HHsearch alignment for GI: 254780867 and conserved domain: MTH00105
>MTH00105 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=424.21 Aligned_cols=301 Identities=24% Similarity=0.456 Sum_probs=262.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 24206679999999999873146102212457778877776653200013445555540146204679988988530010
Q gi|254780867|r 105 CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184 (478)
Q Consensus 105 ~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~ 184 (478)
T Consensus 3 ~~~~ll~l~~~~~G~l~~~sS~n~~~l~v~lEl~~ls~~~l~~-~~~~~~s~eaa~KYfli~~~~S~i~L~gi~~~~~~~ 81 (345)
T MTH00105 3 PLILIIILSTLILGTMITMISSHWLLAWIGLEMNMLAIIPILM-KKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYS 81 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6999999999999999999998899999999999999999998-289942899999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 00001222211101343100001222211234444432110001210122100123333210000023211111244000
Q gi|254780867|r 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFW 264 (478)
Q Consensus 185 gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~ 264 (478)
T Consensus 82 g~~~~~~~~~~~-----------~~~li~~~l~~Klg~~PfH~WlPdv~~~~~~~~~~~l~t~~Kia~l~il~~~~~~~~ 150 (345)
T MTH00105 82 GQWTITKITNPL-----------ASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGLILLTWQKLAPLSILYQISPSIN 150 (345)
T ss_pred HCHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 375788987799-----------999999999999803414877989997147999999999999999999999998730
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHH
Q ss_conf 11222100000122210222200000124454435642111244211111121577888864300232010011000026
Q gi|254780867|r 265 PMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILS 344 (478)
Q Consensus 265 ~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 344 (478)
T Consensus 151 ------~~il~~~~~lS~i~G~~~al~Q~~lKrlLAYSSIsh~G~ml~~l~~~~~---~~~~y~~~Y~~~~~~lf~~~~~ 221 (345)
T MTH00105 151 ------PNLLLTMAILSILVGGWGGLNQTQLRKILAYSSIAHMGWMTAILTYNPT---LTLLNLTIYIIMTLTMFMLLML 221 (345)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------9999999999999999999866013189999999889999999998499---9999999999999999999999
Q ss_pred HHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78740876455021046652321147899998653036650000675999999999628499999999999999999999
Q gi|254780867|r 345 LRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424 (478)
Q Consensus 345 ~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~ 424 (478)
T Consensus 222 ------~~~~~i~~l~gl~~~~p~~~~~~~i~llSLaGiPP~~GF~~K~~ii~~~i~~~~~~l~~ilil~S~isl~yYlR 295 (345)
T MTH00105 222 ------NSSTTTLSLSHTWNKTPLMTSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIIMPTLMAITALLNLYFYMR 295 (345)
T ss_pred ------HCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf ------57662998857553139999999999999853226568999999999999818499999999999999999999
Q ss_pred HHHHHHCC
Q ss_conf 99999649
Q gi|254780867|r 425 VISIMWFD 432 (478)
Q Consensus 425 ~~~~~f~~ 432 (478)
T Consensus 296 ii~~~~l~ 303 (345)
T MTH00105 296 LIYSTSLT 303 (345)
T ss_pred HHHHHHHH
T ss_conf 99999996