HHsearch alignment for GI: 254780867 and conserved domain: MTH00208

>MTH00208 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00  E-value=0  Score=502.81  Aligned_cols=386  Identities=18%  Similarity=0.226  Sum_probs=324.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r   65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV  144 (478)
Q Consensus        65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~  144 (478)
T Consensus       100 ~i~~sf~~D~~S~~F~~vvl~Vs~sI~~fS~~YM~~Dp~~-~rF~~~l~lF~~sM~~Lv~s~Nl~~lfiGWeGvGl~Sfl  178 (631)
T MTH00208        100 SFSLSFIFDFYFNLFFSVALIVTWSIIEFSHYYMSNDPNK-NAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFL  178 (631)
T ss_pred             CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             5063121694299999999999999999967870089992-169999999999999999971399999999999999989


Q ss_pred             HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r  145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP  224 (478)
Q Consensus       145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP  224 (478)
T Consensus       179 LI~~w~~r~~a~~aal~a~l~NRiGD~glll~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~-~~~~~l~laa~~KSAQfp  256 (631)
T MTH00208        179 LISWWTTRSDANSSALQAVIYNRIGDIGLLLFFSLSLLNFNSWNLSEILLINNNNS-FLIN-LLLFGLLLAAAGKSAQFG  256 (631)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC-HHHH-HHHHHHHHHHHHHHCCCC
T ss_conf             67664795899999999999998879999999999999958812999998705530-4899-999999999986523075


Q ss_pred             CCHHHHHHHHHHCCCCCCCCCCCE-ECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             000121012210012333321000-0023211111244000112221000001222102222000001244544356421
Q gi|254780867|r  225 FHMWIPDVYEGSPMFMTAFLATIP-KFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSS  303 (478)
Q Consensus       225 fH~Wlp~a~~~ap~~~salls~~~-~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySs  303 (478)
T Consensus       257 lh~WLP~AMe-gPTPVSALlHssTmVtAGVyLliR~~p~~~~-~~~~~~~~l~iG~~T~l~a~~~Al~q~DiKkIiA~ST  334 (631)
T MTH00208        257 LHPWLPAAME-GPTPVSALLHSSTMVVAGVFLLIRTSPLYSN-SPFFNSWCLILGGITALFAASTAISQHDIKKIVAYST  334 (631)
T ss_pred             CCCCCHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             7421056646-9981888885657876216664210751430-0999999999999999999999999987887874110


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf             11244211111121577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r  304 IGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI  383 (478)
Q Consensus       304 i~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl  383 (478)
T Consensus       335 ~SQLG~M~~~iglg~~--~la~fHl~tHA~FKAlLFLcaGsiIH~~~-~~QDiRkMGgl~~~~P~t~~~~~igslaL~G~  411 (631)
T MTH00208        335 TSQLGLMVVAIGLGQP--IIAFFHICTHAFFKAMLFLCSGSIIHSLN-DEQDIRKMGGLSFLLPVTSACIILGSLALSGT  411 (631)
T ss_pred             HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             3078999999971308--89999999999999999982338998268-74479986798642739999999999998286


Q ss_pred             CHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf             500006759999999996284999-999999999999999999999964998778655-673321899999999999
Q gi|254780867|r  384 PPFAGFFGKYFLLISAVKREFYVL-AIVALLSSVISAYYYLRVISIMWFDQSTECVVV-VAKEMRLFIFGSILFVTG  458 (478)
Q Consensus       384 Pp~~GF~sK~~i~~~~~~~~~~~~-~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  458 (478)
T Consensus       412 PflsGFySKD~IiE~~~~s~~n~~~~~l~liat~lTa~YS~Rlif~~f~g~~~~~~~~~i~E~~~~m~~Pl~~La~g  488 (631)
T MTH00208        412 PFLAGFYSKDLILEAGLASLSNFLGIILAFLATLLTAVYSFRIIFFCFSLPPSFSPLSPISEENNNLTNALNRLALG  488 (631)
T ss_pred             CHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             22211503799999999751079999999999999999999999987447898874111777989899999999999