HHsearch alignment for GI: 254780867 and conserved domain: MTH00110
>MTH00110 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=512.99 Aligned_cols=413 Identities=17% Similarity=0.214 Sum_probs=350.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 99997132210031676410079999999999999999999999632100-22420667999999999987314610221
Q gi|254780867|r 54 FFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPF-SCFEFPVIMLMAVLGMLCMISANDMISFY 132 (478)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~-~~~~f~~l~l~~~~g~~~~~~s~~l~~~~ 132 (478)
T Consensus 40 ~~~~~~~~~~~~~~~~~~~D~lS~~li~Ls~~i~~l~~laS~~~~~~~~~~~~~~f~~~~l~l~~~l~~~F~~~dl~~FY 119 (459)
T MTH00110 40 LLLNQLNDNSLNFSLLFFSDSLSTPLLILTTWLLPLMLMASQNHLSKEPLTRKKLYITMLILLQLFLIMTFTATELIMFY 119 (459)
T ss_pred HHHHCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99956787764311576014868999999999999999996898841751256799999999999999999984899999
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 24577788777766532000134455555401462046799889885300100000122221110134310000122221
Q gi|254780867|r 133 MSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLI 212 (478)
Q Consensus 133 v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll 212 (478)
T Consensus 120 iffE~~LIP~~~LI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gs~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (459)
T MTH00110 120 ILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLPNSWSNNLLWLAC 199 (459)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999999984995799999999999999999999999999999759860999998875145047999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 12344444321100012101221001233332100000232111112440001122210000012221022220000012
Q gi|254780867|r 213 LVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292 (478)
Q Consensus 213 ~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q 292 (478)
T Consensus 200 ~laF~vK~p~fp~H~WLP~AhveAP~~gSmiLAgvLlKlG~YGl~R~~~~~~~~~~~~~~~~i~l~l~g~i~~s~~~l~Q 279 (459)
T MTH00110 200 MMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITILLNPLTEFMAYPFLMLSLWGMIMTSSICLRQ 279 (459)
T ss_pred HHHHHHHCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999974888886657253250975999999999999989999999999847899999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHH
Q ss_conf 4454435642111244211111121-577888864300232010011000026787408764550210466523211478
Q gi|254780867|r 293 KDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTC 371 (478)
Q Consensus 293 ~d~KrllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~ 371 (478)
T Consensus 280 ~DlK~LiAYSSVsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~~y~r~~--tR~l~~~~Gl~~~~P~~~~ 357 (459)
T MTH00110 280 TDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIH--SRTMILARGLQTLLPLMAT 357 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHHHHHHH
T ss_conf 99999999977999999999999755899999999999999999999998879988618--6067871980456589999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCHHH
Q ss_conf 999986530366500006759999999996284999999999999999999999999964998778655---67332189
Q gi|254780867|r 372 ALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVV---VAKEMRLF 448 (478)
Q Consensus 372 ~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~---~~~~~~~~ 448 (478)
T Consensus 358 ~~~l~~lan~g~Pp~~~F~gE~~il~~~~~~~-~~~~~~~~~~~~lsa~Ysl~l~~~~~~G~~~~~~~~~~~~~~re~~~ 436 (459)
T MTH00110 358 WWLLASLTNLALPPTINLIGELFVIMSSFSWS-NITIILMGLNIVITALYSLYMLITTQRGKLTHHINNIKPSFTRENTL 436 (459)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
T ss_conf 99999998717987464899999999999985-99999999999999999999999987799802124789960889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999997676589
Q gi|254780867|r 449 IFGSILFVTGYFLIENILNSS 469 (478)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~ 469 (478)
T Consensus 437 ~~~h~~pl~~l~l~P~~ilg~ 457 (459)
T MTH00110 437 MALHLLPLLLLSLNPKIILGP 457 (459)
T ss_pred HHHHHHHHHHHHHCHHHHHCC
T ss_conf 999999999999787987189