HHsearch alignment for GI: 254780867 and conserved domain: MTH00217

>MTH00217 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00  E-value=0  Score=569.92  Aligned_cols=396  Identities=20%  Similarity=0.325  Sum_probs=343.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             64100799999999999999999999996321002242066799999999998731461022124577788777766532
Q gi|254780867|r   70 YISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMN  149 (478)
Q Consensus        70 ~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~  149 (478)
T Consensus        76 lgvDgls~~lv~Lt~~l~~i~~l---~s~~~~~~~~~~f~~~~L~~~~~~lGvf~s~Dl~~fyvf~E~~lip~y~LI~~w  152 (482)
T MTH00217         76 FGVDGISIFFIILTALLIPICVL---ISLKSIKFLIKEFLLCLLFIEVLLMGVFTILDLVGFYILFEGILIPMFLIIGIW  152 (482)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             25646779999999999999999---853741142789999999999999999998389999999999999999945364


Q ss_pred             HCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             00013445555540146204679988988530010000012222111013431000012222112344444321100012
Q gi|254780867|r  150 RKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWI  229 (478)
Q Consensus       150 ~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wl  229 (478)
T Consensus       153 g~~~~~~~Aa~k~~l~t~~Gs~~~L~gi~~ly~~~Gt~~~~~l~~~~~~---~~~~~~~~~~~~i~f~vK~~~~PfH~WL  229 (482)
T MTH00217        153 GSREEKIQASYYFFFYTFIGSVFMLLGIFTLYSNAGSTDYQALCCLKIE---KELQYFVFIGFFLSLAIKIPKIPFHIWL  229 (482)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             7898999999999999989999999999999998087429999975044---4689999999999999997052025035


Q ss_pred             HHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             101221001233332100000232111112440001-1222100000122210222200000124454435642111244
Q gi|254780867|r  230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG  308 (478)
Q Consensus       230 p~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G  308 (478)
T Consensus       230 Pda~~~APt~~S~llagvl~K~g~ygliR~~~~l~p~~~~~~~~~i~~l~~itii~ga~~Al~Q~diKrllAYSSIshmG  309 (482)
T MTH00217        230 PQAHVEAPVAGSVVLAGVLLKLGGYGFIRFSWPLLPDAAEYFGPLILTLSLFAIIYGSLTTCRQVDLKRIIAYSSVAHMG  309 (482)
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             05722388068888889888875666699998755003766417999987888999999998831666999998998999


Q ss_pred             CCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf             211111121-5778888643002320100110000267874087645502104665232114789999865303665000
Q gi|254780867|r  309 YALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFA  387 (478)
Q Consensus       309 ~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~  387 (478)
T Consensus       310 ~i~lgl~~~~~~g~~ga~~~~i~H~~~~~~LFl~~g~i~~~~~--t~~i~~~gGL~~~~P~~~~~~~i~~ls~~GlP~~~  387 (482)
T MTH00217        310 LVTLGLFSHTIQGLVAAVFLMLAHGLVSSALFIAVTFLYDRYH--TRLIKYYRGMAITMPLFGMLLLILVLANASIPLSC  387 (482)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             9999999727899999999999999999999999999997138--53799958956659398999999999972578646


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             0675999999999628499999999999999999999999996499877865---5673321899999999999999976
Q gi|254780867|r  388 GFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV---VVAKEMRLFIFGSILFVTGYFLIEN  464 (478)
Q Consensus       388 GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  464 (478)
T Consensus       388 GF~ge~~i~~~~~~~~-~~~~~~a~~~~il~a~Y~l~~~~~v~~g~~~~~~~~~~d~~~~e~~~~~~L~~l~i~~Gl~P~  466 (482)
T MTH00217        388 NFIGEFLSLLAAFEYS-FIAGVLASVGMVLSAGYSIYMYNRICFGAFSKYLYFSRDLNRREFYSILPLVILIIIMGVFPF  466 (482)
T ss_pred             CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf             2899999999999985-999999999999999999999999983898865557799986599999999999999996429


Q ss_pred             HHHHHHHHHH
Q ss_conf             7658999998
Q gi|254780867|r  465 ILNSSIMKIV  474 (478)
Q Consensus       465 ~~~~~~~~~~  474 (478)
T Consensus       467 ~~ld~i~~sv  476 (482)
T MTH00217        467 LVVDEVKGSI  476 (482)
T ss_pred             HHHHHHHHHE
T ss_conf             9997665640