HHsearch alignment for GI: 254780867 and conserved domain: MTH00217
>MTH00217 ND4 NADH dehydrogenase subunit 4; Provisional.
Probab=100.00 E-value=0 Score=569.92 Aligned_cols=396 Identities=20% Similarity=0.325 Sum_probs=343.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 64100799999999999999999999996321002242066799999999998731461022124577788777766532
Q gi|254780867|r 70 YISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMN 149 (478)
Q Consensus 70 ~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~ 149 (478)
T Consensus 76 lgvDgls~~lv~Lt~~l~~i~~l---~s~~~~~~~~~~f~~~~L~~~~~~lGvf~s~Dl~~fyvf~E~~lip~y~LI~~w 152 (482)
T MTH00217 76 FGVDGISIFFIILTALLIPICVL---ISLKSIKFLIKEFLLCLLFIEVLLMGVFTILDLVGFYILFEGILIPMFLIIGIW 152 (482)
T ss_pred ECCCHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 25646779999999999999999---853741142789999999999999999998389999999999999999945364
Q ss_pred HCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 00013445555540146204679988988530010000012222111013431000012222112344444321100012
Q gi|254780867|r 150 RKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229 (478)
Q Consensus 150 ~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wl 229 (478)
T Consensus 153 g~~~~~~~Aa~k~~l~t~~Gs~~~L~gi~~ly~~~Gt~~~~~l~~~~~~---~~~~~~~~~~~~i~f~vK~~~~PfH~WL 229 (482)
T MTH00217 153 GSREEKIQASYYFFFYTFIGSVFMLLGIFTLYSNAGSTDYQALCCLKIE---KELQYFVFIGFFLSLAIKIPKIPFHIWL 229 (482)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7898999999999999989999999999999998087429999975044---4689999999999999997052025035
Q ss_pred HHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 101221001233332100000232111112440001-1222100000122210222200000124454435642111244
Q gi|254780867|r 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG 308 (478)
Q Consensus 230 p~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G 308 (478)
T Consensus 230 Pda~~~APt~~S~llagvl~K~g~ygliR~~~~l~p~~~~~~~~~i~~l~~itii~ga~~Al~Q~diKrllAYSSIshmG 309 (482)
T MTH00217 230 PQAHVEAPVAGSVVLAGVLLKLGGYGFIRFSWPLLPDAAEYFGPLILTLSLFAIIYGSLTTCRQVDLKRIIAYSSVAHMG 309 (482)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05722388068888889888875666699998755003766417999987888999999998831666999998998999
Q ss_pred CCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf 211111121-5778888643002320100110000267874087645502104665232114789999865303665000
Q gi|254780867|r 309 YALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFA 387 (478)
Q Consensus 309 ~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~ 387 (478)
T Consensus 310 ~i~lgl~~~~~~g~~ga~~~~i~H~~~~~~LFl~~g~i~~~~~--t~~i~~~gGL~~~~P~~~~~~~i~~ls~~GlP~~~ 387 (482)
T MTH00217 310 LVTLGLFSHTIQGLVAAVFLMLAHGLVSSALFIAVTFLYDRYH--TRLIKYYRGMAITMPLFGMLLLILVLANASIPLSC 387 (482)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CEEHHHHCCHHHHCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999727899999999999999999999999999997138--53799958956659398999999999972578646
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 0675999999999628499999999999999999999999996499877865---5673321899999999999999976
Q gi|254780867|r 388 GFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV---VVAKEMRLFIFGSILFVTGYFLIEN 464 (478)
Q Consensus 388 GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (478)
T Consensus 388 GF~ge~~i~~~~~~~~-~~~~~~a~~~~il~a~Y~l~~~~~v~~g~~~~~~~~~~d~~~~e~~~~~~L~~l~i~~Gl~P~ 466 (482)
T MTH00217 388 NFIGEFLSLLAAFEYS-FIAGVLASVGMVLSAGYSIYMYNRICFGAFSKYLYFSRDLNRREFYSILPLVILIIIMGVFPF 466 (482)
T ss_pred CHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 2899999999999985-999999999999999999999999983898865557799986599999999999999996429
Q ss_pred HHHHHHHHHH
Q ss_conf 7658999998
Q gi|254780867|r 465 ILNSSIMKIV 474 (478)
Q Consensus 465 ~~~~~~~~~~ 474 (478)
T Consensus 467 ~~ld~i~~sv 476 (482)
T MTH00217 467 LVVDEVKGSI 476 (482)
T ss_pred HHHHHHHHHE
T ss_conf 9997665640