HHsearch alignment for GI: 254780867 and conserved domain: MTH00208
>MTH00208 ND5 NADH dehydrogenase subunit 5; Provisional.
Probab=100.00 E-value=0 Score=502.81 Aligned_cols=386 Identities=18% Similarity=0.226 Sum_probs=324.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 100 ~i~~sf~~D~~S~~F~~vvl~Vs~sI~~fS~~YM~~Dp~~-~rF~~~l~lF~~sM~~Lv~s~Nl~~lfiGWeGvGl~Sfl 178 (631)
T MTH00208 100 SFSLSFIFDFYFNLFFSVALIVTWSIIEFSHYYMSNDPNK-NAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGFLSFL 178 (631)
T ss_pred CCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5063121694299999999999999999967870089992-169999999999999999971399999999999999989
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 179 LI~~w~~r~~a~~aal~a~l~NRiGD~glll~~~~~~~~~~s~~~~~~~~~~~~~~-~~~~-~~~~~l~laa~~KSAQfp 256 (631)
T MTH00208 179 LISWWTTRSDANSSALQAVIYNRIGDIGLLLFFSLSLLNFNSWNLSEILLINNNNS-FLIN-LLLFGLLLAAAGKSAQFG 256 (631)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC-HHHH-HHHHHHHHHHHHHHCCCC
T ss_conf 67664795899999999999998879999999999999958812999998705530-4899-999999999986523075
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCE-ECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 000121012210012333321000-0023211111244000112221000001222102222000001244544356421
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATIP-KFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSS 303 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~~-~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySs 303 (478)
T Consensus 257 lh~WLP~AMe-gPTPVSALlHssTmVtAGVyLliR~~p~~~~-~~~~~~~~l~iG~~T~l~a~~~Al~q~DiKkIiA~ST 334 (631)
T MTH00208 257 LHPWLPAAME-GPTPVSALLHSSTMVVAGVFLLIRTSPLYSN-SPFFNSWCLILGGITALFAASTAISQHDIKKIVAYST 334 (631)
T ss_pred CCCCCHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7421056646-9981888885657876216664210751430-0999999999999999999999999987887874110
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 11244211111121577888864300232010011000026787408764550210466523211478999986530366
Q gi|254780867|r 304 IGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 304 i~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 335 ~SQLG~M~~~iglg~~--~la~fHl~tHA~FKAlLFLcaGsiIH~~~-~~QDiRkMGgl~~~~P~t~~~~~igslaL~G~ 411 (631)
T MTH00208 335 TSQLGLMVVAIGLGQP--IIAFFHICTHAFFKAMLFLCSGSIIHSLN-DEQDIRKMGGLSFLLPVTSACIILGSLALSGT 411 (631)
T ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 3078999999971308--89999999999999999982338998268-74479986798642739999999999998286
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf 500006759999999996284999-999999999999999999999964998778655-673321899999999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVL-AIVALLSSVISAYYYLRVISIMWFDQSTECVVV-VAKEMRLFIFGSILFVTG 458 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~-~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 458 (478)
T Consensus 412 PflsGFySKD~IiE~~~~s~~n~~~~~l~liat~lTa~YS~Rlif~~f~g~~~~~~~~~i~E~~~~m~~Pl~~La~g 488 (631)
T MTH00208 412 PFLAGFYSKDLILEAGLASLSNFLGIILAFLATLLTAVYSFRIIFFCFSLPPSFSPLSPISEENNNLTNALNRLALG 488 (631)
T ss_pred CHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 22211503799999999751079999999999999999999999987447898874111777989899999999999