HHsearch alignment for GI: 254780867 and conserved domain: MTH00041
>MTH00041 ND2 NADH dehydrogenase subunit 2; Validated.
Probab=100.00 E-value=0 Score=431.51 Aligned_cols=303 Identities=26% Similarity=0.456 Sum_probs=268.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 42066799999999998731461022124577788777766532000134455555401462046799889885300100
Q gi|254780867|r 106 FEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTG 185 (478)
Q Consensus 106 ~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~g 185 (478)
T Consensus 2 ~~~~~ll~~~~~G~~~~~sS~~~~~~wvglEi~sls~~~Li~~~-~~~~s~EAa~KYFl~qa~aS~llL~g~~l~~~~~g 80 (350)
T MTH00041 2 NVLLFLITNVILGTIIVVSSHHWFLIWVGLELNTLSIIPILCSN-FTPRNVEATIKYFLVQAFSAAILLNGALIQAWLSG 80 (350)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29999999999999999999999999999999999999999818-99428999999999999999999999999999986
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC
Q ss_conf 00012222111013431000012222112344444321100012101221001233332100000232111112440001
Q gi|254780867|r 186 CTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP 265 (478)
Q Consensus 186 s~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~ 265 (478)
T Consensus 81 s~~i~~~~~~-----------~~~~li~~al~~Klgl~PfH~W~Pdv~~g~~~~~~~~lst~~Kiap~~ll~~~~~~~-- 147 (350)
T MTH00041 81 SWSINGPLNS-----------LSSIIITIALGLKLGLFPCHFWFPDVIQGLNFLQGLILSTWQKIAPLIILIYIINNL-- 147 (350)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 2376547779-----------999999999998538415988887685667289999999999999999999996000--
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHH
Q ss_conf 12221000001222102222000001244544356421112442111111215778888643002320100110000267
Q gi|254780867|r 266 MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSL 345 (478)
Q Consensus 266 ~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~ 345 (478)
T Consensus 148 ----~~~il~~l~~lS~liG~~~al~Q~~lkrlLAYSSIsh~G~ml~~~~~~~---~~~~~~~~~Y~~~~~~lf~~~~~- 219 (350)
T MTH00041 148 ----NSNILITLGILSVLIGGWGGLNQTQTRKILAFSSIAHMGWIIITSAYSL---NAGIIMFLIYIIINTSIFLIFNE- 219 (350)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf ----1889999999879999999998877879999989989999999999869---99999999999999999999988-
Q ss_pred HHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87408764550210466523211478999986530366500006759999999996284999999999999999999999
Q gi|254780867|r 346 RRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425 (478)
Q Consensus 346 ~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~ 425 (478)
T Consensus 220 -----~~~~~i~~l~gl~~~~p~~~~~~~i~lLSLaGlPPl~GF~~K~lil~~li~~~~~~la~i~il~Slisl~yYLRl 294 (350)
T MTH00041 220 -----FNISTLSHLNRLSYLNPISAATLILVILSLGGLPPLTGFLNKFISLNCLIQNNSILLSIILIIGSLLSLFFYLRI 294 (350)
T ss_pred -----HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----310609999849998699999999999998705157669999999999998083999999999999999999999
Q ss_pred HHHHHCCCCC
Q ss_conf 9999649987
Q gi|254780867|r 426 ISIMWFDQST 435 (478)
Q Consensus 426 ~~~~f~~~~~ 435 (478)
T Consensus 295 ~y~~~l~~~p 304 (350)
T MTH00041 295 SFNSSLILFP 304 (350)
T ss_pred HHHHHHHCCC
T ss_conf 9999986899