HHsearch alignment for GI: 254780867 and conserved domain: MTH00014

>MTH00014 ND4 NADH dehydrogenase subunit 4; Validated.
Probab=100.00  E-value=0  Score=541.11  Aligned_cols=412  Identities=19%  Similarity=0.217  Sum_probs=356.4

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             99999713221003167641007999999999999999999999963210022420667999999999987314610221
Q gi|254780867|r   53 LFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFY  132 (478)
Q Consensus        53 l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~  132 (478)
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vD~lS~~l~~Ls~~i~~l~~l~S~~~~~~~~~~-~~f~~l~l~l~~~m~~~f~s~nl~~fy  114 (451)
T MTH00014         36 LIFLYMPSASISMLTESLSSDMLSFPLIILTLWITALMILASFKIFQNNKAP-KTFMTNILILNLILILCFSASNLLMFY  114 (451)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9998565432778758883467479999999999999999969998568637-899999999999999999982799999


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             24577788777766532000134455555401462046799889885300100000122221110134310000122221
Q gi|254780867|r  133 MSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLI  212 (478)
Q Consensus       133 v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll  212 (478)
T Consensus       115 if~E~~lip~~~LI~~~g~~~~r~~A~~~~~iyt~~gsl~lL~~i~~ly~~~gs~~~~~~~~~~~~--~~~~~~~~~~~~  192 (451)
T MTH00014        115 IFFEASLIPTLFLILGWGYQPERLQAGFYLMIYTVTASLPLLMSILLIFYTNNSLNMFMSNTYTPP--SIYSMNLWWLIT  192 (451)
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC--CHHHHHHHHHHH
T ss_conf             999999999999999608979999999999999999999999999999986496999999986634--458999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf             12344444321100012101221001233332100000232111112440001122210000012221022220000012
Q gi|254780867|r  213 LVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ  292 (478)
Q Consensus       213 ~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q  292 (478)
T Consensus       193 ~~aF~vK~p~~P~H~WLP~Ah~eAP~~~S~lLagvllK~G~YgliR~~~~~~~~~~~~~~~l~~i~~~~~~~~~l~al~Q  272 (451)
T MTH00014        193 ILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMSINKSLSAPLSSISLVGAVITSLICIRQ  272 (451)
T ss_pred             HHHHHHHHHHHHHHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999970687201013431075977999999999999999999999985313369999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHH
Q ss_conf             44544356421112442111111215-77888864300232010011000026787408764550210466523211478
Q gi|254780867|r  293 KDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTC  371 (478)
Q Consensus       293 ~d~KrllAySsi~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~  371 (478)
T Consensus       273 ~DlKrllAYSSIshmG~i~~gi~~~~~~g~~gal~~mi~Hgl~~s~LF~~~g~i~~~~~--tr~i~~~~Gl~~~~P~~~~  350 (451)
T MTH00014        273 PDLKSLIAYSSVGHMGLMTAGAMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTH--TRSLFLTKGLLSLFPAMTM  350 (451)
T ss_pred             HCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHH
T ss_conf             36683542117989999999999745899999999999999999999999999998757--7149985893400279999


Q ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHH
Q ss_conf             99998653036650000675999999999628499999999999999999999999996499877865---567332189
Q gi|254780867|r  372 ALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV---VVAKEMRLF  448 (478)
Q Consensus       372 ~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~---~~~~~~~~~  448 (478)
T Consensus       351 ~~~i~~la~~g~Pp~~gF~sE~~i~~~~~~~~-~~~~~~~~~~~~lsa~Y~l~l~~~~~~G~~~~~~~~~~~~~~re~~~  429 (451)
T MTH00014        351 WWFLLSAANMAAPPSINLLSEIMLLTSILSSS-TSTAILLALTSFLAAAYSLFLYTSTQHGSPPSFSNPLNLFTPRNHTL  429 (451)
T ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHH
T ss_conf             99999999762653361999999999999986-99999999999999999999999987799801040089984579999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999999976765899
Q gi|254780867|r  449 IFGSILFVTGYFLIENILNSSI  470 (478)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~~~~  470 (478)
T Consensus       430 ~~~h~~pl~~l~~~p~~~~~w~  451 (451)
T MTH00014        430 MTLHLVPLFILILKPDLITNWL  451 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC
T ss_conf             9999999999998199997149