HHsearch alignment for GI: 254780867 and conserved domain: PRK08601
>PRK08601 NADH dehydrogenase subunit 5; Validated.
Probab=100.00 E-value=0 Score=370.15 Aligned_cols=301 Identities=17% Similarity=0.171 Sum_probs=252.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 99999999971322100316764100799999999999999999999996321002242066799999999998731461
Q gi|254780867|r 49 LSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDM 128 (478)
Q Consensus 49 l~i~l~~~~~~~~~~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l 128 (478)
T Consensus 44 lp~~v~l~~li~~~~~~~~g~F~lD~LS~lM~llVt~VG~lI~~YS~~YM~GD~~y-~RFFa~L~LF~~aMLlLVLSdNL 122 (506)
T PRK08601 44 LPVLVALIGLIGINGQHVVGPWHLDTLAWLMAFFVLTLGFIIQRFSVRYLLGDRSY-RKYFPLFTFTTGFASLAWLSGDL 122 (506)
T ss_pred HHHHHHHHHHHHCCCCEEEECEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99999999998268864652533769899999999999999999989973899982-36999999999999999995869
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC-CCCCCCC
Q ss_conf 022124577788777766532000134455555401462046799889885300100000122221110134-3100001
Q gi|254780867|r 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGH-RSFVLIV 207 (478)
Q Consensus 129 ~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~-~~~~~~~ 207 (478)
T Consensus 123 llLfvgWE~vgL~SylLIgf~~~~~~a~~AA~kaflv~rvGdv~Lllai~lL~~~~Gt~~~~~il~~~~~~~~~~~~~~~ 202 (506)
T PRK08601 123 RLMALCWGATLIGLTLLIGLNKFWKVPREAAKISGMLFLISWLALLGAIVWLFIATGEWQLTSVLTNENLALLGTWEKTG 202 (506)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999999999999999775877566899999999999799999999999999993862199987000332147336899
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 22221123444443211000121012210012333321000002321111124400011222100000122210222200
Q gi|254780867|r 208 GVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSV 287 (478)
Q Consensus 208 ~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~ 287 (478)
T Consensus 203 i~lLL~~~a~~KsAQ~P~h~WLp~am~-~PTPVSAl~HA~mV~AGv~ll~R~~pl~~~--~~~~~~l~~ig~~T~l~~a~ 279 (506)
T PRK08601 203 INLLLILAVMIPAAQWPFHRWLIESAV-APTPVSAIMHAGIVNAGGVMLTRFSPLFHD--DIAQSILLIFSSISVLIGTG 279 (506)
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999988411753455578766-898099999999999889999998898602--69999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCC
Q ss_conf 00012445443564211124421111112157788886430023201001100002678740876455
Q gi|254780867|r 288 VAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQN 355 (478)
Q Consensus 288 ~al~q~d~KrllAySsi~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~ 355 (478)
T Consensus 280 ~al~q~DiK~~lAyST~sQlG~M~~~~GlG~--~~~A~fHL~~Ha~FKA~LFL~aGSVVh~~~~~~~~ 345 (506)
T PRK08601 280 ISLVQVDYKRQLVGSTMAQMGFMLVQCALGA--YSAAIIHLILHGLFKATLFLQSGSIVKRFNIPKQA 345 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 9998877889999999999999999998071--98999999999999999995377865689999998