HHsearch alignment for GI: 254780867 and conserved domain: pfam00662

>pfam00662 Oxidored_q1_N NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus. This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.
Probab=90.47  E-value=0.15  Score=25.66  Aligned_cols=50  Identities=12%  Similarity=0.186  Sum_probs=37.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf             100316764100799999999999999999999996321002242066799
Q gi|254780867|r   63 GIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIML  113 (478)
Q Consensus        63 ~~~~~~~~~~D~~s~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~f~~l~l  113 (478)
T Consensus        12 ~~~~~~~~~~D~ls~~ml~vvt~Vs~lIhiyS~~YM~~D~~~-~RFf~yLs   61 (62)
T pfam00662        12 SFNINWGFLFDSLSLIFLSVVLTVSWLVHLYSIWYMSHDPNI-NRFFSYLS   61 (62)
T ss_pred             CEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CHHHHHHC
T ss_conf             894799989811589999999999999999968872179692-16774536