKFFLYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMWIAFFCSFA-- 220
AA+K F+ + +L A + E + S+ L+A + A A
Sbjct: 152 AAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALWAHLAAQGASPSLQAAALLLVLAVI 211
Query: 221 IKIPMFPFHTWLPNAHVQAPTAGSVFL-AGIMLKMGGYGCIRFLLPLFPLASQYFAPVIF 279
+K P H WL ++APT S L AG+ + +GG+ IRF PL A P +
Sbjct: 212 LKTAQLPVHGWLIQV-MEAPTPVSALLHAGV-VNLGGFVLIRFA-PLLEQA----PPARW 264
Query: 280 FLSLIAII---YASLVSMVQTDIKKLIAYSSIAHMGY 313
L L+ + A LV + + IK +A+S++A MG+
Sbjct: 265 LLVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGF 301
>gnl|CDD|181498 PRK08601, PRK08601, NADH dehydrogenase subunit 5; Validated.
Length = 509
Score = 40.4 bits (95), Expect = 0.001
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 27/248 (10%)
Query: 109 ENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFF 168
++R+Y F A+LS D+ L + + A+L+ + ++IG+ G + A K
Sbjct: 100 RSYRKYFALFTFTTGFASLAWLSGDLRLMALCWGATLLGLTLLIGLNKGWKVAREAAKIS 159
Query: 169 LYTFFGSIFMLFAIVVMCWEKKTSSIIDLYAMSKFPFSIQYWMW--IAFFCSFAIKIP-- 224
F S L +V + + ++ + W I A+ IP
Sbjct: 160 GMLFLISWLALALAIVWLFIATGEWQLTSVLSNENLAQLGTWEKTGINLLLILAVMIPAA 219
Query: 225 MFPFHTWLPNAHVQAPT-------AGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPV 277
+PF WL + V APT AG V GIML RF PL A +
Sbjct: 220 QWPFQRWLIESAV-APTPVSAIMHAGLVNAGGIMLT-------RFS----PLFHDDIAQI 267
Query: 278 IFF-LSLIAIIYASLVSMVQTDIKKLIAYSSIAHMGYVTIGIFSGMKSGVEGAMFQMLSH 336
+ + I+++ + +S+VQ D K+ + S++A MG++ + G S A+ ++ H
Sbjct: 268 LLLIFASISVLIGTGISLVQVDYKRQLVGSTMAQMGFMLVQCALGAYS---AAIIHLILH 324
Query: 337 GLVSSALF 344
GL + LF
Sbjct: 325 GLFKATLF 332
>gnl|CDD|184380 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 29.4 bits (66), Expect = 2.0
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 32 SFFGVALGISTINFIFSLFVWSV----FDKGRSSFQMIEYYHWIDYF-----CSYHLGVD 82
F + F+LF W F+ S + +W F +
Sbjct: 19 HFVVLEFCFYISGAFFALFTWGPGALDFNAINPSIADFPWAYWPTIFNYIINVWGQPKIY 78
Query: 83 GISILLVVLTTFLTPFCILS 102
++ L +L + L P I+
Sbjct: 79 DYNLKLKLLASLLGPAIIVI 98
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 29.3 bits (66), Expect = 2.1
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 16/60 (26%)
Query: 85 SILLVVLTTFLTPFCILSSWKSIQENFREYMIAFLVLESMVIGAFLSLDMLLFYIFFEAS 144
+L++ FL +LSSWK IA L A L + +L I E+S
Sbjct: 314 CLLILGAIKFLQWLSLLSSWKG---------IASLA-------AGLVIVTILMQILIESS 357
>gnl|CDD|151502 pfam11056, UvsY, Recombination, repair and ssDNA binding protein
UvsY. UvsY protein enhances the rate of
single-stranded-DNA-dependant ATP hydrolysis by UvsX
protein. The enhancement of ATP hydrolysis by UvsY
protein is shown to result from the ability of UvsY
protein to increase the affinity of UvsX protein for
single-stranded DNA.
Length = 128
Score = 29.2 bits (66), Expect = 2.8
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 185 MCWEKKTSSIIDLY-----AMSKFPFSIQYWMWIAFFCSFAIKI 223
+C E S I + K IQY + F A+
Sbjct: 64 VCMEIYEKSEIKTVIAADEEVIKIDAKIQYIDQVLDFLEEALDA 107
>gnl|CDD|168619 PRK06588, PRK06588, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 506
Score = 28.2 bits (63), Expect = 4.5
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 228 FHTWLPNAHVQAPTAGSVFLAGIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAII 287
+ W+ N + A ++G V+L K+ L+ + L S ++ F + II
Sbjct: 158 VNGWVVNCYPIASSSGIVYLISFTTKVT-------LIIILKLFSGL--EILKFFGISMII 208
Query: 288 YASLVSMVQTDIKKLIAYSSIAHMGYVTIGI 318
Y + S+++ ++K+LI Y +++ +G++ I
Sbjct: 209 YGLVFSLIEKNLKRLICYLTVSQLGFILAAI 239
>gnl|CDD|182960 PRK11098, PRK11098, microcin B17 transporter; Reviewed.
Length = 409
Score = 28.0 bits (63), Expect = 6.1
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 129 FLSLDMLLFYIFFEASLIPMFVIIGVWGGSERIYAAYKFFLYTFFGSIFMLFAI 182
F S D L FY ++ V +G++ G IY+ + + ++ GS ++F
Sbjct: 55 FWSPDFLWFYAYY-------LVCVGLFAGFWFIYSPHPWQRWSILGSALIIFVT 101
>gnl|CDD|178054 PLN02435, PLN02435, probable UDP-N-acetylglucosamine
pyrophosphorylase.
Length = 493
Score = 27.1 bits (60), Expect = 9.7
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 353 RLHTRDIFAYGG-LVHNMPRYA 373
RLHTR + A GG L H++P YA
Sbjct: 439 RLHTRWVVAAGGFLTHSVPLYA 460
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.333 0.145 0.458
Gapped
Lambda K H
0.267 0.0744 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 8,353,201
Number of extensions: 565857
Number of successful extensions: 2430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2200
Number of HSP's successfully gapped: 190
Length of query: 499
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 402
Effective length of database: 3,898,497
Effective search space: 1567195794
Effective search space used: 1567195794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 59 (26.5 bits)