HHsearch alignment for GI: 254780867 and conserved domain: COG1007

>COG1007 NuoN NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion].
Probab=100.00  E-value=0  Score=593.28  Aligned_cols=470  Identities=41%  Similarity=0.677  Sum_probs=427.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             86299999999999999999998640230158999999999999999999971322100316764100799999999999
Q gi|254780867|r    7 INDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMS   86 (478)
Q Consensus         7 ~~~l~lllP~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~   86 (478)
T Consensus         2 ~~~~~~~lPeiil~~~~~~~l~~~~~~~~-~~~~~~~la~~~l~~a~~~l~~~~~~~~~~~~~~~~d~~a~~~~~~~l~~   80 (475)
T COG1007           2 SSNLSLLLPEIILAITALVLLLVGLFIRR-SRSLLAYLAVLGLLAALASLLFIAYRGSAFAGAFIVDALALLMKIVVLLA   80 (475)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             20267771799999999999999998511-28799999999999999999972676403367887746899999999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
Q ss_conf             99999999999632100224206679999999999873146102212457778877776653200013445555540146
Q gi|254780867|r   87 SIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLG  166 (478)
Q Consensus        87 ~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~  166 (478)
T Consensus        81 s~~~l~~s~~~~~~~~~~~~Efy~L~l~a~lG~~~~~sa~~l~~lfiglEl~Sl~~Y~L~a~~r~~~~s~EaalKYfvlG  160 (475)
T COG1007          81 SLAALILSLPYLERAGTFKGEFYALLLFATLGMIVMASANNLLLLFIGLELLSLALYVLAALRRDSKRSSEAALKYFVLG  160 (475)
T ss_pred             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf             99999985799996687525899999999999999998410999999999999999999984177641257778999889


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
Q ss_conf             20467998898853001000001222211101343100001222211234444432110001210122100123333210
Q gi|254780867|r  167 AFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLAT  246 (478)
Q Consensus       167 ~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~  246 (478)
T Consensus       161 alsS~~~l~G~al~Y~~tGsl~l~~i~~~~~~~~~~~~l~~g~vfii~gl~FKlsavPFH~W~PDVYeGApt~v~afls~  240 (475)
T COG1007         161 ALSSAFLLYGIALVYGATGSLSLSGIAAYLNGGGEPLGLLLGLVFIIAGLGFKLSAVPFHMWTPDVYEGAPTPVTAFLST  240 (475)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             89999999999999961788761788865126764249999999999999999734762015740116999307899875


Q ss_pred             CEECCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHH
Q ss_conf             00002321111124400011-2221000001222102222000001244544356421112442111111215-778888
Q gi|254780867|r  247 IPKFATTMALCRITSVFWPM-LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAM  324 (478)
Q Consensus       247 ~~~~~~~~~l~r~~~~~~~~-~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~-~~~~~~  324 (478)
T Consensus       241 a~Kia~f~vl~Ri~~~~~~~~~~~~~~i~~iiAv~SM~~GN~~Al~Q~nvKRlLAYSSIah~Gy~L~gl~a~~~~g~~a~  320 (475)
T COG1007         241 APKIAAFAVLLRIFVTAFGPDAPDWYLIFAIIAVASMLVGNFAALSQTNVKRLLAYSSIAHMGYLLVGLAAVTVGGYAAV  320 (475)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf             27899999999999970676421599999999999999999999985159999998489889999999997030222369


Q ss_pred             HHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf             64300232010011000026787408764550210466523211478999986530366500006759999999996284
Q gi|254780867|r  325 VRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREF  404 (478)
Q Consensus       325 ~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~  404 (478)
T Consensus       321 ~~y~l~Y~~~~lgaf~~v~~~~~~~~~-~~~~~~~~GL~~~~P~~A~~~~i~m~SLaGIPP~~GF~gK~~vf~~av~~~~  399 (475)
T COG1007         321 LFYLLAYAFMSLGAFGVVALLSSKEGG-AESISDLAGLSKRHPLLAALLTILMLSLAGIPPLAGFWGKFYVFLAAVQAGL  399 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCH
T ss_conf             999999999998999999998667887-5324644050336868999999999997589840129999999999997386


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999999999999999996499877865567--332189999999999999997676589999987519
Q gi|254780867|r  405 YVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVA--KEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF  478 (478)
Q Consensus       405 ~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  478 (478)
T Consensus       400 ~~Laii~vl~S~isa~YYlRvv~~m~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lgi~~~~~~~~~~~a~~~~~  475 (475)
T COG1007         400 WWLAVIAVLNSAISAYYYLRVVKAMYFEEPEGAFRDAPQYTALKAVLLVAAILVLVLGILPQPVIDLAAQAAAVLF  475 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999799899999999999707864445554455503799999999999999703989999999877429