HHsearch alignment for GI: 254780867 and conserved domain: MTH00032
>MTH00032 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=556.62 Aligned_cols=419 Identities=18% Similarity=0.234 Sum_probs=337.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHH--HHHHHHHCCCC-------------HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999864023015899999999999-999--99999713221-------------0031676410079999
Q gi|254780867|r 16 EIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLL-SIA--LFFLLIMPYEG-------------IGLGGAYISDRFSYFI 79 (478)
Q Consensus 16 ~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l-~i~--l~~~~~~~~~~-------------~~~~~~~~~D~~s~~~ 79 (478)
T Consensus 6 i~lPl~~~~i~~~~gr~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~D~ls~~m 85 (677)
T MTH00032 6 LLLPFINAFLLGFFGRLIGTIGSGILSTICMGSSTLIALFLAYEVLINDAVVHIELYKWIESEIFITHIGLLYDTLSVTM 85 (677)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEHHHHHHH
T ss_conf 99999999999985052560357999999999999999999999955897389998543345676525787752117999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 99999999999999999963210022420667999999999987314610221245777887777665320001344555
Q gi|254780867|r 80 KAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAA 159 (478)
Q Consensus 80 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa 159 (478)
T Consensus 86 ~~~v~~is~lv~iYS~~Ym~~d~~~-~rf~~~l~lF~~~Ml~lV~s~nl~~lfigWE~vgl~SylLI~~~~~r~~a~~aa 164 (677)
T MTH00032 86 LLVISSISTLVHIYSTSYMSDDPHV-PRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRIQANKAA 164 (677)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9999999999999968873799985-179999999999999999956199999999999999897606268847899999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHC--------------CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 554014620467998898853001000001222211101--------------343100001222211234444432110
Q gi|254780867|r 160 LKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFI--------------GHRSFVLIVGVVLILVGLFFKMALVPF 225 (478)
Q Consensus 160 ~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~--------------~~~~~~~~~~~~ll~~g~~~K~~~fPf 225 (478)
T Consensus 165 ~ka~i~nrvGd~~~l~gi~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ga~~KSAq~pl 244 (677)
T MTH00032 165 IKAIVVNRVGDVGVILGMVLIYKTIGSLDFLTFNGGSVGSGIMDRGYGEGGAYESPLAPFAIIGILLLIGCIGKSAQLGL 244 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999850769999999999999967742998765542256654335543320142268999999999999887410616
Q ss_pred CHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012101221001233332100-000232111112440001122210000012221022220000012445443564211
Q gi|254780867|r 226 HMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 (478)
Q Consensus 226 H~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi 304 (478)
T Consensus 245 h~WLPdAMe-gPTPVSALiHaatmV~AGvyll~R~~pl~~~-~~~~~~~i~~~G~~T~~~~a~~al~Q~DiKrilAyST~ 322 (677)
T MTH00032 245 HTWLPDAME-GPTPVSALIHAATMVTAGVFLMIRSFPLFEK-APLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTC 322 (677)
T ss_pred CHHCHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 220678755-8996047887999999899999997403443-19999999999999999999999877315588887368
Q ss_pred CCCCCCCCCCCC-HHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 124421111112-1577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 305 GHAGYALIGFST-GMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 305 ~q~G~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 323 SQlGym~~~~Gl~g~--~~~a~fHl~~Ha~fKalLFl~aG~vih~~~~~~qd~r~mGgl~~~mP~t~~~~~i~~lal~G~ 400 (677)
T MTH00032 323 SQLGYMVLIIGIEGS--HNVGLFHLVNHAFFKALLFLSAGSVIHSTTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSIMGL 400 (677)
T ss_pred HHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 889999999722207--999999999899999999970228887047435689985897345649999999999998068
Q ss_pred CHHHHHHHHHHHHHHHHHCC-------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 50000675999999999628-------------------------------------49999999999999999999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKRE-------------------------------------FYVLAIVALLSSVISAYYYLRVI 426 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~-------------------------------------~~~~~~~~~~~s~~s~~y~~~~~ 426 (478)
T Consensus 401 P~~~GF~SKd~ile~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aa~LTa~YS~RLi 480 (677)
T MTH00032 401 PYLTGFYSKDLILELTYSGRNMGIPFGSSLLSIEGDIEIKKGGIRPWGGAGLSPSRGSAFAFWLGTVAALLTAFYSIRLV 480 (677)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62011420799999998601345431110011110000012221100000013340249999999999999999999999
Q ss_pred HHHHCCCCCCCCC
Q ss_conf 9996499877865
Q gi|254780867|r 427 SIMWFDQSTECVV 439 (478)
Q Consensus 427 ~~~f~~~~~~~~~ 439 (478)
T Consensus 481 fltF~g~pn~~~~ 493 (677)
T MTH00032 481 YITFIISPNSPKE 493 (677)
T ss_pred HHHHHCCCCCCCC
T ss_conf 9998168999976