HHsearch alignment for GI: 254780867 and conserved domain: CHL00011

>CHL00011 ndhD NADH dehydrogenase subunit 4.
Probab=100.00  E-value=0  Score=566.54  Aligned_cols=399  Identities=18%  Similarity=0.276  Sum_probs=329.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76410079999999999999999999999632100224206679999999999873146102212457778877776653
Q gi|254780867|r   69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM  148 (478)
Q Consensus        69 ~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~  148 (478)
T Consensus        79 ~lgiDgLs~~lvlLt~~i~~l~---~l~s~~~~~-~~~~f~~l~L~~~~~~~G~~~s~dl~~~yvf~E~~~i~sy~LI~~  154 (500)
T CHL00011         79 RLGIDGLSIGLILLTGFITTLA---TLAAWPVTR-NSRLFHFLMLAMYSGQIGLFSSQDLLLFFLMWELELIPVYLLLSM  154 (500)
T ss_pred             EEEHHHHHHHHHHHHHHHHHHH---HHHCCCCCC-CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8731687899999999999999---984043246-754999999999999999999753999999999999878751110


Q ss_pred             HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2000134455555401462046799889885300---1000001222211101343100001222211234444432110
Q gi|254780867|r  149 NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYG---FTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPF  225 (478)
Q Consensus       149 ~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~---~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPf  225 (478)
T Consensus       155 ~g~~~-~~~aa~k~~l~t~~gs~~lL~gi~~l~~~~~~~~t~~~~~l~~~~~~---~~~~~~~~~~~ligf~vK~~~fP~  230 (500)
T CHL00011        155 WGGKK-RLYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQSYP---VALEILFYIGFLIAFAVKLPIIPL  230 (500)
T ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             48889-99999999999988899999999999999854488899999844563---259999999999999985284546


Q ss_pred             CHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             0012101221001233332100000232111112440001-122210000012221022220000012445443564211
Q gi|254780867|r  226 HMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI  304 (478)
Q Consensus       226 H~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi  304 (478)
T Consensus       231 H~WlPda~~~ap~~~s~llsg~~~k~g~y~l~R~~~~~~~~~~~~~~~~l~~lg~it~i~g~~~Al~Q~d~KrllAYSsi  310 (500)
T CHL00011        231 HTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSLFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSV  310 (500)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             01167777789839999999999998887779850001423789999999999999999999999997017888898417


Q ss_pred             CCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             1244211111121-577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r  305 GHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI  383 (478)
Q Consensus       305 ~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl  383 (478)
T Consensus       311 s~~G~i~lg~~~~~~~g~~ga~~~~~~H~~~k~~LFl~~g~i~~~~g--t~~i~~lgGl~~~~P~~a~~~~i~~la~~G~  388 (500)
T CHL00011        311 SHMGFIIIGIGSITDTGLNGAILQMISHGFIGAALFFLAGTSYDRIR--LLYLDEMGGIAIPMPKIFTMFSSFSMASLAL  388 (500)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHCCCCHHHHCHHHHHHHHHHHHHHCCC
T ss_conf             44889999998706889999899999999999999999999998158--7751403780766649999999999998168


Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-----CCCCCCHHHHHHH
Q ss_conf             50000675999999999628499------999999999999999999999996499877865-----5673321899999
Q gi|254780867|r  384 PPFAGFFGKYFLLISAVKREFYV------LAIVALLSSVISAYYYLRVISIMWFDQSTECVV-----VVAKEMRLFIFGS  452 (478)
Q Consensus       384 Pp~~GF~sK~~i~~~~~~~~~~~------~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~-----~~~~~~~~~~~~~  452 (478)
T Consensus       389 P~~~GF~~k~~i~~g~~~~~~~~~~~~~~~~~i~~~g~il~a~Y~l~~~~~~f~g~~~~~~~~~~~~d~~~~e~~~~~~l  468 (500)
T CHL00011        389 PGMSGFVAELIVFFGIITSQKYLLMFKILITFVMAIGMILTPIYLLSMLRQMFYGYKLFNVPNSYFFDSGPRELFISICL  468 (500)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             75253889999999999716432578999999999999999999999999997799887665335668988899999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999999999767658999998751
Q gi|254780867|r  453 ILFVTGYFLIENILNSSIMKIVMSL  477 (478)
Q Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~l  477 (478)
T Consensus       469 ~~~~i~~Gl~P~~~l~~~~~~v~~l  493 (500)
T CHL00011        469 LLPVIGIGIYPDFVLSLSVDKVEAI  493 (500)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9999999837599999899999999