HHsearch alignment for GI: 254780867 and conserved domain: TIGR01974
>TIGR01974 NDH_I_L proton-translocating NADH-quinone oxidoreductase, chain L; InterPro: IPR003945 NADH-plastoquinone oxidoreductase chain 5 is part of the NADH-ubiquinone oxidoreductase (complex I), which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane : NADH + ubiquinone = NAD(+) + ubiquinol ; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0042773 ATP synthesis coupled electron transport.
Probab=100.00 E-value=0 Score=624.44 Aligned_cols=447 Identities=20% Similarity=0.307 Sum_probs=369.5
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHH--HHHHHHCCCC---------------HHHHHHHHHHHHHH
Q ss_conf 9999999999999864023015899999999999-9999--9999713221---------------00316764100799
Q gi|254780867|r 16 EIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLL-SIAL--FFLLIMPYEG---------------IGLGGAYISDRFSY 77 (478)
Q Consensus 16 ~i~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l-~i~l--~~~~~~~~~~---------------~~~~~~~~~D~~s~ 77 (478)
T Consensus 7 v~lPLiGfl~aglfg~~~~~~~~~~~~~~~~~~S~~l~~~~f~~~~~~~~~~~~~~~Lf~Wi~~g~l~v~~~~~~D~Ls~ 86 (691)
T TIGR01974 7 VFLPLIGFLIAGLFGRRIGKKASGIIGIGLVGVSAALSAYVFVDFLLNGEGEAFTQSLFPWISVGGLQVNFGLRVDQLSL 86 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCEEEEEEEEHHHHH
T ss_conf 99999999999987556765336899999999999999999998623788734888612224416710433456400688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999999999999999632100224206679999999999873146102212457778877776653200013445
Q gi|254780867|r 78 FIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIE 157 (478)
Q Consensus 78 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l~~~~g~~~~~~s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~ 157 (478)
T Consensus 87 ~Ml~vvTgVs~LvHiYS~gYM~~D~g~-~RFFaYLsLF~fsML~LV~aDNfl~LF~GWEGVGLcSYLLIGFwy~k~sA~~ 165 (691)
T TIGR01974 87 TMLIVVTGVSLLVHIYSIGYMAHDEGR-SRFFAYLSLFTFSMLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANN 165 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 999999999889876400321478888-6047788899999999998756898888678988997874111246742541
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC------------CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55554014620467998898853001000001222211101343------------100001222211234444432110
Q gi|254780867|r 158 AALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR------------SFVLIVGVVLILVGLFFKMALVPF 225 (478)
Q Consensus 158 aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~------------~~~~~~~~~ll~~g~~~K~~~fPf 225 (478)
T Consensus 166 AA~KAFvvNRVGD~g~~lGif~~f~~fGtl~f~~vf~~~~~~~~~G~~~~~~~g~~~~~l~~i~llLf~GAmGKSAQlpL 245 (691)
T TIGR01974 166 AAIKAFVVNRVGDFGLLLGIFLIFAYFGTLNFQEVFALAQNLDLEGATTIEFLGAEFSALTLICLLLFIGAMGKSAQLPL 245 (691)
T ss_pred CCCCCEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02114211037889999999999998776207899988864221157899873132218999999999735577520010
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCEEC-CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0012101221001233332100000-232111112440001122210000012221022220000012445443564211
Q gi|254780867|r 226 HMWIPDVYEGSPMFMTAFLATIPKF-ATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 (478)
Q Consensus 226 H~Wlp~a~~~ap~~~salls~~~~~-~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~g~~~al~q~d~KrllAySsi 304 (478)
T Consensus 246 HtWLpDAMeG-PTPVSALIHAATMVTAGVyLvaR~spLF-~l~p~al~~v~iiGA~TalFaA~~alvQ~DIKRilAYST~ 323 (691)
T TIGR01974 246 HTWLPDAMEG-PTPVSALIHAATMVTAGVYLVARTSPLF-ELSPTALYLVTIIGAITALFAATVALVQNDIKRILAYSTC 323 (691)
T ss_pred HCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0246346798-7820177764477678899999734034-3466788857899999999999999987216674476411
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHCCC--
Q ss_conf 124421111112157788886430023201001100002678740876455021046652321147899998653036--
Q gi|254780867|r 305 GHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAG-- 382 (478)
Q Consensus 305 ~q~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~~~~P~~~~~~~i~~lsl~G-- 382 (478)
T Consensus 324 SQLGYMF~A~GvgP~AY~aAiFHL~THAFFKALLFLgaGsVIhAmh-hEqdirkMGgL~K~~P~Ty~~f~iG~lAL~Gli 402 (691)
T TIGR01974 324 SQLGYMFLALGVGPIAYAAAIFHLMTHAFFKALLFLGAGSVIHAMH-HEQDIRKMGGLRKKLPVTYITFLIGSLALIGLI 402 (691)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1888999983576678999999999999999889986567876423-760023513201323899999999999999972
Q ss_pred CC----HHHHHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--------------
Q ss_conf 65----0000675999999999628-----499999999999999999999999996499877865--------------
Q gi|254780867|r 383 IP----PFAGFFGKYFLLISAVKRE-----FYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVV-------------- 439 (478)
Q Consensus 383 lP----p~~GF~sK~~i~~~~~~~~-----~~~~~~~~~~~s~~s~~y~~~~~~~~f~~~~~~~~~-------------- 439 (478)
T Consensus 403 ~Pg~~l~faGFfSKD~Ile~A~~~GG~~~~~~~~~~~gl~~A~~TafYsfRl~f~~FhG~~~~~~~~~~~~d~hg~e~~G 482 (691)
T TIGR01974 403 FPGTVLGFAGFFSKDLILEAAFASGGHSATGSFLFVAGLIGAFLTAFYSFRLIFLVFHGKERWEADSEHHSDKHGEEDHG 482 (691)
T ss_pred HCCHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCCC
T ss_conf 22144431554431489999985368427889999999999999999999988876367312245678889888755688
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----5673-32189999999999999997676
Q gi|254780867|r 440 ----VVAK-EMRLFIFGSILFVTGYFLIENIL 466 (478)
Q Consensus 440 ----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 466 (478)
T Consensus 483 ~g~~~H~HE~~~~m~~PL~~L~~gs~~~G~~~ 514 (691)
T TIGR01974 483 LGKAHHPHESPLVMLLPLIVLAVGSVFAGFLI 514 (691)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98888889873145888999999999989999