HHsearch alignment for GI: 254780867 and conserved domain: MTH00124
>MTH00124 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=515.40 Aligned_cols=405 Identities=17% Similarity=0.195 Sum_probs=346.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 3221003167641007999999999999999999999963210-022420667999999999987314610221245777
Q gi|254780867|r 60 PYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKP-FSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQ 138 (478)
Q Consensus 60 ~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~-~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~ 138 (478)
T Consensus 46 ~~~~~~~~~~~g~D~lS~~li~Lt~~i~~l~il~S~~~~~~~~~~~~~~F~~~~l~l~~~l~~~F~s~dl~~FyiffE~~ 125 (457)
T MTH00124 46 YYPTKNSNQWLGIDQISAPLLVLSCWLLPLMIMASQNHLQHEPTQRKRTFITTLILLQPFLILAFSATELMLFYIMFEAT 125 (457)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 30277887999258878999999999999999998799852740028899999999999999999995899999999999
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 88777766532000134455555401462046799889885300100000122221110134310000122221123444
Q gi|254780867|r 139 SFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFF 218 (478)
Q Consensus 139 ~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~ 218 (478)
T Consensus 126 lIp~~lLI~~wG~~~er~~A~~~~~~yT~~gSl~lL~~i~~l~~~~gt~~~~~~~~~~~~~~~~~~~~~~~l~~~laF~v 205 (457)
T MTH00124 126 LIPTLILITRWGNQPERLNAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTLTNSWTNLLLWLALLTAFMV 205 (457)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999886895899999999999999989999999999999769862999997624212417999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44321100012101221001233332100000232111112440001122210000012221022220000012445443
Q gi|254780867|r 219 KMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRL 298 (478)
Q Consensus 219 K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~Krl 298 (478)
T Consensus 206 K~p~fp~H~WLP~Ah~eAP~~gSmiLAgvllKlG~YgliR~~~~~~~~~~~~~~~~i~l~l~g~i~~sl~al~Q~DlKrl 285 (457)
T MTH00124 206 KMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSSICLRQTDLKSL 285 (457)
T ss_pred HCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66899888762056433870799999999999999999999998515689999999999999999999999761019999
Q ss_pred CCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 5642111244211111121-577888864300232010011000026787408764550210466523211478999986
Q gi|254780867|r 299 MAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFL 377 (478)
Q Consensus 299 lAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~ 377 (478)
T Consensus 286 iAYSSVsHMG~v~~gi~~~~~~g~~Ga~~~miaHgl~ss~LF~lag~iy~r~~--tr~i~~~~Gl~~~~P~~~~~~~i~~ 363 (457)
T MTH00124 286 IAYSSVSHMGLVIAAILIQTQWSLSGAMILMIAHGLTSSMLFCLANTNYERTH--SRTLLLTRGLQLLLPLMTTWWLLAN 363 (457)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99989999999999999679500689999999899999999999999999618--7159984990555788999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHH
Q ss_conf 53036650000675999999999628499999999999999999999999996499877865---567332189999999
Q gi|254780867|r 378 FSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV---VVAKEMRLFIFGSIL 454 (478)
Q Consensus 378 lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~~ 454 (478)
T Consensus 364 la~~g~Pp~~gF~gE~lil~~~~~~~-~~~~~~~~~~~~lsa~YsL~l~~~~~~G~~~~~~~~~~~~~~re~~~l~~h~~ 442 (457)
T MTH00124 364 LTNMALPPTINLMGELTIISSLFNWS-PTTIILTGLGTLLTASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIL 442 (457)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99750644261999999999999997-99999999999999999999999987599804124789983899999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999976765
Q gi|254780867|r 455 FVTGYFLIENILN 467 (478)
Q Consensus 455 ~~~~~~~~~~~~~ 467 (478)
T Consensus 443 pl~~l~~~p~l~~ 455 (457)
T MTH00124 443 PLLLLILKPELIS 455 (457)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999996356724