HHsearch alignment for GI: 254780867 and conserved domain: PRK05846
>PRK05846 NADH dehydrogenase subunit M; Reviewed.
Probab=100.00 E-value=0 Score=571.10 Aligned_cols=451 Identities=20% Similarity=0.329 Sum_probs=359.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCC------------CHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999864023015899999999999999999997--1322------------10031676410079999999
Q gi|254780867|r 17 IIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLI--MPYE------------GIGLGGAYISDRFSYFIKAI 82 (478)
Q Consensus 17 i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~--~~~~------------~~~~~~~~~~D~~s~~~~~l 82 (478)
T Consensus 11 l~Pllgall~~l~~~~~~~~~~~~a~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~w~~~~gi~~~l~~D~ls~~~~~l 90 (495)
T PRK05846 11 FLPLIGGLLILLTERAARRLARWIALITTLLTLALSLVLWIGFDPSNPGFQFVEKVPWIPRFGISYHLGVDGISLLLVVL 90 (495)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 99999999999972532789999999999999999999999974788864899864456666806898510878999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999999999999963210022420667999999999987314610221245777887777665320001344555554
Q gi|254780867|r 83 LLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKY 162 (478)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky 162 (478)
T Consensus 91 ~~~v~~~~~l~s~~--~~~~-~~~~f~~~~ll~~~~m~g~~~a~dl~~~fvf~El~~i~sy~Li~~~~~~-~~~~Aa~ky 166 (495)
T PRK05846 91 TALLTPLAVLASWE--EIKK-RVKFYMAALLILEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGK-NRIYAATKF 166 (495)
T ss_pred HHHHHHHHHHHHHH--HCCC-CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHH
T ss_conf 99999999999866--3146-3018999999999999999997629999999999999999999975977-999999999
Q ss_pred HCCCCHHHHHHHHHHHHHHCC-----CCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 014620467998898853001-----000001222211101343100001222211234444432110001210122100
Q gi|254780867|r 163 FVLGAFSSAFLLYGISFIYGF-----TGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSP 237 (478)
Q Consensus 163 ~~~~~~g~~~ll~g~~~~y~~-----~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap 237 (478)
T Consensus 167 ~i~~~~gs~~~L~gi~~l~~~~~~~~~gs~~~~~l~~~~---~~~~~~~~~~~~~~~g~~~K~a~~PfH~WlPday~~ap 243 (495)
T PRK05846 167 FLYTLLGSLLMLVAIIYLVVVYYNAGVGTFDIADLLNTP---LPAGVQYLLFLAFFIAFAVKMPMFPLHTWLPDAHVEAP 243 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCC
T ss_conf 999999999999999999999963454013899998555---77258999999999999998622423322467667899
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1233332100000232111112440001-122210000012221022220000012445443564211124421111112
Q gi|254780867|r 238 MFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFST 316 (478)
Q Consensus 238 ~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~ 316 (478)
T Consensus 244 ~~vsalls~~~~k~g~y~l~R~~~~~f~~~~~~~~~~l~~lg~~t~~~g~~~Al~Q~d~KrllAYSsisq~G~il~g~~~ 323 (495)
T PRK05846 244 TAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFA 323 (495)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53777788999999999889976113530159999999999988899899999998320047899899999999999986
Q ss_pred H-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 1-577888864300232010011000026787408764550210466523211478999986530366500006759999
Q gi|254780867|r 317 G-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFL 395 (478)
Q Consensus 317 ~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i 395 (478)
T Consensus 324 ~~~~~~~~a~~~~~~h~~~k~~lF~~~g~i~~~~g--~~~i~~l~Gl~~~~P~~~~~~~i~~lsl~GiPp~~GF~~k~~i 401 (495)
T PRK05846 324 GNQLGVQGAIFQMISHGLSSAALFLLVGVLYDRLH--TRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLI 401 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHCCCCHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 76999999999999999999999999999999649--8173523784654968899989999998267530518899999
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999996284999999999999999999999999964998778655----6733218999999999999999767658999
Q gi|254780867|r 396 LISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVV----VAKEMRLFIFGSILFVTGYFLIENILNSSIM 471 (478)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (478)
T Consensus 402 ~~~~~~~~-~~~~~~~~~~~~l~~~y~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~Gi~P~~~~~~i~ 480 (495)
T PRK05846 402 LLGSFQVN-PWIAFIATTGLILAAVYSLWLYKRVMFGPVAKEEEAELKDLNGRELLILLPLVALLILLGVYPKPLLDVIH 480 (495)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999874-99999999999999999999999998189895224477899987999999999999999970799999999
Q ss_pred HHHHHC
Q ss_conf 998751
Q gi|254780867|r 472 KIVMSL 477 (478)
Q Consensus 472 ~~~~~l 477 (478)
T Consensus 481 ~a~~~l 486 (495)
T PRK05846 481 PSVENL 486 (495)
T ss_pred HHHHHH
T ss_conf 999999