HHsearch alignment for GI: 254780867 and conserved domain: MTH00206
>MTH00206 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=544.89 Aligned_cols=428 Identities=17% Similarity=0.233 Sum_probs=362.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHH
Q ss_conf 30158999999999999999999971322100316764100799999999999999999999996321002-24206679
Q gi|254780867|r 34 RRKNAFHLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFS-CFEFPVIM 112 (478)
Q Consensus 34 ~~~~~~~~~~~~~~~l~i~l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~-~~~f~~l~ 112 (478)
T Consensus 19 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~lS~~l~~L~~~i~~l~~l~S~~~~~~~~~~~~~~f~~l~ 98 (452)
T MTH00206 19 KKKWLWRSTYVSSLLLALLVLLLWSMNMSWSSPNSYLSIDQVSAPLVILSCWLLPLMLLASQQHMKKEPGSRQRIYIFCL 98 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 76999999999999999999998723777010337885557579999999999999999989987408312789999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 99999999987314610221245777887777665320001344555554014620467998898853001000001222
Q gi|254780867|r 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQI 192 (478)
Q Consensus 113 l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l 192 (478)
T Consensus 99 ~~l~~~l~~~f~s~nl~~ffvf~E~~lip~~~LI~~wg~~~~r~~A~~~~~i~t~~gs~~lL~~i~~l~~~~gs~~~~~~ 178 (452)
T MTH00206 99 IFLQLFLILAFLATDLLLFYIAFEATLIPTLLLITRWGAQKERLQAGTYFLFYTLVGSLPLLIALLKLYNSLGSLSMPII 178 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999999997999999999999999999999709988999999999999999999999999999988271489999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 21110134310000122221123444443211000121012210012333321000002321111124400011222100
Q gi|254780867|r 193 ATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP 272 (478)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~ 272 (478)
T Consensus 179 ~~~~~~~~~~----~~~~~~~l~f~vK~~~~pfH~WLP~Ah~eAP~~~S~iLagvllK~G~ygliR~~~~~~~~~~~~~~ 254 (452)
T MTH00206 179 LENLSSYSDN----FWWLACLLAFLVKLPLYGLHLWLPKAHVEAPIAGSMVLAGVLLKLGGYGMMRLSQLLGPSTKLSSE 254 (452)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9884666899----999999999999987861001068777889809999999999999999999998712431589999
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCC
Q ss_conf 000122210222200000124454435642111244211111121-5778888643002320100110000267874087
Q gi|254780867|r 273 IFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGN 351 (478)
Q Consensus 273 ~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~ 351 (478)
T Consensus 255 ~~~~l~~~~~~~~s~~al~Q~DlKrllAYSSishmG~i~~gl~~~~~~g~~gal~~mi~Hgl~~~~LF~~~g~i~~~~~- 333 (452)
T MTH00206 255 PFLILGLWGMIVTSSICLRQTDLKSLIAYSSVSHMGLVAAGIMSGTPWGFSGALMLMIAHGLVSSALFCLANLLYERSH- 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf 9999999999999999998733789999967999999999997378888888899889999999999999889993349-
Q ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 64550210466523211478999986530366500006759999999996284999999999999999999999999964
Q gi|254780867|r 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWF 431 (478)
Q Consensus 352 ~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~ 431 (478)
T Consensus 334 -tr~i~~~~GL~~~~P~~~~~~~i~~ls~~GiPp~~gF~se~~i~~~~~~~~-~~~~~~~~~~~~lsa~Y~l~l~~~~~~ 411 (452)
T MTH00206 334 -TRTLLLNRGLQSIFPLMSFWWLLMFLANLALPPSINFFGELLIISSLFSWS-NWTILLLGLGVLLTAVYSLYMFVMTQH 411 (452)
T ss_pred -CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -802999845587789999999999999873312053999999999999984-999999999999999999999999985
Q ss_pred CCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877865---56733218999999999999999767658
Q gi|254780867|r 432 DQSTECVV---VVAKEMRLFIFGSILFVTGYFLIENILNS 468 (478)
Q Consensus 432 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (478)
T Consensus 412 G~~~~~~~~~~~~~~~e~~~~~~~~~p~~~l~~~p~~~~~ 451 (452)
T MTH00206 412 GPTSKHLKNLSPSTTREHLLLFLHLLPYILLILFPELILG 451 (452)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9993125148998377999999999999999984798609