HHsearch alignment for GI: 254780867 and conserved domain: MTH00144
>MTH00144 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=413.02 Aligned_cols=305 Identities=26% Similarity=0.474 Sum_probs=264.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 24206679999999999873146102212457778877776653200013445555540146204679988988530010
Q gi|254780867|r 105 CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184 (478)
Q Consensus 105 ~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~ 184 (478)
T Consensus 5 ~p~~~~f~~l~~~g~~~~~ss~~~~~l~v~lEl~sl~~~~Li~~~~-~~~s~eaa~KYfl~~~~~S~~~L~gi~l~y~~~ 83 (329)
T MTH00144 5 SPSNLLFLFVMLMGTLLSLSSSHWLGVWVGLELNLIGFLPLLNIKG-KSSEKESSMKYFIIQSLGSSLLIMGSVIMYNMS 83 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8799999999999999999998999999999999999999997599-963899999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCC
Q ss_conf 00001222211101343100001222211234444432110001210122100123333210000023211111244000
Q gi|254780867|r 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFW 264 (478)
Q Consensus 185 gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~ 264 (478)
T Consensus 84 g~~~~~------------------~~li~~gl~~Klg~~PfH~Wlpdv~~~~~~~~~~~l~t~~Ki~~~~~l~~~~~~-- 143 (329)
T MTH00144 84 FSSSFF------------------SLLLLSGLVLKLGGFPFHFWVPSVTKGLSWLSLFLMLTWQKVAPLFLLSLILDL-- 143 (329)
T ss_pred HCHHHH------------------HHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_conf 566999------------------999999999987544176407889814879999999999999999999999612--
Q ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHH
Q ss_conf 11222100000122210222200000124454435642111244211111121577888864300232010011000026
Q gi|254780867|r 265 PMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILS 344 (478)
Q Consensus 265 ~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~ 344 (478)
T Consensus 144 ---~~~~~~l~~l~~lS~iiG~l~al~q~~iKrlLAYSSI~~~G~ml~~i~~~~---~~~~~y~~~y~~~~~~l~~~~~- 216 (329)
T MTH00144 144 ---NLLLMSLMVISVLSAIVGSIGGLNQTSVRLMLAYSSISHLGWMLSGILIGS---SLMWGYFLIYSLSLGFLFYSLS- 216 (329)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-
T ss_conf ---107999999999999999999874421327889868988999999999869---9999999999999999999999-
Q ss_pred HHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78740876455021046652321147899998653036650000675999999999628499999999999999999999
Q gi|254780867|r 345 LRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424 (478)
Q Consensus 345 ~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~ 424 (478)
T Consensus 217 --------~~~~~~~~~~~~~~~~~~~~~~i~~lSlaGiPP~~GF~~K~~il~~~~~~~~~~l~~i~ll~S~is~~yYlr 288 (329)
T MTH00144 217 --------GGDCLSMKSLTSLNPSNNLSISLLLLSLGGLPPFLGFLSKLLVLLSSMEMNMILLIVALILGSLISLYFYLN 288 (329)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------879999987988719999999999999986547877999999999999858599999999999999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999996499877865567332
Q gi|254780867|r 425 VISIMWFDQSTECVVVVAKEM 445 (478)
Q Consensus 425 ~~~~~f~~~~~~~~~~~~~~~ 445 (478)
T Consensus 289 i~~~~~~~~~~~~~~~~~~~~ 309 (329)
T MTH00144 289 FFYSLVIKSYFLSNSTNMKSL 309 (329)
T ss_pred HHHHHHHHCCCCCCCHHHHHH
T ss_conf 999999867999984578888