HHsearch alignment for GI: 254780867 and conserved domain: COG4078
>COG4078 Predicted membrane protein [Function unknown].
Probab=96.63 E-value=0.00042 Score=39.56 Aligned_cols=117 Identities=19% Similarity=0.327 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999987314610221245777887777665320001344555554014620467998898853001000001222
Q gi|254780867|r 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQI 192 (478)
Q Consensus 113 l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l 192 (478)
T Consensus 76 iVcglAtaGam~TgDlFnftLFlsL~GI~NiGivs-aV~~e~vL~aafqYGLiamiAsLPLFGgAaliLastGTLSv~EL 154 (221)
T COG4078 76 IVCGLATAGAMTTGDLFNFTLFLSLLGISNIGIVS-AVEDEFVLEAAFQYGLIAMIASLPLFGGAALILASTGTLSVHEL 154 (221)
T ss_pred HHHHHHHCCCEEECCHHHHHHHHHHHCCCCCCEEE-HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEHHHH
T ss_conf 99766404644433057799999997622011000-25689999989877489999606556751367743772368886
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 211101343100001222211234444432110001210122
Q gi|254780867|r 193 ATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYE 234 (478)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~ 234 (478)
T Consensus 155 ~km~----~~~~l~f~k~ll~aGv~GEtGvaPFYA~KaemFR 192 (221)
T COG4078 155 MKMP----KGATLTFGKALLTAGVIGETGVAPFYAVKAEMFR 192 (221)
T ss_pred HCCC----CCCEEHHHHHHHHCCCCCCCCCCHHHHHHHHHHC
T ss_conf 2699----9977449899987121244665605777799843