HHsearch alignment for GI: 254780867 and conserved domain: PRK08168
>PRK08168 NADH dehydrogenase subunit L; Provisional.
Probab=100.00 E-value=0 Score=384.58 Aligned_cols=280 Identities=16% Similarity=0.164 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 03167641007999999999999999999999963210022420667999999999987314610221245777887777
Q gi|254780867|r 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYV 144 (478)
Q Consensus 65 ~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~ 144 (478)
T Consensus 59 ~~~~~lrvD~LS~~MllLVs~Ig~vV~~YS~~YM~ge~~-~~RFf~~L~lfl~aml~LVlA~NLl~L~~~WE~~gL~sy~ 137 (514)
T PRK08168 59 ASAPWLEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPG-QARYVRALAGTLASVALLVTSNHLLVLVAAWIGISLALHR 137 (514)
T ss_pred CCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 678504137899999999999999999997997689998-2659999999999999999976499999999999999999
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 66532000134455555401462046799889885300100000122221110134310000122221123444443211
Q gi|254780867|r 145 LIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 (478)
Q Consensus 145 LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fP 224 (478)
T Consensus 138 LI~f~~er~~A~~AA~Kafl~~riGd~~LL~a~~ll~~~~GT~~i~~i~~~~~~~~~~~~l~~a~lLL~laA~~KSAQfP 217 (514)
T PRK08168 138 LLTFYPDRPRARLAAHKKFIASRLAELLLLAAAGLLYLEVGSLSLADILQQVAADGLSLSLQAAALLLALAALLKTAQLP 217 (514)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98324998889999999999999999999999999999969873999999874456765899999999999998851173
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00012101221001233332100000232111112440001122210000012221022220000012445443564211
Q gi|254780867|r 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 (478)
Q Consensus 225 fH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi 304 (478)
T Consensus 218 fH~WLp~AMe-aPTPVSALLHAg~V~AG~~LLiR~~pl~~~-ap~a~~~l~~iG~~Tal~galval~Q~diK~~LAySTv 295 (514)
T PRK08168 218 LHGWLIQVME-APTPVSALLHAGVVNLGGYLLLRFAPLLAL-APPAQWLLVLVGGLTAVLAALVMLTRISIKVRLAWSTC 295 (514)
T ss_pred CCHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7331798865-898099999999999999999998388643-89999999999999999999999988648899999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHC
Q ss_conf 124421111112157788886430023201001100002678740
Q gi|254780867|r 305 GHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKD 349 (478)
Q Consensus 305 ~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~ 349 (478)
T Consensus 296 sQmGfM~l~~GlG~--~~~Al~HlvaHa~fKA~lFL~sGsvv~~~ 338 (514)
T PRK08168 296 AQMGFMLLECGLGL--YELALLHLVAHSLYKAHAFLSAGEAVEDA 338 (514)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999987463--98999999999999999997652489998