HHsearch alignment for GI: 254780867 and conserved domain: MTH00198

>MTH00198 ND2 NADH dehydrogenase subunit 2; Provisional.
Probab=100.00  E-value=0  Score=442.26  Aligned_cols=377  Identities=32%  Similarity=0.600  Sum_probs=307.0

Q ss_pred             HHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC------CHHHH--HH
Q ss_conf             999999999963210022-4206679999999999873146102212457778877776653200------01344--55
Q gi|254780867|r   88 IIIFIKMFSCIYVKPFSC-FEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRK------SVFSI--EA  158 (478)
Q Consensus        88 l~~~~~~~~~~~~~~~~~-~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~------~~~~~--~a  158 (478)
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~lvliv~l~~lllv~s~nwlsiyla~elqtl~lfil~a~~~~~~~~~~~~~~~~~EA  233 (596)
T MTH00198        154 CVILLSLMGLLFLTNERGPGSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGESSEPRRLPSGASNTPPES  233 (596)
T ss_pred             HHHHHHHHHHHHEECCCCCCCCEEHHHHHHHCCHHHEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             99999998888500676888761000788642424200101899999999888899998750356554566557898552


Q ss_pred             HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHH--HHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             555401462046799889885300100000122221--110134310-00012222112344444321100012101221
Q gi|254780867|r  159 ALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT--SLFIGHRSF-VLIVGVVLILVGLFFKMALVPFHMWIPDVYEG  235 (478)
Q Consensus       159 a~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~--~~~~~~~~~-~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~  235 (478)
T Consensus       234 GLKYFVLGAlSSGllLyGcSLiYGfTGst~~~~~i~s~~~~~~~~~l~~~~~G~vFI~vgLlFKlSAaPFHMWaPDVYEG  313 (596)
T MTH00198        234 GLKYWILGAMSSGFYLFGCALYFGFTGNEGMLGTILSATLETTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEG  313 (596)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             02667575777758998799840277763116678763114444221111166999999999886137522668744489


Q ss_pred             HCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             00123333210000023211111244000112221000001222102222000001244544356421112442111111
Q gi|254780867|r  236 SPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFS  315 (478)
Q Consensus       236 ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~  315 (478)
T Consensus       314 aPT~VTaffA~vPKiA~f~~l~rl~~~--------~~ill~~sIlSmiiGai~Ai~QtnIKRLLAYSSIgHmGfiL~Gla  385 (596)
T MTH00198        314 APTPTTALIAIIPKFTVYILLTSLVIT--------SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVS  385 (596)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             867899999987999999999999988--------999999999999999999987887889998721547899999987


Q ss_pred             CHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHH-------------------HCCCCCCCCHHHCCCCCCCCHHHHHHHH
Q ss_conf             215-77888864300232010011000026787-------------------4087645502104665232114789999
Q gi|254780867|r  316 TGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRR-------------------KDGNNIQNISDLAGLSRQDIFLTCALTI  375 (478)
Q Consensus       316 ~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~-------------------~~~~~~~~i~~l~gl~~~~P~~~~~~~i  375 (478)
T Consensus       386 ~Gt~EGIqasliYliIYiiM~Lg~FaiILsL~~~g~~~~~~r~~~~g~~~~~~n~~~ie~IsDLsGLsk~nPiLA~sLaI  465 (596)
T MTH00198        386 AGTYESLQASWTYAVTYLVSALASFTVICTLEEFGTRATTSRKDKQGAFGSPGNYNLVRRLVDLTILSRGQPYIAFSLAI  465 (596)
T ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             25466699999999999999989999999887404433332333210010123542000179765244129199999999


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----------
Q ss_conf             8653036650000675999999999628-------4999999999999999999999999964998778-----------
Q gi|254780867|r  376 FLFSLAGIPPFAGFFGKYFLLISAVKRE-------FYVLAIVALLSSVISAYYYLRVISIMWFDQSTEC-----------  437 (478)
Q Consensus       376 ~~lsl~GlPp~~GF~sK~~i~~~~~~~~-------~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~-----------  437 (478)
T Consensus       466 ~LFSLAGIPPLAGFfaKfYIL~aaIk~~~s~~l~~yYllaiiaVl~SVIs~fYYlRIVKImYFd~~~pl~~~~~~~s~il  545 (596)
T MTH00198        466 VFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVALFAIICTCISAFYYIRIVATIYFNFTRPLIKTKTPLSFIL  545 (596)
T ss_pred             HHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf             99974689713678999999999975311344330689999999988763101363666878626775333456414667


Q ss_pred             -----------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -----------65567332189999999999999997676589999
Q gi|254780867|r  438 -----------VVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMK  472 (478)
Q Consensus       438 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (478)
T Consensus       546 ~W~~il~~~~~~~~~~~~ksilig~t~~~IlFl~i~P~~Ll~ith~  591 (596)
T MTH00198        546 TWESILKGGTSEAEPGGGKSILISIYMYFILFLIICPQPLLLISYE  591 (596)
T ss_pred             HHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCHHHHHCCC
T ss_conf             6898852565200157663342115789999999768799985022