HHsearch alignment for GI: 254780867 and conserved domain: MTH00197

>MTH00197 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=395.11  Aligned_cols=304  Identities=21%  Similarity=0.349  Sum_probs=260.4

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf             20667999999999987314610221245777887777665320001344555554014620467998898853001000
Q gi|254780867|r  107 EFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC  186 (478)
Q Consensus       107 ~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs  186 (478)
T Consensus         3 ~~~~~~l~~~~g~l~~vsS~n~~~~wvglEl~~l~~~~li~~~~-~~~s~ea~~KYFiiq~~gS~~~L~g~~l~~~~~~~   81 (325)
T MTH00197          3 SSFFFYIFMVGGVLLSLSSSNWFLVWVGLEMNLICFIPLLSQAK-SLSEIESAFKYFLFQEVGSYLVLVGGLLSFLPLPL   81 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             79999999999999999999999999999999999999998699-93189999999999999999999999999999863


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf             00122221110134310000122221123444443211000121012210012333321000002321111124400011
Q gi|254780867|r  187 TGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM  266 (478)
Q Consensus       187 ~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~  266 (478)
T Consensus        82 ~~~~~-----------------~~li~~gl~~KlG~~PfH~W~p~v~~~~~~~~~~ll~t~~Ki~pl~il~~~~~~----  140 (325)
T MTH00197         82 ETLGW-----------------GALVISGLSVKLGVAPFHFWVPPVVSSVSWFNCFLLLVWQKLAPLFILASLSSS----  140 (325)
T ss_pred             HHHHH-----------------HHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC----
T ss_conf             89999-----------------999999999985765301044788767719999999999999999999995433----


Q ss_pred             CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHH
Q ss_conf             22210000012221022220000012445443564211124421111112157788886430023201001100002678
Q gi|254780867|r  267 LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLR  346 (478)
Q Consensus       267 ~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~  346 (478)
T Consensus       141 ----~~~l~~~~~lS~~~G~i~al~Q~~iKrlLAYSSI~h~G~~l~~~~~~---~~~~~~y~~~Y~~~~~~~~~~l~~--  211 (325)
T MTH00197        141 ----KIGLSWCGVTSVLWGAIGMMGQSNIRQILAYSSINQTGWMLSVIVYS---PSILPFYFLIYFTIMVALLLFLSQ--  211 (325)
T ss_pred             ----HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf             ----68999999999999876403404402999998898899999999985---999999999999999999999999--


Q ss_pred             HHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74087645502104665232114789999865303665000067599999999962849999999999999999999999
Q gi|254780867|r  347 RKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVI  426 (478)
Q Consensus       347 ~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~  426 (478)
T Consensus       212 ----~~~~~~~~~~~l~~~~~~~~~~~~l~~lSLaGiPPf~GF~~K~~ii~~~i~~~~~~l~~i~ll~S~isl~yYLrl~  287 (325)
T MTH00197        212 ----MNFYASFSQKNVPDTMSWGLMLLGLSLLSLSGFPPLVGFFPKWLSVEVLLSSGSSLLTFLVMIASCFSLYAYISLG  287 (325)
T ss_pred             ----HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             ----8770898987266536999999999999986304386699999999999982839999999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCCC
Q ss_conf             9996499877865567332
Q gi|254780867|r  427 SIMWFDQSTECVVVVAKEM  445 (478)
Q Consensus       427 ~~~f~~~~~~~~~~~~~~~  445 (478)
T Consensus       288 ~~~~~~~~~~~~~~~~~~~  306 (325)
T MTH00197        288 YKILNWAKNVLMSISPGNY  306 (325)
T ss_pred             HHHHHCCCCCCCCCCCHHH
T ss_conf             9999809876477784057