HHsearch alignment for GI: 254780867 and conserved domain: PRK08377
>PRK08377 NADH dehydrogenase subunit N; Validated.
Probab=100.00 E-value=0 Score=610.46 Aligned_cols=455 Identities=25% Similarity=0.387 Sum_probs=376.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH--HCCCC---------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999864023015899999999999999999997--13221---------003167641007999999999
Q gi|254780867|r 16 EIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLI--MPYEG---------IGLGGAYISDRFSYFIKAILL 84 (478)
Q Consensus 16 ~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~~~--~~~~~---------~~~~~~~~~D~~s~~~~~l~~ 84 (478)
T Consensus 9 I~lPli~A~l~~ll~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~W~~~~gi~~~~d~ls~~~~ll~~ 88 (493)
T PRK08377 9 IALPLISAFFVPVLKGIGKSLIMPYLVLITLLQTGIAGWVFYEVYTTGKPIIIMAGGWKPPVGINLYIGHFAALFVLIIA 88 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 99999999999998633068999999999999999999999998158981799831757863707788855489999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 99999999999996321002242066799999999998731461022124577788777766532000134455555401
Q gi|254780867|r 85 MSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFV 164 (478)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~ 164 (478)
T Consensus 89 ~v~~~~~~ys~~~~~--~~~~~~~~~l~ll~~~g~~g~~~s~Dl~~lfvf~E~~~i~sy~Li~~~~~-~~~~~Aa~ky~i 165 (493)
T PRK08377 89 VVSFFTALFSFRAVK--VEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNKT-GEAAEASMKYIV 165 (493)
T ss_pred HHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_conf 999999999998843--68624099999999999999999816999999999999999999998798-899999999999
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 46204679988988530010000012222111013431000012222112344444321100012101221001233332
Q gi|254780867|r 165 LGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL 244 (478)
Q Consensus 165 ~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~sall 244 (478)
T Consensus 166 ~~~~gs~~~L~gi~lly~~~Gt~~~~~l~~~~~~~-~~~~~~~~~~l~~~gf~~K~~~fPfH~WlPday~~apt~vsall 244 (493)
T PRK08377 166 LGGIGSSFFLIGVALIYGATGTLNMAHLAQLAAAI-DPTVAQVGLALIIFGLAVEAELFPLNAWAPDAYQAAPHPITVMF 244 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHH
T ss_conf 99999999999999999980897599999986245-73899999999999999885706107774454446898607888
Q ss_pred CCCEECCCCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHH
Q ss_conf 10000023211111244000112--221000001222102222000001244544356421112442111111215-778
Q gi|254780867|r 245 ATIPKFATTMALCRITSVFWPML--SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGI 321 (478)
Q Consensus 245 s~~~~~~~~~~l~r~~~~~~~~~--~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~-~~~ 321 (478)
T Consensus 245 s~~~~k~g~y~l~R~~~~~~~~~~~~~~~~~l~~l~~~t~~~G~~~Al~Q~dlKrllAYSsIsq~G~i~lgi~~~~~~g~ 324 (493)
T PRK08377 245 SAFVVKAGLYAMARILYLLQKVNGWSSVLKLLIIMATLTVVFAELSALRQKDVKRMIAYSSIGQVGLIALAFSLGTQAGV 324 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 89999999999999999732301269999999999999999999999985055099999899999999999995779899
Q ss_pred HHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88864300232010011000026787408764550210466523211478999986530366500006759999999996
Q gi|254780867|r 322 VAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVK 401 (478)
Q Consensus 322 ~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~ 401 (478)
T Consensus 325 ~~a~~~l~~h~~~k~~lFl~~g~i~~~~g--~~~l~~l~GL~~~~P~~a~~~~i~~lsl~GiPp~~GF~~K~~i~~aa~~ 402 (493)
T PRK08377 325 DAGVFHMLNHAIVKAMMFLAVGYVGITLG--GTEIENFQGLGKRMPLTALALTIGAVATVGVPLFNVFWSKFRIILATLQ 402 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999838--8759996597866289999999999999988776469999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 28499999999999999999999999996499877865567332189999999999999997676589999987519
Q gi|254780867|r 402 REFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478 (478)
Q Consensus 402 ~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 478 (478)
T Consensus 403 ~~~~~~~~~~~i~svis~~Y~lr~i~~~ff~~~~~~~~~~--~~~~~~~~l~~~~i~lGi~P~p~~~~~~~aa~~l~ 477 (493)
T PRK08377 403 AGYTWPAALVLFASVVEAVYYFRLIHTMWFEGEGERIKEG--WIGVFLLLLAALIVVIGVYPTPVWEIVKKAGSDIF 477 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 3969999999999999999999999999428887555400--28999999999999999637989999999999870