HHsearch alignment for GI: 254780867 and conserved domain: MTH00004
>MTH00004 ND5 NADH dehydrogenase subunit 5; Validated.
Probab=100.00 E-value=0 Score=529.77 Aligned_cols=381 Identities=19% Similarity=0.248 Sum_probs=319.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 75 ~i~~~f~~D~lS~~f~~vv~~Is~~I~~yS~~YM~~d~~-~~rF~~~l~lF~~sMl~lV~s~Nl~~lfigWEgvGl~Syl 153 (604)
T MTH00004 75 NIPISFKLDQYSLMFLPIALFVTWSILEFATWYMASDPH-ITKFFKYLLIFLIAMLILTTANNMFQLFIGWEGVGIMSFL 153 (604)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 606776328639999999999999999996897078999-1689999999999999999973099999999999999998
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 154 LI~~~~~r~~a~~aa~ka~i~nRiGD~~lll~i~~l~~~~gt~~~~~~~~~~---~~~~l--~~l-~lilaa~gKSAQfP 227 (604)
T MTH00004 154 LIGWWHGRAEANTAALQAIIYNRIGDIGLILSMAWLAMTLNTWEIQQLFSQT---QTPLL--PLL-GLILAATGKSAQFG 227 (604)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHCC---CHHHH--HHH-HHHHHHHHHCCCCC
T ss_conf 8845069768899999999998312699999999999994884399988364---05899--999-99999998404277
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00012101221001233332100-00023211111244000112221000001222102222000001244544356421
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSS 303 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySs 303 (478)
T Consensus 228 fh~WLP~AMe-aPTPVSALlHssTmV~AGVylliR~~~l~~~-~~~~~~~~l~~G~lT~l~aa~~Al~Q~DiKkiiAyST 305 (604)
T MTH00004 228 LHPWLPAAME-GPTPVSALLHSSTMVVAGIFLLIRTHPILQN-NQTALTICLCLGALTTLFAATCALTQNDIKKIIAFST 305 (604)
T ss_pred CCCCCHHHHC-CCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 7201467755-8993676624430124679999999999865-7999999999999999999999972231878999889
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 11244211111121577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 304 IGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 304 i~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 306 ~SQLG~M~~~iglg~~--~lA~fHl~~HA~FKAlLFL~aGsiIH~~-~~~qDir~mGgl~~~mP~t~~~~~igslsL~G~ 382 (604)
T MTH00004 306 SSQLGLMMVTIGLNQP--QLAFLHISTHAFFKAMLFLCSGSIIHNL-NNEQDIRKMGGLQKTLPITTSCLTIGNLALMGT 382 (604)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9899999999974639--9999999988999999998105999705-786209986798620389999999999985267
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 5000067599999999962849999-999999999999999999999649987786556733-2189999999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVLA-IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE-MRLFIFGSILFVT 457 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~~-~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 457 (478)
T Consensus 383 PflsGFySKD~IlE~~~~s~~n~~~~~~~~~~~~lT~~Ys~Rl~~~~~~~~~~~~~~~~~~E~~~~m~~Pl~~La~ 458 (604)
T MTH00004 383 PFLAGFYSKDLIIETLNTSYLNAWALLLTLLATSFTATYSLRMTLLVQTGFPRTPPLTPINENNPTITNPITRLAL 458 (604)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 7432241169999999857508999999999999999999999999980899888878878896899999999999