HHsearch alignment for GI: 254780867 and conserved domain: MTH00206

>MTH00206 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=544.89  Aligned_cols=428  Identities=17%  Similarity=0.233  Sum_probs=362.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHH
Q ss_conf             30158999999999999999999971322100316764100799999999999999999999996321002-24206679
Q gi|254780867|r   34 RRKNAFHLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFS-CFEFPVIM  112 (478)
Q Consensus        34 ~~~~~~~~~~~~~~~l~i~l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~-~~~f~~l~  112 (478)
T Consensus        19 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~lS~~l~~L~~~i~~l~~l~S~~~~~~~~~~~~~~f~~l~   98 (452)
T MTH00206         19 KKKWLWRSTYVSSLLLALLVLLLWSMNMSWSSPNSYLSIDQVSAPLVILSCWLLPLMLLASQQHMKKEPGSRQRIYIFCL   98 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             76999999999999999999998723777010337885557579999999999999999989987408312789999999


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf             99999999987314610221245777887777665320001344555554014620467998898853001000001222
Q gi|254780867|r  113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQI  192 (478)
Q Consensus       113 l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l  192 (478)
T Consensus        99 ~~l~~~l~~~f~s~nl~~ffvf~E~~lip~~~LI~~wg~~~~r~~A~~~~~i~t~~gs~~lL~~i~~l~~~~gs~~~~~~  178 (452)
T MTH00206         99 IFLQLFLILAFLATDLLLFYIAFEATLIPTLLLITRWGAQKERLQAGTYFLFYTLVGSLPLLIALLKLYNSLGSLSMPII  178 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf             99999999999997999999999999999999999709988999999999999999999999999999988271489999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             21110134310000122221123444443211000121012210012333321000002321111124400011222100
Q gi|254780867|r  193 ATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP  272 (478)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~  272 (478)
T Consensus       179 ~~~~~~~~~~----~~~~~~~l~f~vK~~~~pfH~WLP~Ah~eAP~~~S~iLagvllK~G~ygliR~~~~~~~~~~~~~~  254 (452)
T MTH00206        179 LENLSSYSDN----FWWLACLLAFLVKLPLYGLHLWLPKAHVEAPIAGSMVLAGVLLKLGGYGMMRLSQLLGPSTKLSSE  254 (452)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             9884666899----999999999999987861001068777889809999999999999999999998712431589999


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCC
Q ss_conf             000122210222200000124454435642111244211111121-5778888643002320100110000267874087
Q gi|254780867|r  273 IFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGN  351 (478)
Q Consensus       273 ~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~  351 (478)
T Consensus       255 ~~~~l~~~~~~~~s~~al~Q~DlKrllAYSSishmG~i~~gl~~~~~~g~~gal~~mi~Hgl~~~~LF~~~g~i~~~~~-  333 (452)
T MTH00206        255 PFLILGLWGMIVTSSICLRQTDLKSLIAYSSVSHMGLVAAGIMSGTPWGFSGALMLMIAHGLVSSALFCLANLLYERSH-  333 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-
T ss_conf             9999999999999999998733789999967999999999997378888888899889999999999999889993349-


Q ss_pred             CCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             64550210466523211478999986530366500006759999999996284999999999999999999999999964
Q gi|254780867|r  352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWF  431 (478)
Q Consensus       352 ~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~  431 (478)
T Consensus       334 -tr~i~~~~GL~~~~P~~~~~~~i~~ls~~GiPp~~gF~se~~i~~~~~~~~-~~~~~~~~~~~~lsa~Y~l~l~~~~~~  411 (452)
T MTH00206        334 -TRTLLLNRGLQSIFPLMSFWWLLMFLANLALPPSINFFGELLIISSLFSWS-NWTILLLGLGVLLTAVYSLYMFVMTQH  411 (452)
T ss_pred             -CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             -802999845587789999999999999873312053999999999999984-999999999999999999999999985


Q ss_pred             CCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99877865---56733218999999999999999767658
Q gi|254780867|r  432 DQSTECVV---VVAKEMRLFIFGSILFVTGYFLIENILNS  468 (478)
Q Consensus       432 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (478)
T Consensus       412 G~~~~~~~~~~~~~~~e~~~~~~~~~p~~~l~~~p~~~~~  451 (452)
T MTH00206        412 GPTSKHLKNLSPSTTREHLLLFLHLLPYILLILFPELILG  451 (452)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             9993125148998377999999999999999984798609