HHsearch alignment for GI: 254780867 and conserved domain: MTH00160
>MTH00160 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=391.38 Aligned_cols=308 Identities=28% Similarity=0.479 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 06679999999999873146102212457778877776653200013445555540146204679988988530010000
Q gi|254780867|r 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT 187 (478)
Q Consensus 108 f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~ 187 (478)
T Consensus 6 ~~i~~~~~~~g~l~~~ss~~~~~lwv~lEi~~l~~~~l~~-~~~~~~s~ea~~KYfi~q~~~S~~~L~~~~~~~~~~~~~ 84 (336)
T MTH00160 6 KILFLSTLILGTLISISSNSWFGAWMGLEINLLSFIPLIS-NKKNLLSSESSLKYFLIQALASSMLLFSIILMMLNSFFN 84 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999998999999999999999999998-489941799999999999999999999999999998777
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCC
Q ss_conf 01222211101343100001222211234444432110001210122100123333210000023211111244000112
Q gi|254780867|r 188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPML 267 (478)
Q Consensus 188 ~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~ 267 (478)
T Consensus 85 ~~~-----------------~~~li~~~l~~Klg~~PfH~Wlpdv~~~~~~~~~~~lst~~Ki~pl~~l~~~~------- 140 (336)
T MTH00160 85 NSF-----------------SSMMINSSLLLKLGAAPFHFWFPSVMEGLSWINCFILMTWQKIAPLILLSYII------- 140 (336)
T ss_pred HHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf 899-----------------99999999999986402886599998478789999999999999999999998-------
Q ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHH
Q ss_conf 22100000122210222200000124454435642111244211111121577888864300232010011000026787
Q gi|254780867|r 268 SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRR 347 (478)
Q Consensus 268 ~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~ 347 (478)
T Consensus 141 -~~~~~l~~~~~lS~~~G~~~al~q~~iKrllaySSI~~~G~ml~~~~~~~~---~~~~y~~~Y~~~~~~~~~~~----~ 212 (336)
T MTH00160 141 -NINSFIIILIILSAIIGALGGLNQTSLRKLLAYSSINHLGWMLSAMMISEN---LWLIYFLIYSIISLSIILLF----N 212 (336)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----H
T ss_conf -578999999999999999987747778999999889889999999998699---99999999999999999999----8
Q ss_pred HCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 40876455021046652321147899998653036650000675999999999628499999999999999999999999
Q gi|254780867|r 348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVIS 427 (478)
Q Consensus 348 ~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~ 427 (478)
T Consensus 213 ~--~~~~~~~~~~~~~~~~p~~~~~~~i~~lSL~GiPP~~GF~~K~~ii~~~~~~~~~~l~~~~il~S~is~~yYlri~~ 290 (336)
T MTH00160 213 K--FNIFHLNQLFNSMNMSKIIKFLLFLNLLSLGGLPPFLGFFPKWIVIQFLILNNMYFLLFILIMSSLITLYFYLRISY 290 (336)
T ss_pred H--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8--36446998865543149999999999987668851416899999999999837299999999999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99649987786556733218999
Q gi|254780867|r 428 IMWFDQSTECVVVVAKEMRLFIF 450 (478)
Q Consensus 428 ~~f~~~~~~~~~~~~~~~~~~~~ 450 (478)
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~ 313 (336)
T MTH00160 291 SSFMLNYSENKWNLNKKNKSMIL 313 (336)
T ss_pred HHHHCCCCCCCHHHHCCCHHHHH
T ss_conf 99975898753156405427999