HHsearch alignment for GI: 254780867 and conserved domain: MTH00062
>MTH00062 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=364.16 Aligned_cols=350 Identities=17% Similarity=0.210 Sum_probs=277.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 38 ~~~~~f~~D~lS~~lilLt~~i~~~~~~~~~~~~----~~~~~~~l~--l~l~~lil~F~~~nll~FYifFE~sLIP~~~ 111 (419)
T MTH00062 38 VFNGLFIFDSLSFYLILLVLFLGLYSQVMLVNLL----SGVSRFFLF--LSLIFAILCFCVNNSLLFWFFYELSIIPLLY 111 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7606994568788999999999999999999988----889999999--9999999999997999999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 112 lI~~wG~q~eR~~A~~y~l~YTl~~SlplL~~il~l~~~~gs~~~~~~~~~~---~~~~---~~~~~~~laFlVK~Pmfp 185 (419)
T MTH00062 112 LLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSEWGSGD---SVSL---IIYYVLSFIFFTKVPLFP 185 (419)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC---HHHH---HHHHHHHHHHHHHHHHCC
T ss_conf 9988089489999999999999999999999999999865873099774320---4799---999999999999830500
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00012101221001233332100000232111112440001122210000012221022220000012445443564211
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi 304 (478)
T Consensus 186 ~H~WLPkAHvEAP~~gSmiLAGvLLKLG~YGl~R~~~~l~~~~~~---~~~~~~~~~~~~~~l~al~Q~D~K~lIAYSSV 262 (419)
T MTH00062 186 FHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGYFL---GYLFLCCLLSVFFLITACSELDGKRWLAFLSL 262 (419)
T ss_pred CCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 221574021218808899999999999999999999875746799---99999999999999999986309999999508
Q ss_pred CCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 1244211111121-577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 305 GHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 305 ~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 263 sHMg~v~~Gl~~~~~~g~~ga~~~ml~HGl~ss~LF~l~~~~Yer~~--SRsl~~~kG~~~~~p~l~~~~fl~~~~nm~~ 340 (419)
T MTH00062 263 SHIVVPVLGLFVGDWSSIYLSFFYCLGHGLSAGLVFLLLWCFYEVSG--SRNWVLLKSGVGGSLSMQVIIVFGFLSLCSF 340 (419)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88999999999805799999999999889989999999868872547--4999998150865289999999999997179
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 50000675999999999628499999999999999999999999996499
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQ 433 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~ 433 (478)
T Consensus 341 PPslnf~gEi~l~~s~~~~--~~~~~~~~~~~ff~~~~~l~l~~~~l~~~ 388 (419)
T MTH00062 341 PPTIQFFCEVFLVSSSSGV--LVYLLFWCIYLFFGGLVPLILLGHLLIRS 388 (419)
T ss_pred CCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_conf 9951499999999999999--99999999999999999999989787511