HHsearch alignment for GI: 254780867 and conserved domain: MTH00068
>MTH00068 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=517.34 Aligned_cols=403 Identities=15% Similarity=0.205 Sum_probs=344.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 0031676410079999999999999999999999632100-224206679999999999873146102212457778877
Q gi|254780867|r 64 IGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPF-SCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFAL 142 (478)
Q Consensus 64 ~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~-~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~ 142 (478)
T Consensus 50 ~~~~~~~gvD~lS~~li~Lt~~l~~l~ilaS~~~~~~~~~~r~~~f~~l~l~l~~~l~~~F~s~dl~lFyiffE~~LIp~ 129 (458)
T MTH00068 50 MFTNKYLGIDQISSPLLILTCWLLPLMILASQNHLKNNPLNRQRMYISMLIILQLTLILAFSATELILFYIAFEATLIPT 129 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67728880178689999999999999999957998418520388999999999999999999968999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77665320001344555554014620467998898853001000001222211101343100001222211234444432
Q gi|254780867|r 143 YVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMAL 222 (478)
Q Consensus 143 ~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~ 222 (478)
T Consensus 130 ~~LI~~wG~~~~r~~A~~~~~~yT~~gSl~lL~~i~~ly~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~llaF~vK~p~ 209 (458)
T MTH00068 130 LIIITRWGNQAERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLTLLELMPPMQLMTYTNKIWWLACLLAFMVKMPL 209 (458)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999869976899999999999999999999999999997599739999998877543679999999999999997678
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11000121012210012333321000002321111124400011222100000122210222200000124454435642
Q gi|254780867|r 223 VPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302 (478)
Q Consensus 223 fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAyS 302 (478)
T Consensus 210 ~p~H~WLP~Ah~eAP~~~S~ilagvllK~G~YgliR~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~Q~DlKrliAYS 289 (458)
T MTH00068 210 YGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISIMLTPLSKELSYPFIILALWGVLMTSLICMRQTDLKSLIAYS 289 (458)
T ss_pred CCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 88886661654459807899999999999899999997514425899999999999999999999999823666999998
Q ss_pred CCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 111244211111121-5778888643002320100110000267874087645502104665232114789999865303
Q gi|254780867|r 303 SIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA 381 (478)
Q Consensus 303 si~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~ 381 (478)
T Consensus 290 SvshmG~i~~gi~~~~~~g~~Gal~~mi~Hgl~ss~LF~l~g~~y~r~~--tr~i~~~~Gl~~~~P~~~~~~~i~~la~~ 367 (458)
T MTH00068 290 SVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTH--SRTLLLLRGAQTILPLMATWWLLINLSNM 367 (458)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEHHHHCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 7999999999999737688999999999999999999999999997048--62488848955554899999999999971
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHH
Q ss_conf 6650000675999999999628499999999999999999999999996499877865---5673321899999999999
Q gi|254780867|r 382 GIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV---VVAKEMRLFIFGSILFVTG 458 (478)
Q Consensus 382 GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 458 (478)
T Consensus 368 g~Pp~~gF~gE~~il~~~~~~~-~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~~~~~~~~~~~rE~~ll~lh~~pl~~ 446 (458)
T MTH00068 368 ALPPSPNLWGELTIMVSLFNWS-NWTILITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLL 446 (458)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 7887564899999999999984-999999999999999999999999976998152015899718999999999999999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99997676589
Q gi|254780867|r 459 YFLIENILNSS 469 (478)
Q Consensus 459 ~~~~~~~~~~~ 469 (478)
T Consensus 447 l~~~p~li~~~ 457 (458)
T MTH00068 447 LILKPELISGM 457 (458)
T ss_pred HHHHHHHHHCC
T ss_conf 99839998334