HHsearch alignment for GI: 254780867 and conserved domain: PRK06459
>PRK06459 hydrogenase 4 subunit B; Validated.
Probab=100.00 E-value=0 Score=474.85 Aligned_cols=356 Identities=19% Similarity=0.304 Sum_probs=297.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410079999999999999999999999632100224206679999999999873146102212457778877776653
Q gi|254780867|r 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM 148 (478)
Q Consensus 69 ~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~ 148 (478)
T Consensus 38 ~~~~~pl~~ff~iii~~v~~~~~~ySi~Y--~~~--~~~~~~l~~lFi~sMllvv~a~n~~~F~v~WElMsL~Sy~LI~~ 113 (578)
T PRK06459 38 GIQEYPYLSFFYIIAGLVWVLASLYSLSY--DYY--GKWLSMLYSLTVLGMIIVLTSDNYLEFLAGWETMTIPSYVIIAL 113 (578)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99827499999999999999999992114--425--15999999999999999999730999999999999999999997
Q ss_pred HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-
Q ss_conf 2000134455555401462046799889885300100000122221110134310000122221123444443211000-
Q gi|254780867|r 149 NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM- 227 (478)
Q Consensus 149 ~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~- 227 (478)
T Consensus 114 ~~~~~---~aa~~y~~~~~~G~~~ll~~~~ll~~~~Gs~~f~~~~~~-----------~~~lL~~~GFg~KaG~~Pfhvh 179 (578)
T PRK06459 114 YRKDW---KPAFTFMAFGELSTVLILAGFALAYSQTGSFNFERLSTQ-----------VPLIITSFGFIIKMGMFPFLVS 179 (578)
T ss_pred CCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHH-----------HHHHHHHHHHHHHHCCCCCHHH
T ss_conf 05550---078999999999999999999999998088248877878-----------9999999999998510510333
Q ss_pred -HHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -1210122100123333210000023211111244000112221000001222102222000001244544356421112
Q gi|254780867|r 228 -WIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306 (478)
Q Consensus 228 -Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q 306 (478)
T Consensus 180 ~WLP~Ah~~aPs~vSal~Sg~m~k~gvyg~~r~~~-l~~~~~~~g~~~~~~G~~s~~~G~l~A~~q~D~KrlLAYSsi~n 258 (578)
T PRK06459 180 EWLPIAHGNAPSNASAVLSATMTLMGVYGILKMES-LSPVSPYLGIFLLAIGAFSILFGALYSYVSDHVKGLLAFSTIEN 258 (578)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11740117899579999999999999999999999-60353599999999999999999999998762899998834998
Q ss_pred CCCCCCCCCCH---------HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 44211111121---------577888864300232010011000026787408764550210466523211478999986
Q gi|254780867|r 307 AGYALIGFSTG---------MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFL 377 (478)
Q Consensus 307 ~G~i~~~l~~~---------~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~ 377 (478)
T Consensus 259 iG~i~~~lGl~~~~~~~~l~~~~~~a~l~h~~nHa~fK~lLFl~aG~v~~~~~~--~~~~~~~gl------t~~~~lig~ 330 (578)
T PRK06459 259 NGAILVALGLYLELVSSDLREFVLFTVIIYSIAHSLAKTGLFLSSGYVEGEYLT--TARSFEYGL------SVLGAVLLA 330 (578)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC--CCHHHCCCH------HHHHHHHHH
T ss_conf 899999999999814505799999999999999999999999710638998625--525640678------999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCH---H-------HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 530366500006759999999996284---9-------999999999999999999999999649987786556733218
Q gi|254780867|r 378 FSLAGIPPFAGFFGKYFLLISAVKREF---Y-------VLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRL 447 (478)
Q Consensus 378 lsl~GlPp~~GF~sK~~i~~~~~~~~~---~-------~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~ 447 (478)
T Consensus 331 ~sisglPP~nGFvseWli~qs~~~~~~~~~~~~~~~~~~~~~~lAlt~ala~~~~vk~~g~~fl~~pr~~~a~~a~e~p~ 410 (578)
T PRK06459 331 MSLSGLLPTIGGVATWMLLESLFMEAYTLPHFIGILPIIAGAMIAMGEGLATGSLIKYISYTQLFRPIKDHASKIKQGPI 410 (578)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCH
T ss_conf 99962998555889999999999705553138999999999999999999999999999710018899756774401558
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780867|r 448 FIFG 451 (478)
Q Consensus 448 ~~~~ 451 (478)
T Consensus 411 ~~~~ 414 (578)
T PRK06459 411 LAVG 414 (578)
T ss_pred HHHH
T ss_conf 9999