HHsearch alignment for GI: 254780867 and conserved domain: TIGR00940

>TIGR00940 2a6301s01 monovalent cation:proton antiporter; InterPro: IPR005663 This family of proteins consists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterised systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter.; GO: 0015077 monovalent inorganic cation transmembrane transporter activity, 0030004 cellular monovalent inorganic cation homeostasis.
Probab=100.00  E-value=0  Score=589.63  Aligned_cols=451  Identities=24%  Similarity=0.345  Sum_probs=381.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------------HHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999998640230158999999999999999999------------9713221003167641007999999999
Q gi|254780867|r   17 IIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFL------------LIMPYEGIGLGGAYISDRFSYFIKAILL   84 (478)
Q Consensus        17 i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~i~l~~~------------~~~~~~~~~~~~~~~~D~~s~~~~~l~~   84 (478)
T Consensus         6 ilp~~~a~~IpIly~~~~rih~gWFvl~~plV~F~y~l~L~p~t~sGgv~h~ti~WvP~lG~NFtly~DGl~lLFslLIt   85 (809)
T TIGR00940         6 ILPLLLALLIPILYKYDKRIHIGWFVLAIPLVLFLYTLSLLPITASGGVVHKTIDWVPELGLNFTLYLDGLALLFSLLIT   85 (809)
T ss_pred             EHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             07899999988744222320246889999999999999765565159602101587766787421344258999999998


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf             99999999999996321002242066799999999998731461022124577788777766532000134455555401
Q gi|254780867|r   85 MSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFV  164 (478)
Q Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~  164 (478)
T Consensus        86 gIG~LVvLYsiyYlskk~e~l~nFy~ylL~FMGaMLGVVLSdNlI~LyvFWELTS~~SfLLIsyW~hr~~s~ygAqksl~  165 (809)
T TIGR00940        86 GIGVLVVLYSIYYLSKKEEKLPNFYVYLLLFMGAMLGVVLSDNLIVLYVFWELTSLASFLLISYWFHREKSRYGAQKSLL  165 (809)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             89999999987775301267616999999995356546787789999999999999999998888746888899875434


Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             46204679988988530010000012222111013431000012222112344444321100012101221001233332
Q gi|254780867|r  165 LGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL  244 (478)
Q Consensus       165 ~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~sall  244 (478)
T Consensus       166 ITvfGGlamlgG~ill~~itgsfsi~~~i~~adai~nsplf~~am~LvllGAfTKSAQFPFhiWLPdAMe-APTPVSAYL  244 (809)
T TIGR00940       166 ITVFGGLAMLGGLILLAVITGSFSIDAVIESADAIRNSPLFLTAMVLVLLGAFTKSAQFPFHIWLPDAME-APTPVSAYL  244 (809)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCC-CCCCHHHHH
T ss_conf             6432368999999988575163239999961135420523899999999987654203875547802116-858402767


Q ss_pred             CCC-EECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCH----
Q ss_conf             100-00023211111244000112221000001222102222000001244544356421112442111--11121----
Q gi|254780867|r  245 ATI-PKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALI--GFSTG----  317 (478)
Q Consensus       245 s~~-~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~~--~l~~~----  317 (478)
T Consensus       245 HSATMVKAGlyL~aR~tPvfag-t~~WfW~v~l~GliTL~wgs~~A~~QqDLKgiLAfSTiS~LGlI~~llglGs~~~Hy  323 (809)
T TIGR00940       245 HSATMVKAGLYLVARLTPVFAG-TEAWFWIVALVGLITLLWGSLSAVKQQDLKGILAFSTISQLGLIMVLLGLGSASLHY  323 (809)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC
T ss_conf             6679999889988876112027-557999999999999999999876676667788898885899999999623032154


Q ss_pred             ----------HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHH
Q ss_conf             ----------5778888643002320100110000267874087645502104665232114789999865303665000
Q gi|254780867|r  318 ----------MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFA  387 (478)
Q Consensus       318 ----------~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~GlPp~~  387 (478)
T Consensus       324 ~~~DSmiK~YA~A~~AAvFHliNHATFKgsLFM~~GiiDHetGT--RDirkLGGL~~iMPitfT~~~i~~aaMAGvPpfN  401 (809)
T TIGR00940       324 DGDDSMIKIYALAAVAAVFHLINHATFKGSLFMAAGIIDHETGT--RDIRKLGGLLAIMPITFTVALIASAAMAGVPPFN  401 (809)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCC--HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             88723899999999999998886578768887551502458886--1576526501044689999999999844775334


Q ss_pred             HHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHH-
Q ss_conf             0675999999999628----------49999999999999999999999999649987-78655673321899999999-
Q gi|254780867|r  388 GFFGKYFLLISAVKRE----------FYVLAIVALLSSVISAYYYLRVISIMWFDQST-ECVVVVAKEMRLFIFGSILF-  455 (478)
Q Consensus       388 GF~sK~~i~~~~~~~~----------~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~-  455 (478)
T Consensus       402 GFLSKEmFf~~~~~a~~~n~f~~~T~GyLFP~~a~vasvFtfvYs~~fi~~~FfG~~Kpe~lp~k~HE~p~~Ml~sp~iL  481 (809)
T TIGR00940       402 GFLSKEMFFAEAITASLVNLFDVETLGYLFPVVAIVASVFTFVYSLKFIFRVFFGRYKPEDLPKKAHEAPILMLLSPAIL  481 (809)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCHHHH
T ss_conf             21127888888888751574220256678779999999999999999998651688560126798887760753068889


Q ss_pred             ---HHHHHHHHHHHHHHHH
Q ss_conf             ---9999999767658999
Q gi|254780867|r  456 ---VTGYFLIENILNSSIM  471 (478)
Q Consensus       456 ---~~~~~~~~~~~~~~~~  471 (478)
T Consensus       482 ~~lv~vfGlfP~~l~~~ii  500 (809)
T TIGR00940       482 ALLVVVFGLFPALLTGSII  500 (809)
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             8888875400245763378