HHsearch alignment for GI: 254780867 and conserved domain: MTH00066
>MTH00066 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=525.73 Aligned_cols=382 Identities=19% Similarity=0.250 Sum_probs=321.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 00316764100799999999999999999999996321002242066799999999998731461022124577788777
Q gi|254780867|r 64 IGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALY 143 (478)
Q Consensus 64 ~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~ 143 (478)
T Consensus 72 ~~~~~~f~~D~~S~~f~~vv~~Is~~V~~yS~~YM~~d~~-~~rF~~~l~lF~~sMl~lv~s~Nl~~lfigWEgvgl~Sy 150 (598)
T MTH00066 72 FNINSSFKFDQYSILFLPIALFVTWSILEFAIWYMHSDPK-INRFFKYLLIFLIAMMILVTANNLFQLFIGWEGVGIMSF 150 (598)
T ss_pred CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3617775328628999999999999999997897078998-148999999999999999998059999999999999999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76653200013445555540146204679988988530010000012222111013431000012222112344444321
Q gi|254780867|r 144 VLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALV 223 (478)
Q Consensus 144 ~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~f 223 (478)
T Consensus 151 lLI~~~~~~~~a~~aa~~a~l~nriGd~~lll~i~~l~~~~gs~~~~~~~~~~~---~~~~---~~l~lilaa~~KSAQf 224 (598)
T MTH00066 151 LLIGWWHARSDANTAALQAVLYNRVGDIGLILSMAWLAMNTNSWELQQIFLLYD---NSTL---PLLGLILAATGKSAQF 224 (598)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC---HHHH---HHHHHHHHHHHHHCCC
T ss_conf 999887497678999999999997759999999999999839810999987464---0699---9999999998743318
Q ss_pred CCCHHHHHHHHHHCCCCCCCCCC-CEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10001210122100123333210-00002321111124400011222100000122210222200000124454435642
Q gi|254780867|r 224 PFHMWIPDVYEGSPMFMTAFLAT-IPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302 (478)
Q Consensus 224 PfH~Wlp~a~~~ap~~~salls~-~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAyS 302 (478)
T Consensus 225 P~h~WLP~AMe-aPTPVSALlHSsTmV~AGVylLiR~~~~~~~-~~~~~~~~l~lG~lT~l~a~~~Al~Q~DiKkilAyS 302 (598)
T MTH00066 225 GLHPWLPAAME-GPTPVSALLHSSTMVVAGIFLLIRFHPLLEN-NQTALTICLCLGALTTLFTAACALTQNDIKKIVAFS 302 (598)
T ss_pred CCCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 67042266614-8996023331258988508898998878741-699999999999999999999998632188999989
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 11124421111112157788886430023201001100002678740876455021046652321147899998653036
Q gi|254780867|r 303 SIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAG 382 (478)
Q Consensus 303 si~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~G 382 (478)
T Consensus 303 T~SQLG~M~~~iglg~~--~lA~fHl~~HA~FKAlLFL~aG~iIh~~~-~~qDir~mGgl~~~mP~T~~~~~ig~laL~G 379 (598)
T MTH00066 303 TSSQLGLMMVTIGLNQP--QLAFFHICTHAFFKAMLFLCSGSIIHSLN-DEQDIRKMGGLQNMLPMTTSCLTIGSLALTG 379 (598)
T ss_pred HHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 99899999999872519--89999999999999999983048986357-7135988089887766999999999999964
Q ss_pred CCHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 65000067599999999962849-999999999999999999999999649987786556733-2189999999999
Q gi|254780867|r 383 IPPFAGFFGKYFLLISAVKREFY-VLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE-MRLFIFGSILFVT 457 (478)
Q Consensus 383 lPp~~GF~sK~~i~~~~~~~~~~-~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 457 (478)
T Consensus 380 ~PflsGF~SKD~Ile~~~~~~~n~~~~~~~~~~~~lT~~Ys~Rl~~~~~~~~~~~~~~~~~~E~~~~m~~pl~~La~ 456 (598)
T MTH00066 380 TPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYFSSMKFPRSLPLSPINENNKLIINPIKRLAW 456 (598)
T ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 40432887589999998857458999999999999999999999999964899888777878896789999999999