>TIGR01770 NDH_I_N proton-translocating NADH-quinone oxidoreductase, chain N; InterPro: IPR010096 This entry describes the 14th (based on Escherichia coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This entry does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This entry also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.

Probab=100.00 E-value=0 Score=607.26 Aligned_cols=456 Identities=43% Similarity=0.763 Sum_probs=396.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHH---HHHH-HHHH-HHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHH Q ss_conf 9999999999999999998640230158---9999-9999-9999999999971322100-----316764100799999 Q gi|254780867|r 11 RLCIPEIIIAFGILFLLLMGVFSRRKNA---FHLV-VFPV-CLLSIALFFLLIMPYEGIG-----LGGAYISDRFSYFIK 80 (478) Q Consensus 11 ~lllP~i~l~~~~l~~l~~~~~~~~~~~---~~~~-~~~~-~~l~i~l~~~~~~~~~~~~-----~~~~~~~D~~s~~~~ 80 (478) T Consensus 2 ~~~lPE~~l~~~~~~ll~~~~f~~~~~~~~~~~l~~~~~~~v~~~~~~~L~l~~~~~~~~~~~~~f~~~f~~D~~~~~~k 81 (491) T TIGR01770 2 LAILPEIILLLGILILLLFGLFYSRKKRYKFPLLLKNLLYIVLLSLLVILFLTLQYAAYLFIGFSFAGFFIVDNFALLIK 81 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 15538999999999999999882365554307999999999999999999998621431232001343366746899999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 99999999999999999632100224206679999999999873146102212457778877776653200013445555 Q gi|254780867|r 81 AILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAAL 160 (478) Q Consensus 81 ~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ 160 (478) T Consensus 82 ~~~ll~~~~~~~~~~~~~~~~~~~~~EF~~L~l~~~lG~~~~vS~~~Ll~~y~gLEl~SL~~Y~L~~~~r~s~~S~EAgl 161 (491) T TIGR01770 82 LILLLSTLLLFLLALSYLSKEKINKFEFYILLLFALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAALKRKSEFSTEAGL 161 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 99999999999987446775113204789999999999999999999999999999999999999863211121235668 Q ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHH Q ss_conf 540146204679988988530010000012222111013431--------000012222112344444321100012101 Q gi|254780867|r 161 KYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRS--------FVLIVGVVLILVGLFFKMALVPFHMWIPDV 232 (478) Q Consensus 161 ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~--------~~~~~~~~ll~~g~~~K~~~fPfH~Wlp~a 232 (478) T Consensus 162 KYfiLGa~sS~llLfG~sliYg~tG~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~G~~f~~~gl~FKl~avPFH~W~PDV 241 (491) T TIGR01770 162 KYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFLSNLEKNISNILINSSLLLLGIVFILVGLLFKLSAVPFHMWVPDV 241 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99999999999999999999986767779999998521102343031048899999999999999999861333437864 Q ss_pred HHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 2210012333321000002321111124400011-222100000122210222200000124454435642111244211 Q gi|254780867|r 233 YEGSPMFMTAFLATIPKFATTMALCRITSVFWPM-LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYAL 311 (478) Q Consensus 233 ~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~-~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi~q~G~i~ 311 (478) T Consensus 242 YeGaP~~vt~f~s~vpKIa~f~~~~rl~~~~~~~~~~~~~~~~~~~a~~Sm~~G~~~Al~Q~~~KRlLAYSSI~H~Gy~l 321 (491) T TIGR01770 242 YEGAPTSVTAFFSIVPKIAIFAVLLRLFLYILFEFSAVWQIFLLIIAVLSMLIGNFGALAQKKVKRLLAYSSISHVGYIL 321 (491) T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH T ss_conf 13654999999999999999999999998886533468999999999999999999997310403777886799999999 Q ss_pred CCCCCHH-HHHHHHHHHHCCCCCHHCCCCHHHHHHHH------HCCCC--CCCCHHHCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 1111215-77888864300232010011000026787------40876--455021046652321147899998653036 Q gi|254780867|r 312 IGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRR------KDGNN--IQNISDLAGLSRQDIFLTCALTIFLFSLAG 382 (478) Q Consensus 312 ~~l~~~~-~~~~~~~~~~~~~~~~~~~lf~~~~~~~~------~~~~~--~~~i~~l~gl~~~~P~~~~~~~i~~lsl~G 382 (478) T Consensus 322 ~~~~~~~~~g~~a~l~Y~~~Y~~~~~g~F~~l~~L~~~rnv~~~~~~~ry~~~~~~~~gL~~~~p~~A~~~~i~~FSlaG 401 (491) T TIGR01770 322 IGLLAGTLEGIKAVLFYIFIYALMSLGAFGVLLLLRSIRNVYKKKDEERYIEYISDLAGLAKTNPLLAILILIILFSLAG 401 (491) T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99997303148999999999999999999999998314442012776213332899998998829999999999999630 Q ss_pred CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCC--CCCCCCHHHHHHHHHHHH Q ss_conf 6500006759999999996284999999999999999999999999964998---77865--567332189999999999 Q gi|254780867|r 383 IPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQS---TECVV--VVAKEMRLFIFGSILFVT 457 (478) Q Consensus 383 lPp~~GF~sK~~i~~~~~~~~~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~---~~~~~--~~~~~~~~~~~~~~~~~~ 457 (478) T Consensus 402 IPP~aGF~~K~~vf~~~~~~~~~~L~~~~v~~S~~~~fYYlR~~k~myf~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 481 (491) T TIGR01770 402 IPPLAGFFGKFYVFFALLKSGLVLLAVIAVLISVISAFYYLRVVKVMYFDKPEVLERRIIIAPISKAQSLLLSITALFLV 481 (491) T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 23268999999999999967815579999999999999999999999807642120232145554256799999999999 Q ss_pred HHHHHHHHH Q ss_conf 999997676 Q gi|254780867|r 458 GYFLIENIL 466 (478) Q Consensus 458 ~~~~~~~~~ 466 (478) T Consensus 482 ~~gl~P~~~ 490 (491) T TIGR01770 482 FLGLFPSLI 490 (491) T ss_pred HHHHHHHCC T ss_conf 999710114

HHsearch alignment for GI: 254780867 and conserved domain: TIGR01770