HHsearch alignment for GI: 254780867 and conserved domain: MTH00165
>MTH00165 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=491.24 Aligned_cols=390 Identities=18% Similarity=0.257 Sum_probs=318.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 10031676410079999999999999999999999632100224206679999999999873146102212457778877
Q gi|254780867|r 63 GIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFAL 142 (478)
Q Consensus 63 ~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~ 142 (478)
T Consensus 41 ~~~~~~~~~~D~~S~~f~~~v~~Is~~V~~yS~~YM~~d~~~-~rF~~~l~lFv~sM~~lv~s~nl~~l~lgWEglGl~S 119 (571)
T MTH00165 41 SSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDKNI-NRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVS 119 (571)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 706388773485289999999999999999988983799984-2899999999999999999804999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77665320001344555554014620467998898853001000001222211101343100001222211234444432
Q gi|254780867|r 143 YVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMAL 222 (478)
Q Consensus 143 ~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~ 222 (478)
T Consensus 120 ylLI~fy~-~~~s~~a~~~t~l~nRiGD~~ll~~i~~~~~-~gs~~~~~~~~~~~~~---~~~~~~~~ll~laa~~KSAQ 194 (571)
T MTH00165 120 YCLVIYYQ-NVKSYNAGMLTALSNRIGDVAILLSIAWMLN-FGSWNFIFYLDSMSNS---FEMLLIGFLIILAAMTKSAQ 194 (571)
T ss_pred HHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHCC
T ss_conf 99981368-8689999999999998769999999999999-5772699998763033---08999999999999887321
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1100012101221001233332100-000232111112440001122210000012221022220000012445443564
Q gi|254780867|r 223 VPFHMWIPDVYEGSPMFMTAFLATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAY 301 (478)
Q Consensus 223 fPfH~Wlp~a~~~ap~~~salls~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAy 301 (478)
T Consensus 195 ~Pfh~WLP~AM~-aPTPVSALvHssTlVtAGvylliR~~~~~~~--~~~~~~l~~ig~~T~l~a~~~Al~q~DiKkiiAy 271 (571)
T MTH00165 195 IPFSAWLPAAMA-APTPVSALVHSSTLVTAGVYLLIRFNPLLSG--SFFSKLLLLISSLTMFMAGLGANFEFDLKKIIAL 271 (571)
T ss_pred CCCCHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 776221167645-8972899998768998889999998898521--6899999999999999999999976407789898
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 21112442111111215778888643002320100110000267874087645502104665232114789999865303
Q gi|254780867|r 302 SSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA 381 (478)
Q Consensus 302 Ssi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~ 381 (478)
T Consensus 272 ST~SQlG~M~~~~glg~~~--la~fHl~~HA~fKAlLFl~aG~vIh~~~-~~qDir~mggl~~~~P~t~~~~~i~~lsL~ 348 (571)
T MTH00165 272 STLSQLGLMMSILSLGFYK--LAFFHLLTHALFKALLFMCAGVIIHSMG-GSQDIRFMGGLSKSMPLTSSCFNVSNLALC 348 (571)
T ss_pred HHHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7898999999999805599--9999999999999999983329999727-973088866965424699999999999985
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 665000067599999999962849-9999999999999999999999996499877865567332189999999999999
Q gi|254780867|r 382 GIPPFAGFFGKYFLLISAVKREFY-VLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYF 460 (478)
Q Consensus 382 GlPp~~GF~sK~~i~~~~~~~~~~-~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (478)
T Consensus 349 G~PflsGFySKD~IlE~~~~~~~~~~~~~~~~~~~~lT~~YS~Rl~~~~~~~~~~~~~~~~~~~~~~~m~~pl~~L~~~s 428 (571)
T MTH00165 349 GFPFLAGFYSKDLILEMVFMSNLNMFSFLLFIFSTGLTVSYSFRLMYYSMTGDFNLSSLNNLSDESYIMLKSMILLLFMS 428 (571)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 35054189888999999987445599999999999978999999999998189989878618889898999999999999
Q ss_pred HHHH
Q ss_conf 9976
Q gi|254780867|r 461 LIEN 464 (478)
Q Consensus 461 ~~~~ 464 (478)
T Consensus 429 i~~G 432 (571)
T MTH00165 429 IFGG 432 (571)
T ss_pred HHHH
T ss_conf 9999