HHsearch alignment for GI: 254780867 and conserved domain: PRK06473
>PRK06473 NAD(P)H-quinone oxidoreductase subunit D4; Validated.
Probab=100.00 E-value=0 Score=568.21 Aligned_cols=400 Identities=23% Similarity=0.317 Sum_probs=338.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76410079999999999999999999999632100224206679999999999873146102212457778877776653
Q gi|254780867|r 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM 148 (478)
Q Consensus 69 ~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~ 148 (478)
T Consensus 74 ~l~vDgls~~ll~lt~---~l~~i~i~~~~-~~~~~~~~f~~l~ll~~~~~~g~~~s~dl~~~fvf~E~~~i~sy~LI~~ 149 (500)
T PRK06473 74 HLGVDGLSLPLLVLNS---LLTLIAIYSSD-ESLERPRFYYSLLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAI 149 (500)
T ss_pred EEEHHHHHHHHHHHHH---HHHHHHHHHCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7535888999999999---99999999636-6556412999999999999999999752999999999999999999994
Q ss_pred HHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 20001344555554014620467998898853001000001222211101343100001222211234444432110001
Q gi|254780867|r 149 NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMW 228 (478)
Q Consensus 149 ~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~W 228 (478)
T Consensus 150 ~g~~-~~~~aa~ky~i~~~~gs~~~L~gi~~l~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~l~gf~~K~~~~P~H~W 227 (500)
T PRK06473 150 WGGQ-RRGYAATKFLLYTAISGILVLVSFLGLVWLSGASSFDYEPLLSHT-LPLATQLLLLAPILVGFGIKIPLVPFHTW 227 (500)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 3878-889999989999975268999999999999386508899998726-75248999999999999986213121503
Q ss_pred HHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCC-CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2101221001233332100000232111112440001-122210000012221022220000012445443564211124
Q gi|254780867|r 229 IPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHA 307 (478)
Q Consensus 229 lp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~-~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~ 307 (478)
T Consensus 228 LPdA~~~aPt~vSallsg~l~K~G~y~liR~~~~~~~~~~~~~~~~l~~lg~~t~i~g~~~Al~Q~DlKrllAYSSis~m 307 (500)
T PRK06473 228 LPDAHVEASTPVSVLLAGVLLKLGTYGLLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHM 307 (500)
T ss_pred HCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14142008985047788999988899879866641245799999999999999998999999998036278898569999
Q ss_pred CCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCC---CCCCCHHHHHHHHHHHHCCCC
Q ss_conf 42111111215-77888864300232010011000026787408764550210466---523211478999986530366
Q gi|254780867|r 308 GYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL---SRQDIFLTCALTIFLFSLAGI 383 (478)
Q Consensus 308 G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl---~~~~P~~~~~~~i~~lsl~Gl 383 (478)
T Consensus 308 G~i~lgi~~~~~~g~~ga~~~~i~H~~~k~~LFl~~G~i~~~~g--t~~i~~lgGL~~~~~~mP~~~~~f~i~~la~~G~ 385 (500)
T PRK06473 308 GYILLAAAAATPLSILAAVAQMISHGLISALLFLLVGVVYKKTG--SRDVDVLRGLLNPERGLPITGSLMILGVMASAGI 385 (500)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHCCHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 99999999676567999999999999999999999999998628--8139985894533220839999999999987177
Q ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHH
Q ss_conf 50000675999999999628499999999999999999999999996499877865567---332189999999999999
Q gi|254780867|r 384 PPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVA---KEMRLFIFGSILFVTGYF 460 (478)
Q Consensus 384 Pp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 460 (478)
T Consensus 386 Pp~~GF~~k~li~~g~~~~-~~~~~~~~~~~~~lta~Y~l~~~~~~f~G~~~~~~~~~~~~~~~~~~~~~~L~~~~i~~G 464 (500)
T PRK06473 386 PGMVGFIAEFLVFRGSFPI-FPVQTLLCMIGTGLTAVYFLLLINRVFFGRLTAELSNLPRVLWSERLPALVLAVLIVILG 464 (500)
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 4304099999999999998-599999999999999999999999998089970025689973869999999999999999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99767658999998751
Q gi|254780867|r 461 LIENILNSSIMKIVMSL 477 (478)
Q Consensus 461 ~~~~~~~~~~~~~~~~l 477 (478)
T Consensus 465 i~P~~~l~~~~~aa~~l 481 (500)
T PRK06473 465 IQPSWLVRWSEPTASAL 481 (500)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 76899999999999999