HHsearch alignment for GI: 254780867 and conserved domain: PRK08676

>PRK08676 hydrogenase membrane subunit; Validated.
Probab=100.00  E-value=0  Score=565.74  Aligned_cols=429  Identities=21%  Similarity=0.316  Sum_probs=354.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCCHHHHHHHH
Q ss_conf             99999999999999713221003-16764100799999999999999999999996321-------00224206679999
Q gi|254780867|r   44 FPVCLLSIALFFLLIMPYEGIGL-GGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVK-------PFSCFEFPVIMLMA  115 (478)
Q Consensus        44 ~~~~~l~i~l~~~~~~~~~~~~~-~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~-------~~~~~~f~~l~l~~  115 (478)
T Consensus        31 ~~l~~~~~sl~~l~~~~~~~~~~~~~~~~iD~Ls~~~l~l~~~v~~l~~lyS~~Ym~~~~~~~~~~~~~~~~fy~l~~l~  110 (486)
T PRK08676         31 HGLWHLGLSLYVLLVLPLPGYFMESRYLFIDHLGLFVVLIASLIFILAALYARGYVDHLLESGELDPENLKVFYLGFNLL  110 (486)
T ss_pred             HHHHHHHHHHHHHHHCCCCCHHCCCCHHEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999999997356421003572221666169999999999999999988885114102456875466999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC------CCCCH
Q ss_conf             999999873146102212457778877776653200013445555540146204679988988530010------00001
Q gi|254780867|r  116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT------GCTGF  189 (478)
Q Consensus       116 ~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~------gs~~~  189 (478)
T Consensus       111 ~~~m~~~~~s~nl~~fyvf~E~~~i~s~~LI~~~~~-~~~~~Aa~ky~~~~~~~~~~~l~g~~~l~~~~~~~~~~gtl~~  189 (486)
T PRK08676        111 LSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSA-RENIDAALKYIFIASTAMIFAFIGLIFLFELTRQALGTGTLNW  189 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             999999999958999999999999999999975798-9999999999999999999999999999999998725786039


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC--C
Q ss_conf             22221110134310000122221123444443211000121012210012333321000002321111124400011--2
Q gi|254780867|r  190 SQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPM--L  267 (478)
Q Consensus       190 ~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~--~  267 (478)
T Consensus       190 ~~l~~~~~~~-~~~~~~~~~~l~ligf~~K~~~~PfH~WLPdA~~eAPtpvSalLsavl~k~G~y~i~R~~~~~~~~~~~  268 (486)
T PRK08676        190 TELAAHASLL-SPGMLGASFLFIFIGFAAKSGIVPFHTWLPAAYAKAPSAVSAVLSGTVLNIGIYGILRMSALLRQSGAA  268 (486)
T ss_pred             HHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             9999763137-858999999999999999871512156506766789947999999999999999999999986230248


Q ss_pred             CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHH
Q ss_conf             221000001222102222000001244544356421112442111111215-7788886430023201001100002678
Q gi|254780867|r  268 SGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLR  346 (478)
Q Consensus       268 ~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~  346 (478)
T Consensus       269 ~~~~~~l~~lg~~tii~g~~~Al~Q~DlKrlLAYSSIshmG~i~lg~~~gt~~~~~gal~~~i~H~l~k~~LFl~aG~i~  348 (486)
T PRK08676        269 EQVSNVLIVFGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWALFHMLAHSLVKAGLFFSAGILH  348 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999999871167999997999999999999967399999999999999999999999999999


Q ss_pred             HHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             74087645502104665232114789999865303665000067599999999962849999999999999999999999
Q gi|254780867|r  347 RKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVI  426 (478)
Q Consensus       347 ~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~  426 (478)
T Consensus       349 ~~~g--t~~i~~l~GL~~~mP~~a~~~~i~~lsl~GlPP~~gF~sK~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  425 (486)
T PRK08676        349 RQYR--SDRFDRIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGAIS-VWLVLAVLLLLLLAASSFANFL  425 (486)
T ss_pred             HHCC--CCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9749--976998659886638999999999999987767545999999999999876-7999999999999999999999


Q ss_pred             HHHHCCCCCCCC---CC---CCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC
Q ss_conf             999649987786---55---6733218999999999999999-767658999998751
Q gi|254780867|r  427 SIMWFDQSTECV---VV---VAKEMRLFIFGSILFVTGYFLI-ENILNSSIMKIVMSL  477 (478)
Q Consensus       427 ~~~f~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l  477 (478)
T Consensus       426 ~~~~~~~~~~~~~~~~~~~~~p~~m~~p~~iLa~l~l~lGv~~p~~l~~~l~~~~~~l  483 (486)
T PRK08676        426 LKAFTRSTPEEENRDPVPYRTPLSMKVPIVILLALVLALGVYFPPGLADFLDQIVKEL  483 (486)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             9999557788777888877686318999999999999999664467999999999983