HHsearch alignment for GI: 254780867 and conserved domain: COG1007
>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion].
Probab=100.00 E-value=0 Score=593.28 Aligned_cols=470 Identities=41% Similarity=0.677 Sum_probs=427.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 86299999999999999999998640230158999999999999999999971322100316764100799999999999
Q gi|254780867|r 7 INDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMS 86 (478)
Q Consensus 7 ~~~l~lllP~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~ 86 (478)
T Consensus 2 ~~~~~~~lPeiil~~~~~~~l~~~~~~~~-~~~~~~~la~~~l~~a~~~l~~~~~~~~~~~~~~~~d~~a~~~~~~~l~~ 80 (475)
T COG1007 2 SSNLSLLLPEIILAITALVLLLVGLFIRR-SRSLLAYLAVLGLLAALASLLFIAYRGSAFAGAFIVDALALLMKIVVLLA 80 (475)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20267771799999999999999998511-28799999999999999999972676403367887746899999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf 99999999999632100224206679999999999873146102212457778877776653200013445555540146
Q gi|254780867|r 87 SIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLG 166 (478)
Q Consensus 87 ~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~ 166 (478)
T Consensus 81 s~~~l~~s~~~~~~~~~~~~Efy~L~l~a~lG~~~~~sa~~l~~lfiglEl~Sl~~Y~L~a~~r~~~~s~EaalKYfvlG 160 (475)
T COG1007 81 SLAALILSLPYLERAGTFKGEFYALLLFATLGMIVMASANNLLLLFIGLELLSLALYVLAALRRDSKRSSEAALKYFVLG 160 (475)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 99999985799996687525899999999999999998410999999999999999999984177641257778999889
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf 20467998898853001000001222211101343100001222211234444432110001210122100123333210
Q gi|254780867|r 167 AFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLAT 246 (478)
Q Consensus 167 ~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~ 246 (478)
T Consensus 161 alsS~~~l~G~al~Y~~tGsl~l~~i~~~~~~~~~~~~l~~g~vfii~gl~FKlsavPFH~W~PDVYeGApt~v~afls~ 240 (475)
T COG1007 161 ALSSAFLLYGIALVYGATGSLSLSGIAAYLNGGGEPLGLLLGLVFIIAGLGFKLSAVPFHMWTPDVYEGAPTPVTAFLST 240 (475)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999999999961788761788865126764249999999999999999734762015740116999307899875
Q ss_pred CEECCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf 00002321111124400011-2221000001222102222000001244544356421112442111111215-778888
Q gi|254780867|r 247 IPKFATTMALCRITSVFWPM-LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAM 324 (478)
Q Consensus 247 ~~~~~~~~~l~r~~~~~~~~-~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~-~~~~~~ 324 (478)
T Consensus 241 a~Kia~f~vl~Ri~~~~~~~~~~~~~~i~~iiAv~SM~~GN~~Al~Q~nvKRlLAYSSIah~Gy~L~gl~a~~~~g~~a~ 320 (475)
T COG1007 241 APKIAAFAVLLRIFVTAFGPDAPDWYLIFAIIAVASMLVGNFAALSQTNVKRLLAYSSIAHMGYLLVGLAAVTVGGYAAV 320 (475)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 27899999999999970676421599999999999999999999985159999998489889999999997030222369
Q ss_pred HHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf 64300232010011000026787408764550210466523211478999986530366500006759999999996284
Q gi|254780867|r 325 VRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREF 404 (478)
Q Consensus 325 ~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~ 404 (478)
T Consensus 321 ~~y~l~Y~~~~lgaf~~v~~~~~~~~~-~~~~~~~~GL~~~~P~~A~~~~i~m~SLaGIPP~~GF~gK~~vf~~av~~~~ 399 (475)
T COG1007 321 LFYLLAYAFMSLGAFGVVALLSSKEGG-AESISDLAGLSKRHPLLAALLTILMLSLAGIPPLAGFWGKFYVFLAAVQAGL 399 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf 999999999998999999998667887-5324644050336868999999999997589840129999999999997386
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999999999999996499877865567--332189999999999999997676589999987519
Q gi|254780867|r 405 YVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVA--KEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478 (478)
Q Consensus 405 ~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 478 (478)
T Consensus 400 ~~Laii~vl~S~isa~YYlRvv~~m~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lgi~~~~~~~~~~~a~~~~~ 475 (475)
T COG1007 400 WWLAVIAVLNSAISAYYYLRVVKAMYFEEPEGAFRDAPQYTALKAVLLVAAILVLVLGILPQPVIDLAAQAAAVLF 475 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999799899999999999707864445554455503799999999999999703989999999877429