HHsearch alignment for GI: 254780867 and conserved domain: pfam00361

>pfam00361 Oxidored_q1 NADH-Ubiquinone/plastoquinone (complex I), various chains. This family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=100.00  E-value=0  Score=452.89  Aligned_cols=268  Identities=34%  Similarity=0.566  Sum_probs=246.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf             14610221245777887777665320001344555554014620467998898853001000001222211101343100
Q gi|254780867|r  125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFV  204 (478)
Q Consensus       125 s~~l~~~~v~~E~~~i~~~~LI~~~~~~~~~~~aa~ky~~~~~~g~~~ll~g~~~~y~~~gs~~~~~l~~~~~~~~~~~~  204 (478)
T Consensus         1 s~dl~~~~v~~El~~l~~y~Li~~~~~~~~~~~Aa~ky~i~~~~~s~~lL~gi~~ly~~~gt~~~~~~~~~~~---~~~~   77 (270)
T pfam00361         1 SNNLLLFYLGWELLGLPSYLLIGFWGYSPRSLEASLKYFLYTALGSLFLLFGILYIYGLTGSLSFTLLFLFGL---NSNG   77 (270)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCC---CCHH
T ss_conf             9749999999999999999998834999999999999999999999999999999999862226999986435---6348


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCC
Q ss_conf             00122221123444443211000121012210012333321000002321111124400011222100000122210222
Q gi|254780867|r  205 LIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVL  284 (478)
Q Consensus       205 ~~~~~~ll~~g~~~K~~~fPfH~Wlp~a~~~ap~~~salls~~~~~~~~~~l~r~~~~~~~~~~~~~~~l~~~g~~t~i~  284 (478)
T Consensus        78 ~~~~~~l~~~g~~~K~~~~PfH~Wlpday~~ap~~~s~~ls~v~~~~g~~~l~r~~~~~~~-~~~~~~~l~~~~~~s~i~  156 (270)
T pfam00361        78 LLLLSLLLLVAFLVKSPQFPFHFWLPDAHEGPPPVSSLILATTLKKAGLYLLLRLSNLFSS-SNLISYILLILGILSMLL  156 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999999486247557788579987899999989999999999999986132-378999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHCCCCCCCCHHHCCCC
Q ss_conf             200000124454435642111244211111121-5778888643002320100110000267874087645502104665
Q gi|254780867|r  285 GSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS  363 (478)
Q Consensus       285 g~~~al~q~d~KrllAySsi~q~G~i~~~l~~~-~~~~~~~~~~~~~~~~~~~~lf~~~~~~~~~~~~~~~~i~~l~gl~  363 (478)
T Consensus       157 g~~~Al~Q~dlKrllAYSSis~~G~il~~~~~~~~~~~~~~~~~~i~h~~~k~~lF~~~g~i~~~~~--~~~i~~l~Gl~  234 (270)
T pfam00361       157 GSLGALNQTDLKKLIAYSSISHMGFVMMGILSLGSYGIIGAIIHLISHGFFSALLFLLAGLIIHRSG--TRDLRNYGGLF  234 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCHHHHHCCHH
T ss_conf             9999983302779999999999999999999865779999999999999999999999999998758--87099870969


Q ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             23211478999986530366500006759999999
Q gi|254780867|r  364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS  398 (478)
Q Consensus       364 ~~~P~~~~~~~i~~lsl~GlPp~~GF~sK~~i~~~  398 (478)
T Consensus       235 ~~~P~~~~~~~i~~lsl~GiPp~~GF~~K~~i~~s  269 (270)
T pfam00361       235 NSMPILALLLLLLLLSLMGLPPLLGFISKFLILES  269 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             88299999999999999877576038899999864