HHsearch alignment for GI: 254780867 and conserved domain: MTH00197
>MTH00197 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00 E-value=0 Score=395.11 Aligned_cols=304 Identities=21% Similarity=0.349 Sum_probs=260.4
Q ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 20667999999999987314610221245777887777665320001344555554014620467998898853001000
Q gi|254780867|r 107 EFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186 (478)
Q Consensus 107 ~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs 186 (478)
T Consensus 3 ~~~~~~l~~~~g~l~~vsS~n~~~~wvglEl~~l~~~~li~~~~-~~~s~ea~~KYFiiq~~gS~~~L~g~~l~~~~~~~ 81 (325)
T MTH00197 3 SSFFFYIFMVGGVLLSLSSSNWFLVWVGLEMNLICFIPLLSQAK-SLSEIESAFKYFLFQEVGSYLVLVGGLLSFLPLPL 81 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999999999999999999999999998699-93189999999999999999999999999999863
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf 00122221110134310000122221123444443211000121012210012333321000002321111124400011
Q gi|254780867|r 187 TGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM 266 (478)
Q Consensus 187 ~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~ 266 (478)
T Consensus 82 ~~~~~-----------------~~li~~gl~~KlG~~PfH~W~p~v~~~~~~~~~~ll~t~~Ki~pl~il~~~~~~---- 140 (325)
T MTH00197 82 ETLGW-----------------GALVISGLSVKLGVAPFHFWVPPVVSSVSWFNCFLLLVWQKLAPLFILASLSSS---- 140 (325)
T ss_pred HHHHH-----------------HHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf 89999-----------------999999999985765301044788767719999999999999999999995433----
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHH
Q ss_conf 22210000012221022220000012445443564211124421111112157788886430023201001100002678
Q gi|254780867|r 267 LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLR 346 (478)
Q Consensus 267 ~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~ 346 (478)
T Consensus 141 ----~~~l~~~~~lS~~~G~i~al~Q~~iKrlLAYSSI~h~G~~l~~~~~~---~~~~~~y~~~Y~~~~~~~~~~l~~-- 211 (325)
T MTH00197 141 ----KIGLSWCGVTSVLWGAIGMMGQSNIRQILAYSSINQTGWMLSVIVYS---PSILPFYFLIYFTIMVALLLFLSQ-- 211 (325)
T ss_pred ----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf ----68999999999999876403404402999998898899999999985---999999999999999999999999--
Q ss_pred HHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 74087645502104665232114789999865303665000067599999999962849999999999999999999999
Q gi|254780867|r 347 RKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVI 426 (478)
Q Consensus 347 ~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~ 426 (478)
T Consensus 212 ----~~~~~~~~~~~l~~~~~~~~~~~~l~~lSLaGiPPf~GF~~K~~ii~~~i~~~~~~l~~i~ll~S~isl~yYLrl~ 287 (325)
T MTH00197 212 ----MNFYASFSQKNVPDTMSWGLMLLGLSLLSLSGFPPLVGFFPKWLSVEVLLSSGSSLLTFLVMIASCFSLYAYISLG 287 (325)
T ss_pred ----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----8770898987266536999999999999986304386699999999999982839999999999999999999999
Q ss_pred HHHHCCCCCCCCCCCCCCC
Q ss_conf 9996499877865567332
Q gi|254780867|r 427 SIMWFDQSTECVVVVAKEM 445 (478)
Q Consensus 427 ~~~f~~~~~~~~~~~~~~~ 445 (478)
T Consensus 288 ~~~~~~~~~~~~~~~~~~~ 306 (325)
T MTH00197 288 YKILNWAKNVLMSISPGNY 306 (325)
T ss_pred HHHHHCCCCCCCCCCCHHH
T ss_conf 9999809876477784057