RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N
[Candidatus Liberibacter asiaticus str. psy62]
         (478 letters)



>gnl|CDD|180252 PRK05777, PRK05777, NADH:ubiquinone oxidoreductase subunit N;
           Provisional.
          Length = 476

 Score =  393 bits (1011), Expect = e-110
 Identities = 189/438 (43%), Positives = 279/438 (63%), Gaps = 7/438 (1%)

Query: 9   DLRLCIPEIIIAFGILFLLLMGVFSRRKNAF-HLVVFPVCLLSIALFFLLIMPYEGIGLG 67
           +L L +PE+I+    + LLL+  F RR +    L V  + L  +AL F+L     G   G
Sbjct: 7   NLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFG 66

Query: 68  GAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISAND 127
           G  + D F+ F+K ++L++S++  +   +  Y++     EF +++L A+LGM+ M+SAND
Sbjct: 67  GMLVVDGFALFLKGLILLASLLALL--LARPYLEDRGRGEFYLLVLFALLGMMVMVSAND 124

Query: 128 MISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT 187
           +++ ++ LEL S  LY L A+ R    S+EAA+KYFVLGA +S FLLYG+S +YG TG  
Sbjct: 125 LLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184

Query: 188 GFSQIATSLFIG-HRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLAT 246
            F+ IA +L  G   S +L+ G+V +LVGL FK++ VPFHMW PDVYEG+P  +TAFLAT
Sbjct: 185 SFAGIAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLAT 244

Query: 247 IPKFATTMALCRITSVFWPMLSG-LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIG 305
            PK A    L R+  V +  LS     +   ++I SM++G++ A+ Q ++KRL+AYSSI 
Sbjct: 245 APKIAAFAVLLRLLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIA 304

Query: 306 HAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364
           HAGY L+G + G   G  A++ Y++ YL M +G F  I  LRRK G    +ISD AGLS+
Sbjct: 305 HAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGGEAE-SISDFAGLSK 363

Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424
           +   L   +TIF+ SLAGIPP AGF+GK+++  +AV+   + LA++ +L+S I A+YYLR
Sbjct: 364 RSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423

Query: 425 VISIMWFDQSTECVVVVA 442
           VI +M+FD+      V  
Sbjct: 424 VIKLMYFDEPPRDAPVNW 441


>gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone
           oxidoreductase, chain N.  NADH-plastoquinone
           oxidoreductase is used for the complex and this protein
           is designated as subunit 2 or B. This model also
           includes a subunit of a related complex in the archaeal
           methanogen, Methanosarcina mazei, in which F420H2
           replaces NADH and 2-hydroxyphenazine replaces the
           quinone.
          Length = 468

 Score =  302 bits (776), Expect = 1e-82
 Identities = 185/427 (43%), Positives = 267/427 (62%), Gaps = 8/427 (1%)

Query: 14  IPEIIIAFGILFLLLMGVFSRRKNAFH-LVVFPVCLLSIALFFLLIMPYEG----IGLGG 68
           +PEII+  G   LLL G+F  RK     L+     ++ ++L   L +  +          
Sbjct: 5   LPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFTGFS 64

Query: 69  AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDM 128
            +I D FS  IK ILL+S++++F    S    +  + FEF +++L A+LG+  ++S+ND+
Sbjct: 65  FFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYILLLFALLGIFLLVSSNDL 124

Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTG 188
           +S Y+ LELQS   YVL A+ RKS FS EA LKYF+LGAFSS  LL+GIS IYGFTG   
Sbjct: 125 LSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

Query: 189 FSQIATSLFIGHRSF-VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247
           F  +   L        +L++G+V ILVGL FK++ VPFHMW+PDVYEG+P  +TAF + +
Sbjct: 185 FEDLLLFLSNLGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIV 244

Query: 248 PKFATTMALCRIT-SVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306
           PK A    L R+   + +          +  ++ SM++G+  A+ QK +KRL+AYSSI H
Sbjct: 245 PKIAIFAVLLRLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISH 304

Query: 307 AGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365
            GY LIG   G L GI A++ Y+ IY +M IG F  +  LR +    I+ ISD AGL + 
Sbjct: 305 VGYILIGLLAGTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKT 364

Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425
           +  +   + IF+FSLAGIPP AGFFGK+++  + +K   Y+LA++A+L+SVISA+YYLRV
Sbjct: 365 NPLIAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYLLAVIAILTSVISAFYYLRV 424

Query: 426 ISIMWFD 432
           + +M+FD
Sbjct: 425 VKVMYFD 431


>gnl|CDD|179434 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2;
           Provisional.
          Length = 513

 Score =  259 bits (665), Expect = 9e-70
 Identities = 163/424 (38%), Positives = 244/424 (57%), Gaps = 14/424 (3%)

Query: 14  IPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIM---PYEGIGLGGAY 70
           +PE I+   +L +LL+ +   R  +  L    +  L  AL  L +    P   I   G++
Sbjct: 16  LPEGIVILTLLGVLLVDLIGGRTASRWLPYLAIAGLGAALVALALQWDNPNP-ISFLGSF 74

Query: 71  ISDRFSYFIKAILLMSSIIIFIKMFSCIYVKP--FSCFEFPVIMLMAVLGMLCMISANDM 128
            +D  S   +AI+ +S+++    + S  YV+       EF  I+L A LG + +  A ++
Sbjct: 75  NADNLSIAFRAIIALSTLVTL--LMSWRYVEQSGTPLGEFAAILLTATLGGMFLSGATEL 132

Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT-GCT 187
           +  ++SLE  S A Y+L    ++   S EAALKY ++GA SSA  LYG S +YG + G T
Sbjct: 133 VMIFISLETLSIASYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGST 192

Query: 188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247
             S IA +L I   S  L + +V ++ G+ FK++ VPFH W PDVYEGSP  + AFL+  
Sbjct: 193 QLSAIALAL-ITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVG 251

Query: 248 PKFAT-TMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306
            K A   +A+  + + F         +F  ++I SMVLG+VVA+ Q  +KR++AYSSIG 
Sbjct: 252 SKAAGFALAIRLLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQ 311

Query: 307 AGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365
           AG+ +IG   G   G  +MV Y++ YL M +G F+C++    + G +   ISD AGL ++
Sbjct: 312 AGFVMIGLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTGTD--QISDYAGLYQK 369

Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425
           D  LT  L++ L SL GIPP AGFFGK +L  +  +   Y+L +V L++SVIS YYY+RV
Sbjct: 370 DPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429

Query: 426 ISIM 429
           I +M
Sbjct: 430 IKMM 433


>gnl|CDD|181404 PRK08375, PRK08375, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 487

 Score =  165 bits (420), Expect = 2e-41
 Identities = 112/449 (24%), Positives = 212/449 (47%), Gaps = 23/449 (5%)

Query: 24  LFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYEGI---------GLGGAYISDR 74
             ++L+    R + A  L+V  +           ++    I         G+G    +D 
Sbjct: 18  ALIVLLPKRRRLRWALALLVAALTFALAISLLPQVLDGGVIAYVVGGWPPGIGIELRADS 77

Query: 75  FSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMS 134
            S     +L+ S + I   +++  Y +      F  + L+ + G+L  +   D+ + ++ 
Sbjct: 78  LSALF--LLVTSILAIAALLYAIGYGEHRQTR-FYALFLLLLAGLLGALLTADLFNLFVF 134

Query: 135 LELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT 194
           LE+ S + Y L+AM      ++ AA KY ++G   S FLL G+  +YG TG    + +A 
Sbjct: 135 LEIMSLSSYALVAMGGDRR-ALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAG 193

Query: 195 SLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTM 254
           +L     +  ++     +L+ L  K A+ P H W+P  Y  +P  +TA L+ +       
Sbjct: 194 AL---AENPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVY 250

Query: 255 ALCRIT-SVF---WPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYA 310
           AL RI  +VF   +    GL  +   +++ SM++GS+ A+ Q D+KR++AYS++   GY 
Sbjct: 251 ALIRIYFTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310

Query: 311 LIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFL 369
           L+G +    L + A + +++ + +M    F    ++    G   + +S+L+GL R+    
Sbjct: 311 LLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYG--TRRLSELSGLGRRMPLT 368

Query: 370 TCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIM 429
             A  +   SL G+PP +GF  K++L++ AV+   +++  V L SS+++  Y+LR+    
Sbjct: 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428

Query: 430 WFDQSTECVVVVAKEMRLFIFGSILFVTG 458
           +F           +E  L +    L +  
Sbjct: 429 FFGPPPPGSEAPKQEAPLGMLAPSLALAL 457


>gnl|CDD|181406 PRK08377, PRK08377, NADH dehydrogenase subunit N; Validated.
          Length = 494

 Score =  152 bits (385), Expect = 2e-37
 Identities = 102/360 (28%), Positives = 180/360 (50%), Gaps = 7/360 (1%)

Query: 82  ILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141
           +L+++ +   + +FS   V+     ++ ++ L+ +LG   MI+  D+ + ++ +E+ +  
Sbjct: 84  VLIIAIVSFIMSIFSLKAVEVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAIT 143

Query: 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR 201
            Y L A N K+  + EA++KY VLG   S+F L G++ IYG TG    + IA  L     
Sbjct: 144 AYALTAYN-KTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIA-QLAGTID 201

Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITS 261
             V  VG+ L++ GL  +  L P + W PD Y+ +P  +T   +     A   A+ RI  
Sbjct: 202 PTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY 261

Query: 262 VFWPM--LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-M 318
           +       S +L + + ++  ++    + A+RQK++KR++AYSSIG  G   +  + G  
Sbjct: 262 LMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQ 321

Query: 319 LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLF 378
            G+ A V +M+ + I+    F  +  +    G     I    GL ++      ALTI   
Sbjct: 322 AGVDAGVFHMINHAIVKALLFLAVGYVGITLGGT--EIEKFEGLGKRMPLTALALTIGAL 379

Query: 379 SLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV 438
           S  GIP F  F+ K+ ++++ +   +     + L +SV+ A YY R+I  MWF    E +
Sbjct: 380 STVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFKGEGERI 439


>gnl|CDD|183667 PRK12667, PRK12667, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 520

 Score =  143 bits (364), Expect = 6e-35
 Identities = 127/506 (25%), Positives = 220/506 (43%), Gaps = 55/506 (10%)

Query: 14  IPEIIIAFGILFLLLMGVFSRRKNAFH---LVVFPVCLLSIALFFLLIMPYEGI------ 64
            P +++ F  L  LL  +    +       L+V  + L+   L F+ +            
Sbjct: 9   TPILLVLFAFLLPLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVYSSNKPIVYLFG 68

Query: 65  ----GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVL-GM 119
                +G  Y  D     +   LL + ++  I ++S  Y++  S  E+   +L+ +  GM
Sbjct: 69  GWPAPIGIVYEVDLLGALL--GLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGM 126

Query: 120 LCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISF 179
           L ++   D  + ++ LE+ S + Y L+A  R    ++EAA+KY ++GA  +      ++F
Sbjct: 127 LGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAF 186

Query: 180 IYGFTGC----------TGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229
           +Y   G            G S   T    G+    L V + L L     K A+ P H W+
Sbjct: 187 LYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWL 246

Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRI-------TSVFWPMLSGLLPIFMCVSIGSM 282
           PD +  +P  ++A L+ +       A+ R        +       + L PI + +   S 
Sbjct: 247 PDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSPILIILGAVSA 306

Query: 283 VLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIY------LIMM 335
           ++G+++ + QKD+KRL+AYS+I H GY  +G   G  LG+ A + +++ +      L + 
Sbjct: 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLA 366

Query: 336 IGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFL 395
            G F      R        +I +LAGL R+    + A  I   SL GIPP  GFF K  L
Sbjct: 367 SGVFIHAAGTR--------DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418

Query: 396 LISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE-----MRLFIF 450
             + ++  FY+ A+V L++S IS   Y R    ++F +      V  KE     + + + 
Sbjct: 419 FNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVL 478

Query: 451 GSILFVTGYFL--IENILNSSIMKIV 474
              + + G     +  IL+S I    
Sbjct: 479 ALAVLILGILALFLPEILDSLIEPAA 504


>gnl|CDD|181405 PRK08376, PRK08376, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 521

 Score =  132 bits (335), Expect = 1e-31
 Identities = 121/421 (28%), Positives = 214/421 (50%), Gaps = 31/421 (7%)

Query: 73  DRFSYFIKAILLMSSIIIFIK-MFSCIYVKPFSCFE-FPVIMLMAVLGMLCMISANDMIS 130
           D F  F+    L+++I+ F+  ++S  Y+K  +  + +  ++L+  LGML M    D+ +
Sbjct: 89  DLFGAFM---ALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFN 145

Query: 131 FYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS 190
           F++ LE+ S A Y L+A    +  +IEA +KY  +G+ +S+ +L GI+ +YG  G    +
Sbjct: 146 FFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMA 205

Query: 191 QIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKF 250
            +A  +     + V  + + L + GL  K   VP HMW+PD Y  +P  ++A L  I K 
Sbjct: 206 YLAVKMSEN-PTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI-KQ 263

Query: 251 ATTMALCRIT-SVFWPMLSG-----LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304
           A   AL R+  S++ P ++      ++ I  C+   +M +G  +A+ QKD+KRL+AY S+
Sbjct: 264 AGLYALARVLFSIYGPAINLATVGWVIIILGCL---TMFVGVAMAVVQKDVKRLLAYHSV 320

Query: 305 GHAGYALIGFSTGM--LGIVAMVRY------MVIYLIMMIGFFSCILSLRRK---DGNNI 353
              GY L+G   G+  LG  AM  Y        IY I+    +  +L L           
Sbjct: 321 SQIGYMLLGLGVGLAALGDPAMASYGEIALAGGIYHIVNHALYKALLFLTAGAVIYETGT 380

Query: 354 QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALL 413
           +N+++L GL+R     T A  I   ++ G+PPF GF  K +L+  +      +L ++A++
Sbjct: 381 RNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASK-WLIYESSALFNPILGVIAMI 439

Query: 414 SSVISAYYYLRVISIMWFDQSTECVVVV---AKEMRLFIFGSILFVTGYFLIENILNSSI 470
            SV++   +++V    +F   +E V+ V    K M + +    + + G  L    ++  +
Sbjct: 440 GSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPMLVPMLILAIAIIGMGLFPWQISDKL 499

Query: 471 M 471
           M
Sbjct: 500 M 500


>gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 492

 Score =  132 bits (333), Expect = 2e-31
 Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 17/366 (4%)

Query: 84  LMSSIIIFIKMFSCIYVKPFSCFEFPV--------IMLMAVLGMLCMISANDMISFYMSL 135
            M  ++ FI + S +Y    +  E  V          L+ + G+L ++ +ND+ + Y+ L
Sbjct: 80  TMLVLVNFIAVMSVLYGIYPNRKEISVNKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFL 139

Query: 136 ELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATS 195
           E+ S + YVL+AM R    ++ AA +Y ++G   + F L GI F+Y  TG      +   
Sbjct: 140 EISSISSYVLVAMGRDKK-ALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLI 198

Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLA-TIPKFATTM 254
           +     +  + +GV+ I+VGLF K AL PFH W+   Y  +P F++ F + T  K    +
Sbjct: 199 IQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYL 258

Query: 255 ALCRITSVFWPMLSGLLP----IFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYA 310
            +  +  VF             +FM ++  ++V GSV+AI  KD+KR+ AYSSI H GY 
Sbjct: 259 IIRIVYDVFKANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYI 318

Query: 311 LIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFL 369
           ++  S     G+ A V Y+V + I+    F    S+    G     + D   L +    +
Sbjct: 319 ILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTT--KLEDCLNLWKSMPKI 376

Query: 370 TCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIM 429
           T A  +   SL G+PP +GF  K+++L + +K   ++  +V L+ S +S  Y  +++  +
Sbjct: 377 TLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEAL 436

Query: 430 WFDQST 435
           +F+   
Sbjct: 437 YFESRM 442


>gnl|CDD|181533 PRK08668, PRK08668, NADH dehydrogenase subunit M; Validated.
          Length = 610

 Score =  121 bits (305), Expect = 5e-28
 Identities = 101/363 (27%), Positives = 180/363 (49%), Gaps = 18/363 (4%)

Query: 84  LMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALY 143
           ++S ++IF   F  +  K  +   F +  LM++ G+L +  AND+++ Y+  E+ +F+ +
Sbjct: 76  MISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF 135

Query: 144 VLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIG-HRS 202
           +++ M +K   S +A+LKYFVL A  +  +LY I  IY  TG   F+ I+  L       
Sbjct: 136 MMVPMGKK--ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLINDTSTG 193

Query: 203 FVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL------ATIPKFATTMAL 256
           F LIV + L+  G   K  + P H+W PD Y  +P   +A L           F   + +
Sbjct: 194 FALIVFLFLLAFG-VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYV 252

Query: 257 CRITSVFWPM-----LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYAL 311
              T +F        +     I   +   S+++G+++AI Q+D+K+L+AYSS+ + GY L
Sbjct: 253 LPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312

Query: 312 IGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLT 370
           +G   G  LG    + ++  + +    FF    ++  + G     IS++ GL  +  F  
Sbjct: 313 VGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGT--TKISEMGGLIEKMPFTF 370

Query: 371 CALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMW 430
               + + SLAGIPP +GF  K+ +  + + +   + A +A   S+ S  Y  R ++ ++
Sbjct: 371 AMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVF 430

Query: 431 FDQ 433
             Q
Sbjct: 431 LGQ 433


>gnl|CDD|183663 PRK12663, PRK12663, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 497

 Score =  115 bits (291), Expect = 2e-26
 Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 7/331 (2%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
            P I+L+ + G++      D+ + Y+  E+   A +VLI +  +    +  A+KY VL  
Sbjct: 111 PPFILLL-MAGVIGSFLTGDLFNLYVWFEVMLIASFVLITLG-QEREQLRGAIKYVVLNL 168

Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
             S   L GI  +YG  G    + IA  L     +  L    +L L+    K AL PF M
Sbjct: 169 IGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFPF-M 227

Query: 228 WIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGS 286
           W+P  Y      + A  A +       AL R+ ++ +P    LL P+   ++  +MV+G+
Sbjct: 228 WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGA 287

Query: 287 VVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSL 345
           + A+  KD++R+  Y  I   G+ L+G + G   GI   + Y+V  +++    F    SL
Sbjct: 288 LGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSL 347

Query: 346 RRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFY 405
            R  G   +++  L GL R++        I +F++ G+PPF+GF+GK  L+  A+    Y
Sbjct: 348 VRLTGY--RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAY 405

Query: 406 VLAIVALLSSVISAYYYLRVISIMWFDQSTE 436
           +L  + L++S+I+ Y   R+  + ++     
Sbjct: 406 ILLALMLITSLITMYSLFRIFFLAYWGDKDG 436


>gnl|CDD|180504 PRK06277, PRK06277, hydrogenase subunit F; Validated.
          Length = 478

 Score =  100 bits (251), Expect = 9e-22
 Identities = 108/413 (26%), Positives = 194/413 (46%), Gaps = 21/413 (5%)

Query: 17  IIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYE---GIGLGGAY--- 70
           +++ F ++  ++  +   +      + F V +L   L FL    Y    G GL   Y   
Sbjct: 6   LMVVFPMICAIIFNLLHGKDKLIKYLTFIVAILLPILPFLASYGYYYFGGHGLVNGYHSG 65

Query: 71  ISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMIS 130
           I+  F+   + I+ + S+I  + + + +  K  S   +  +MLM +  +  ++ A+D+ +
Sbjct: 66  ITYLFNPAKQIIIFVLSLIASLVLITGLGEKKSSGL-YVFLMLMGLASVSAIVLADDIFN 124

Query: 131 FYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS 190
            Y+  E+ +     L+  +     + +AALKY +LG  + + LL GI F+   TG    +
Sbjct: 125 LYVFFEIAAIVQVGLVIASGTE-EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNIT 183

Query: 191 QIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKF 250
            I  +L +   S V+  G++L++ GL +   L PFH    D+Y  +  F +A L T  KF
Sbjct: 184 DIHNALLVNPTSPVIYGGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKF 243

Query: 251 ATTMALCRITSVF--WPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG 308
                +  I  +F           + + +S+ +MV G V+A+ Q D KRL+AY +I   G
Sbjct: 244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGG 303

Query: 309 YALIGFSTGM-LGIVA----MVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363
           Y   G + G  LGIVA     + +++    + +G    I+S R K      N+  L GL 
Sbjct: 304 YVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAG--IVSYRTKTS----NLRKLGGLL 357

Query: 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSV 416
                +   +     +++G+PPF GF  K  L  +A++     LAI+ ++ S+
Sbjct: 358 PVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSI 410


>gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone
           oxidoreductase, chain M.  This model describes the 13th
           (based on E. coli) structural gene, M, of bacterial NADH
           dehydrogenase I, as well as chain 4 of the corresponding
           mitochondrial complex I and of the chloroplast NAD(P)H
           dehydrogenase complex.
          Length = 479

 Score =  100 bits (251), Expect = 1e-21
 Identities = 88/358 (24%), Positives = 170/358 (47%), Gaps = 19/358 (5%)

Query: 81  AILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSF 140
            ++L+++++  + + +          EF  + L+   G++ + +A D++ FY+  E    
Sbjct: 80  PLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEAGVIGVFAALDLLLFYVFWEAMLI 139

Query: 141 ALYVLIAM----NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQ-IATS 195
            +Y+LI +    NR     I AA+K+F+     S  +L  I  +Y   G     + I   
Sbjct: 140 PMYLLIGVWGGPNR-----IYAAMKFFLYTLAGSLLMLLAILGLYFLGGTFDLLELINLP 194

Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMA 255
           L    ++++ +       +    K+ L P H W+PD +  +P   +  LA +     T  
Sbjct: 195 LPFSVQTWLFLA----FFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYG 250

Query: 256 LCRITSVFWPMLSG-LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIG- 313
             R     +P  S    P+   +++ +++ G+++A+ Q D+KRL+AYSSI H G+ L+G 
Sbjct: 251 FLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 310

Query: 314 FSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCAL 373
           FS   LGI   V  M+ + ++    F  +  L  +     ++I+   GL+ +   L    
Sbjct: 311 FSFNELGISGAVFQMISHGLITAALFLLVGVLYDRAHT--RDIAKYGGLANKMPVLAAFF 368

Query: 374 TIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWF 431
            +F  +  G+P  +GF G+ FL++    +   V+A +A L  V++A Y L +   ++F
Sbjct: 369 MLFAMASLGLPGTSGFVGE-FLILLGAFKVNPVVAFLAALGIVLTAAYMLWLYKRVFF 425


>gnl|CDD|183665 PRK12665, PRK12665, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 521

 Score = 97.0 bits (242), Expect = 9e-21
 Identities = 85/319 (26%), Positives = 155/319 (48%), Gaps = 7/319 (2%)

Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAF 172
           L+ V G+     A D+ + Y+  E+   A YVL+ +   +   + A + Y ++   SS  
Sbjct: 118 LILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLL 176

Query: 173 LLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDV 232
            L GI+ +Y  TG    + +A  L          +  VL LV    K A+ P   W+PD 
Sbjct: 177 FLIGIALVYAATGTLNMADLAVRLDELPSGTRTALFAVL-LVAFGIKAAVFPLSFWLPDS 235

Query: 233 YEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292
           Y  +P  +TA  A +       A+ R  ++ +P   GL  + M V++ +MV+G + AI Q
Sbjct: 236 YPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPG-GGLDTLLMVVALLTMVVGILGAIAQ 294

Query: 293 KDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGN 351
            D+KRL++++ + H GY + G +   + G+   + Y+  ++ +    F  +  + R+ G+
Sbjct: 295 SDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGS 354

Query: 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVA 411
           +  ++  L GL++    L     +   +L GIPPF+GF GK  LL +  + +   LA   
Sbjct: 355 S--SLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAE-DGTWLAWAL 411

Query: 412 LLSSVISAYYYLRVISIMW 430
           +   V+++   L  ++ +W
Sbjct: 412 VAGGVVTSLLTLYAVARVW 430


>gnl|CDD|183650 PRK12650, PRK12650, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 962

 Score = 93.6 bits (233), Expect = 1e-19
 Identities = 93/341 (27%), Positives = 161/341 (47%), Gaps = 23/341 (6%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
           F ++M   +  ML ++ A+D++  +++ EL S A + LIA +         +++  +L  
Sbjct: 112 FYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSGSG--GEAGSIRTLILTF 169

Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
           F    LL  ++     TG T  S I  S     +  +  V  VLI V  F K A  PFH 
Sbjct: 170 FGGLTLLAAVAIAATQTGTTSLSGILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHF 229

Query: 228 WIPDVYEG-SPMFMTAFL--ATIPKFATTMALCRITSVFW--PMLSGLLPIFMCVSIGSM 282
           W+P+     +P  ++AFL  A + K A    L R + VF    + + LL I   V + + 
Sbjct: 230 WLPEAMAAITP--VSAFLHAAAVVK-AGIYLLLRFSPVFHDVAVWNWLLII---VGMITA 283

Query: 283 VLGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGMLGIVAMVRYMVIYLIMMIGFFS 340
           ++G+V A+++ DLK+L AYS++   G+  A IG  T    + A V + + + +     F 
Sbjct: 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTP-FALTAAVVHTLAHALFKSSLFM 342

Query: 341 CILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAV 400
            I  +  + G   ++I  L  L R+  F   ++TI   S+A +PP  GF  K  +L + +
Sbjct: 343 LIGVVDHQAGT--RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFL 400

Query: 401 KREF-----YVLAIVALLSSVISAYYYLRVISIMWFDQSTE 436
           +         +L + A L +V +  Y  R++   + D   +
Sbjct: 401 EAPGGNAGVVLLLVGAALGAVFTFAYSARLVLGAFVDGPRD 441


>gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 761

 Score = 88.8 bits (221), Expect = 3e-18
 Identities = 90/330 (27%), Positives = 165/330 (50%), Gaps = 40/330 (12%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
           F   +L+ +  ML ++ ++++I+ ++  EL S   ++LI  N +   +  AAL+  ++  
Sbjct: 97  FYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTG 156

Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATS--LFIGHRSFVLIVGVVLILVGLFFKMALVPF 225
                LL G+  +   TG    S++  S  +   H  ++ I+  +L+L G F K A  PF
Sbjct: 157 GGGLALLAGLILLGNVTGTYSLSELLASGDVIREHPLYLAIL--LLVLGGAFTKSAQFPF 214

Query: 226 HMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSG------LLPIFMCV 277
           H W+P+  E +P  ++A+L  AT+ K A    L R+     P+L G      +LP+F  +
Sbjct: 215 HFWLPNAME-APTPVSAYLHSATMVK-AGIYLLARLN----PVLGGTPLWQTILPLFGGL 268

Query: 278 SIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG--YALIGFSTGMLGIVAMVRYMVIY---- 331
           +   M+ G+++A+RQ DLK ++AYS++   G    L+G  +  L I A V ++V +    
Sbjct: 269 T---MLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSE-LAIKAAVLFLVAHSLYK 324

Query: 332 --LIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGF 389
             L M+ G       +  + G   ++I+ L GL R       A  +   S+AG+PP  GF
Sbjct: 325 GALFMVAG------IIDHETGT--RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGF 376

Query: 390 FGKYFLLISAVKREFY--VLAIVALLSSVI 417
             K  +  + ++   +  +L + A+L + +
Sbjct: 377 LAKELIYEALLEAPLWSLILTVAAVLGNAL 406


>gnl|CDD|180900 PRK07234, PRK07234, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 470

 Score = 87.3 bits (217), Expect = 7e-18
 Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 32/302 (10%)

Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184
             D+IS Y++LE+ S A ++L+A  R    +I   L+Y      +  F L G   +Y   
Sbjct: 113 CADLISLYVALEVLSIATFLLVAYPRTDR-AIWVGLRYLFYSNVAMLFYLIGAVLVYQAN 171

Query: 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL 244
           G   FS +AT+               LI +GL  K  +    +W+P  +  +   ++A L
Sbjct: 172 GTFAFSGLATA-----DPEAF----ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALL 222

Query: 245 ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304
           + +   A    L R        + GL  I     +G+ +LG + A+ +KDLKR++A+S+I
Sbjct: 223 SGVVVKAGVFPLVRCA----LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTI 278

Query: 305 GHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364
              G+ L     G L       Y + + ++    F C  +L  +  N  + IS + G+ +
Sbjct: 279 SQLGFILAAPLVGGL-------YALAHGLVKSTLFLCAGALPSR--NFTELISQMLGIGK 329

Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424
                   LT+  FS+AG P  AGF  K   L + +       AI   L++V +A  + +
Sbjct: 330 W-----IPLTMASFSIAGFPLLAGFVSKVLTLKNLLP----WQAIALNLAAVGTAASFWK 380

Query: 425 VI 426
            I
Sbjct: 381 FI 382


>gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 496

 Score = 86.5 bits (215), Expect = 1e-17
 Identities = 70/304 (23%), Positives = 147/304 (48%), Gaps = 9/304 (2%)

Query: 127 DMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186
           D+ + ++  E+   A YVLI +    +  +  ++KY ++   SSAF +  ++ +Y   G 
Sbjct: 129 DIFNLFVFFEVMLMASYVLIVIGGTKI-QLRESIKYVLINVVSSAFFVVAVAILYSVVGT 187

Query: 187 TGFSQIA---TSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAF 243
              + I+     L  G    + +V ++ + V    K  L P + W+P  Y   P+ + A 
Sbjct: 188 LNMADISVKIAELSAGQTGLITVVAILFLFV-FATKAGLFPLYFWLPGSYYAPPIAIAAL 246

Query: 244 LATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302
              +       A+ R  ++F+   +     + + +++ +++ G + A+   D+K+++ Y+
Sbjct: 247 FGALLTKVGVYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYN 306

Query: 303 SIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAG 361
            +   G  L+G +     G++  + Y++  +I+    F  I  + +  G    ++  + G
Sbjct: 307 IMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTT--DLKKMGG 364

Query: 362 LSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYY 421
           L ++   L     I   SLAGIPP +GF+GK+F++    +  FYV  I+ LLSS++  Y 
Sbjct: 365 LIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYS 424

Query: 422 YLRV 425
            +++
Sbjct: 425 VIKI 428


>gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 800

 Score = 84.8 bits (210), Expect = 4e-17
 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 35/347 (10%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
           F   + + +  M+ ++ +++ I  Y+  EL S + ++LI+    +  S   A++ F++  
Sbjct: 112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITV 171

Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
           F    LL G   +Y  TG    ++I           + I  + + L+G F K A  PFH+
Sbjct: 172 FGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHI 231

Query: 228 WIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285
           W+P     +P  ++A+L  AT+ K A    L R T +   + +  + I   V + +M+ G
Sbjct: 232 WLPRAMA-APTPVSAYLHSATMVK-AGIFLLFRFTPLL-GLSNMYIYIVTFVGLITMLFG 288

Query: 286 SVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTG--------MLGIVAMVRYMVIYLIMM 335
           S+ A++Q DLK ++AYS+I   G   A++G   G        +  I   V +  ++ +M 
Sbjct: 289 SITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFAALFHLMN 348

Query: 336 IGFFSCILSLRRKDGNNI-------QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAG 388
              F C L +    G  I       ++I  L+G+ +    +   +TI   S+AG+P   G
Sbjct: 349 HAIFKCALFM----GVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNG 404

Query: 389 FFGKYFL---LISAVKREFY------VLAIVALLSSVISAYYYLRVI 426
           F  K      L    +   +      ++  + +++S+ +  Y L ++
Sbjct: 405 FLSKEMFLDALTQTGQLSQFSLISMIIIVFIGVIASIFTFTYALYMV 451


>gnl|CDD|180285 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M;
           Reviewed.
          Length = 497

 Score = 84.5 bits (210), Expect = 5e-17
 Identities = 80/324 (24%), Positives = 146/324 (45%), Gaps = 21/324 (6%)

Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM----NRKSVFSIEAALKYFVLGAF 168
           L    G++ + +A D++ FY+  E     +Y LI +    NR     I AA K+F+    
Sbjct: 118 LWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNR-----IYAATKFFLYTLL 172

Query: 169 SSAFLLYGISFIYGF----TGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224
            S  +L  I ++       TG    + +          + L +      +    KM + P
Sbjct: 173 GSLLMLVAIIYLVVVYYNATGTFDIADLLNLPLPPGVQYWLFLA---FFIAFAVKMPMFP 229

Query: 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSG-LLPIFMCVSIGSMV 283
            H W+PD +  +P   +  LA I        L R +   +P  S    PI + + + +++
Sbjct: 230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAII 289

Query: 284 LGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCI 342
            G++VA+ Q D+K+L+AYSSI H G+  +G   G  LGI   +  M+ + +     F  +
Sbjct: 290 YGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLV 349

Query: 343 LSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKR 402
             L  +     ++I+D  GL++    L      F  +  G+P  +GF G++ +L+ + + 
Sbjct: 350 GVLYDRLHT--RDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQV 407

Query: 403 EFYVLAIVALLSSVISAYYYLRVI 426
              V+A +A    +++A Y L + 
Sbjct: 408 NP-VIAFIATTGLILAAVYSLWLY 430


>gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated.
          Length = 490

 Score = 84.6 bits (210), Expect = 6e-17
 Identities = 75/311 (24%), Positives = 150/311 (48%), Gaps = 13/311 (4%)

Query: 118 GMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGI 177
            ML  +++N++   ++++E  + +  +L+ + R    S+EAA KY ++ +   AF L+G 
Sbjct: 120 TMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRA-SLEAAWKYIIICSVGVAFALFGT 178

Query: 178 SFIY----GFTGCTGFSQIATSLFIGHRSF---VLIVGVVLILVGLFFKMALVPFHMWIP 230
             +Y       G    + + T L          ++ +  V +L+G   K+ L P H W+P
Sbjct: 179 ILVYANAATVMGDGEMAILWTELLKHASLLDPTLMKLAFVFLLIGFGTKVGLFPMHAWLP 238

Query: 231 DVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP--IFMCVSIGSMVLGSVV 288
           D +  +P  ++A L+ +       A+ R   +    +    P  + +   + S+++ +  
Sbjct: 239 DAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIFGLLSVLVAAFF 298

Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRR 347
            +RQ+D+KRL AYSSI H G        G  LGI A + +M+ + +     F    ++ +
Sbjct: 299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQ 358

Query: 348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVL 407
           K G   ++I+ + GL +        L +   ++AG+PPF  F  ++ +L + + R   ++
Sbjct: 359 KYGT--RDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLI 416

Query: 408 AIVALLSSVIS 418
           AI+ LL   ++
Sbjct: 417 AILLLLLLTLA 427


>gnl|CDD|162123 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter.  This
           family of proteins constists of bacterial multicomponent
           K+:H+ and Na+:H+ antiporters. The best characterized
           systems are the PhaABCDEFG system of Rhizobium meliloti
           which functions in pH adaptation and as a K+ efflux
           system and the MnhABCDEFG system of Staphylococcus
           aureus which functions as a Na+:H+ antiporter.
          Length = 793

 Score = 81.4 bits (201), Expect = 5e-16
 Identities = 100/379 (26%), Positives = 166/379 (43%), Gaps = 34/379 (8%)

Query: 83  LLMSSIIIFIKMFSCIYV-KPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141
           LL++ I + + ++S  Y+ K      F   +L  +  ML ++ ++++I  Y+  EL S  
Sbjct: 82  LLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIV 141

Query: 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR 201
            ++LI+       S   A K   +  F    +L G+  +   TG      +  S      
Sbjct: 142 SFLLISYWHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSIDAVIASADAIRN 201

Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRI 259
           S +    +VL+L+G F K A  PFH+W+PD  E +P  ++A+L  AT+ K A    L R 
Sbjct: 202 SPLFGTAMVLVLLGAFTKSAQFPFHIWLPDAME-APTPVSAYLHSATMVK-AGLYLLARF 259

Query: 260 TSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-- 317
           T VF         I     + +++ GS  AI Q+DLK ++A+S+I   G  ++    G  
Sbjct: 260 TPVF-AGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGSP 318

Query: 318 ------------MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL-SR 364
                        L  VA V +++ +       F     +  + G   ++I  L GL   
Sbjct: 319 SYHYQGDDSKIYALAAVAAVFHLINHATFKGSLFMAAGIIDHETGT--RDIRKLGGLFHI 376

Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREF----------YVLAIVALLS 414
             I  T A+ I   ++AG+PPF GF  K      A+              Y+   VA ++
Sbjct: 377 MPITFTLAM-IASAAMAGVPPFNGFLSKEMFFAEAITAHLVNPFDTVTLGYLFPYVATVA 435

Query: 415 SVISAYYYLRVISIMWFDQ 433
           SV +  Y LR I  ++F +
Sbjct: 436 SVFTFVYSLRFIHGVFFGR 454


>gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M;
           Validated.
          Length = 501

 Score = 80.5 bits (199), Expect = 9e-16
 Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 20/323 (6%)

Query: 111 IMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVLGAF 168
           ++L+   G+   + A +++ F++  EL+    Y+LIA+    K  +   A++K+ +  A 
Sbjct: 112 LILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGY---ASIKFLIYTAV 168

Query: 169 SSAFLLYGISFIYGFTGCTGF--SQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFH 226
           S   +L     I   +G T F    I+T     +   +L+ G   +L+G   K+ LVP H
Sbjct: 169 SGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLNTQLILLTG---LLLGFGIKIPLVPLH 225

Query: 227 MWIPDVY-EGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVL 284
            W+PD Y E SP  +   L  +     T  L R     +P    L+ P    +   S++ 
Sbjct: 226 TWLPDAYTEASPA-VAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAPGLAIIGTISVIY 284

Query: 285 GSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCIL 343
           G++ AI QKD+KR++AYSSIGH GY L+  + G  L ++  V  M+ + +++   F  + 
Sbjct: 285 GALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVG 344

Query: 344 SLRRKDGNNIQNISDLAGLSR--QDIFLTCALTIFL-FSLAGIPPFAGFFGKYFLLISAV 400
            + RK G   +++  L GL    + + LT AL +    + AGIP   GF  + F++    
Sbjct: 345 IVERKVGT--RDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAE-FIVFQGS 401

Query: 401 KREFYVLAIVALLSSVISAYYYL 423
              F +  ++ +++S ++A Y++
Sbjct: 402 FSTFPIPTLLCIVASGLTAVYFV 424


>gnl|CDD|181532 PRK08667, PRK08667, hydrogenase membrane subunit; Validated.
          Length = 644

 Score = 79.8 bits (197), Expect = 2e-15
 Identities = 97/416 (23%), Positives = 181/416 (43%), Gaps = 44/416 (10%)

Query: 16  EIIIAFGILFLLLMGVF-----SRRKNAFHLVVFPVCLLSIALFFLLIMPYEGI------ 64
             +    IL LL   V       +RK  +  V++ V  +++ LF   +  + G       
Sbjct: 3   AGLFLGAILLLLAAAVIPLVFRHKRKRVWQSVLWLVIAIALLLFAGSLQLFTGNPLDIPL 62

Query: 65  -----GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFE----FPVIMLMA 115
                GL   +  DR + F   I+L+  + + + ++S  Y +  S  E       +  + 
Sbjct: 63  WGIAPGLDITFHIDRLAAFF--IILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALF 120

Query: 116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLY 175
           +L ML ++++ +  SF    E+ + + + L+  + +   +  A + YFV+   S+ FL+ 
Sbjct: 121 ILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLML 180

Query: 176 GISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEG 235
           GI  ++  TG    S +  S  I    F      +L+ +G   K  ++PFH W+P  +  
Sbjct: 181 GIIVLFIQTGSFELSPLGASAGILSLVF------LLLFLGFGIKAGIIPFHKWLPYAHPA 234

Query: 236 SPMFMTAFLATIPKFATTMALCR-ITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKD 294
           SP  ++A ++ +        L R +  V  P L   + I +  SI S +LG + A+++ D
Sbjct: 235 SPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSI-SALLGVIYALKEHD 293

Query: 295 LKRLMAYSSIGHAGYALIGF------------STGMLGIVAMVRYMVIYLIMMIGFFSCI 342
           LK L+AYSSI + G  L+G             +  +L +   + + + + +     F   
Sbjct: 294 LKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFLTA 353

Query: 343 LSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
            S+    G   +NI  + GL +   + +    +   S+A +PPF GF  +  L  S
Sbjct: 354 GSVVHATGT--RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYES 407


>gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4;
           Validated.
          Length = 500

 Score = 79.4 bits (196), Expect = 2e-15
 Identities = 95/361 (26%), Positives = 180/361 (49%), Gaps = 23/361 (6%)

Query: 82  ILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141
           +L+++S++  I ++S         F + +++L+   G+     A D++ F++  EL+   
Sbjct: 84  LLVLNSLLTLIAIYSSDESIQRPRFYYSLLLLLN-AGVSGAFLAQDLLLFFLFYELELIP 142

Query: 142 LYVLIAM---NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS---QIATS 195
           LY+LIA+    R+      AA K+ +  A S   +L     +   +G + F      + +
Sbjct: 143 LYLLIAIWGGQRRGY----AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHT 198

Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMA 255
           L +  +  +L      ILVG   K+ LVPFH W+PD +  +   ++  LA +     T  
Sbjct: 199 LPLSTQLLLLA----PILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYG 254

Query: 256 LCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGF 314
           L R     +P     L P     ++ S++ G+  AI QKD+K+++AYSSIGH GY L+  
Sbjct: 255 LLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAA 314

Query: 315 STGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL--SRQDIFLTC 371
           +    L I+A V  M+ + ++    F  +  + +K G+  +++  L GL    + + +T 
Sbjct: 315 AAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGS--RDVDVLRGLLNPERGLPITG 372

Query: 372 ALTIF-LFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMW 430
           +L I  + + AGIP   GF  + FL+       F V  ++ ++ + ++A Y+L +++ ++
Sbjct: 373 SLMILGVMASAGIPGMVGFIAE-FLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVF 431

Query: 431 F 431
           F
Sbjct: 432 F 432


>gnl|CDD|181537 PRK08676, PRK08676, hydrogenase membrane subunit; Validated.
          Length = 485

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 100/434 (23%), Positives = 194/434 (44%), Gaps = 38/434 (8%)

Query: 22  GILFLLLMGVFSRRKNAFHL--VVFPVCLLSIALFFLLIMPYEGIGLGGAYIS-DRFSYF 78
             L  L +G+ SR     +   +   +  L ++L+ LL++P  G  +   Y+  D    F
Sbjct: 8   VALLFLRLGLLSRSHRLLNALALGHGLWHLGLSLWVLLVLPLPGYFMESRYLFIDHLGIF 67

Query: 79  IKAILLMSSIIIFIKMFSCIYV-----------KPFSCFEFPVIMLMAVLGMLCMISAND 127
           +  +L+ S + I   +++  YV           +    F     +L++V+       +++
Sbjct: 68  V--VLIASVVFILAALYARGYVDHLLSNGELDPENLKVFYLGFNLLLSVITF--AFFSDN 123

Query: 128 MISFYMSLELQSFALYVLIA-MNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT-G 185
           +  F++  EL +    +LIA ++ +   +I+AALKY  + + +  F   G+ F++  T  
Sbjct: 124 LALFWIFAELTTVFSAMLIAILSARE--NIDAALKYIFIASTAMIFAFIGLIFLFSLTRQ 181

Query: 186 CTGFSQIATSLFIGHRSF----VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMT 241
             G   +  +    H S     VL    + I +G   K  LVPFH W+P  Y  +P  ++
Sbjct: 182 ALGTGTLNWTELAAHASLLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVS 241

Query: 242 AFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVA----IRQKDLKR 297
           A L+          + R++++     SG    F  V IG  +    VA    + Q++LK+
Sbjct: 242 ALLSGTVLNIGIYGILRLSALL--RQSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKK 299

Query: 298 LMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNI 356
           L+A+SSI H G  L+G   G  L +  M+ +M+ + ++  G F     L R+  ++  + 
Sbjct: 300 LIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFD- 358

Query: 357 SDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVAL---L 413
             +  + R        + +   ++ G+PPF  F  K+F+L+       +++  V L   L
Sbjct: 359 -RIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLL 417

Query: 414 SSVISAYYYLRVIS 427
           ++   A + L+  +
Sbjct: 418 AASSFAIFLLKAFT 431


>gnl|CDD|180634 PRK06591, PRK06591, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 432

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 78/337 (23%), Positives = 143/337 (42%), Gaps = 33/337 (9%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIA--MNRKSVFSIEAALKYFVL 165
           F  I+L A  G L MI+ ND  + Y+ +E+ + + YVLIA   N KS+     A  Y ++
Sbjct: 117 FYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLI---GAFDYLIM 173

Query: 166 GAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPF 225
           G+  +  +L  I F+   TG    + IA  L     S ++ + +   L+G   K A  P 
Sbjct: 174 GSIGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNSRIITIAIGFFLIGAILKTAFFPM 233

Query: 226 HMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVS------- 278
           H W+   Y  +   +  +LA I    +T+    I   F  ++ G   I   ++       
Sbjct: 234 HFWMMRAYNNTASVILVYLAGI----STIIGIYIIYKFTYIIIGYETIKTAITNFIRPIA 289

Query: 279 IGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGF 338
           + ++++    A + K+ K ++ YS     GY  + + T   GI+ +   ++   I  I  
Sbjct: 290 LATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTEN-GIIILPSLLLADSINKIAL 348

Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
           F                + D    S +       + I +    G+P    FF K  +L  
Sbjct: 349 F----------------LIDAYNESYKREPNKVLIIIAIICSCGLPISPLFFIKVNILEL 392

Query: 399 AVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQST 435
            + +   +  I+ LLSSV S +Y+ +++ +++  +  
Sbjct: 393 LLTQNLLLDFIIILLSSVGSLFYHYKMVLLLFPTKQE 429


>gnl|CDD|130019 TIGR00944, 2a6301s04, Multicomponent K+:H+antiporter. 
          Length = 463

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 69/348 (19%), Positives = 145/348 (41%), Gaps = 7/348 (2%)

Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAF 172
              + G+       D+ + ++  E+   A Y L+      +  ++  LKY  +   SSA 
Sbjct: 112 QFLLAGLNGAFLTGDLFNLFVFFEMMLAASYGLLVHGSTKI-QLKEGLKYIAVNLVSSAL 170

Query: 173 LLYGISFIYGFTGCTGFSQIATSLFI---GHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229
            + G+S +YG  G    + ++T L       R  V +   +L +V L  K  + P   W+
Sbjct: 171 FVIGVSLLYGVAGTLNMADLSTKLAALEPRSRGLVEMGSALLGVVFLV-KAGMFPLSFWL 229

Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMC-VSIGSMVLGSVV 288
           P  Y   P  + A    +       A+ R+  + +   +G    ++  +++ +++ G + 
Sbjct: 230 PTAYYAPPPPIAAVFGALLTKVGIYAIIRLHLLVFGTAAGFGHEWLVTLAMLTIIFGGIG 289

Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRK 348
            +  +++ ++  Y+ +   G  L G + G  G++A   Y +++ ++  G    ++ L  +
Sbjct: 290 VLAYQNMGKIAGYNVLVAVGVILAGVALGTDGMLAGAIYYLVHDMLTKGALFLLIGLVIR 349

Query: 349 DGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLA 408
            G     +    GL ++   L     I   SLAGIPP +GF GK+ ++        +   
Sbjct: 350 -GTGTATLEAYGGLIKRYPVLGWCFFICALSLAGIPPLSGFIGKFAIISGLFDMGDWTYV 408

Query: 409 IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFV 456
            + LLSS+   Y   R+    ++        V   E++  +  +   +
Sbjct: 409 TLLLLSSLAVLYSVNRIFIRTFWGSIKTIPRVNVIEIKPLVVLAGACI 456


>gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
           oxidoreductase, chain L.  This model describes the 12th
           (based on E. coli) structural gene, L, of bacterial NADH
           dehydrogenase I, as well as chain 5 of the corresponding
           mitochondrial complex I and subunit 5 (or F) of the
           chloroplast NAD(P)H-plastoquinone dehydrogenase complex.
          Length = 617

 Score = 74.6 bits (184), Expect = 6e-14
 Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 30/326 (9%)

Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
           ML ++ A++ +  +   E      Y+LI    K   +  AA+K FV+       LL GI 
Sbjct: 127 MLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIF 186

Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238
            I+ + G   F ++  +L  G     L +  +L+ +G   K A +P H W+PD  EG   
Sbjct: 187 LIFWYFGTLNFQEV-FALAPGADFSALTLICLLLFIGAMGKSAQLPLHTWLPDAMEGP-- 243

Query: 239 FMTAFLATIPKFATTMA------LCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292
             T   A I   A TM       + R TS  + +    L +   +   + +  + VA+ Q
Sbjct: 244 --TPVSALI--HAATMVTAGVYLVAR-TSPLFELSPTALYLVTIIGAITALFAATVALVQ 298

Query: 293 KDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNN 352
            D+KR++AYS+    GY  +    G            I+ +M   FF  +L L    G+ 
Sbjct: 299 NDIKRILAYSTCSQLGYMFLALGVGAYAAA-------IFHLMTHAFFKALLFL--GAGSV 349

Query: 353 I------QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYV 406
           I      Q+I  + GL ++         I   +L G P FAGFF K  +L +A     + 
Sbjct: 350 IHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHS 409

Query: 407 LA-IVALLSSVISAYYYLRVISIMWF 431
              +  L+ + ++A+Y  R+I + + 
Sbjct: 410 FLFVAGLIGAFLTAFYSFRLIFMTFH 435


>gnl|CDD|183645 PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A;
           Reviewed.
          Length = 800

 Score = 74.2 bits (183), Expect = 6e-14
 Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 35/308 (11%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167
           F V +L+ +  ML ++ ++++I  Y+  EL S + ++LI+   +   S   A K  ++  
Sbjct: 112 FYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITV 171

Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227
           F    +L G   +Y  TG     ++  +      S + I  ++LIL+G F K A  PF++
Sbjct: 172 FGGLSMLGGFILLYIMTGSFSIREMIANADEIQNSPLFIPAMILILLGAFTKSAQFPFYI 231

Query: 228 WIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285
           W+PD  E +P  ++A+L  AT+ K A    + R T +F             V + ++  G
Sbjct: 232 WLPDAME-APTPVSAYLHSATMVK-AGIYLVARFTPIF-AGSQVWFWTVTLVGLITLFWG 288

Query: 286 SVVAIRQKDLKRLMAYSSIGHAG--------------YALIGFSTGMLGIVAMVRYMVIY 331
           S+ A++Q DLK ++A+S++   G              Y           I A + +++ +
Sbjct: 289 SLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLHYQGDDSKIYAAAITAAIFHLINH 348

Query: 332 ------LIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR-QDIFLTCALTIFLFSLAGIP 384
                 L M++G        R        +I  L GL     I  T AL I   S+AG+P
Sbjct: 349 ATFKGSLFMIVGIVDHETGTR--------DIRKLGGLMTIMPITFTIAL-IGALSMAGLP 399

Query: 385 PFAGFFGK 392
           PF GF  K
Sbjct: 400 PFNGFLSK 407


>gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 789

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%)

Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
           +L+ +  M+ M+ + + I  ++  EL S   ++LI   R    S+  A K  ++ A    
Sbjct: 117 LLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGL 176

Query: 172 FLLYGISFIYGFTGCTGFSQIATS---LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMW 228
           F+  G   ++  TG    + I      +       + ++ ++LI +G   K A  PF++W
Sbjct: 177 FMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIGAAAKSAQGPFYIW 236

Query: 229 IPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVS---IGSMV 283
           +P+  E +P  ++AFL  AT+ K A    + RI     P+ SG    F+ VS   + +MV
Sbjct: 237 LPNAME-APTPVSAFLHSATMVK-AGVYLVARIH----PIFSGTEAWFILVSGTGMITMV 290

Query: 284 LGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGM---LGIVAMVRYMVIYLIMMIGF 338
           L   +A RQ D+K ++AYS+I    Y   + G++T     LG+ A       +L+    F
Sbjct: 291 LAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHEPGLGVAA----ATFHLLNHATF 346

Query: 339 FSCILSLRRKDGNN--IQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLL 396
            +C+  +     +    ++I  L GL ++        +I   ++AGIPP  GF  K    
Sbjct: 347 KACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFY 406

Query: 397 ISAVK 401
            ++V+
Sbjct: 407 ETSVE 411


>gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 965

 Score = 70.3 bits (173), Expect = 9e-13
 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 23/283 (8%)

Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
           M  ++++++++  Y+  EL +   ++LI    +   S  AAL+  ++       +L GI 
Sbjct: 119 MFGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGLAMLVGII 178

Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238
            +    G    S++      G     + V VVLILVG   K A+VPFH W+P     +P 
Sbjct: 179 ILGQAAGTYRLSELLADPPTGP---AVSVAVVLILVGALSKSAIVPFHFWLPGAMA-APT 234

Query: 239 FMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLK 296
            ++A+L  A + K A    + R+   F   +    P  + + + +M+LG   A+RQ DLK
Sbjct: 235 PVSAYLHAAAMVK-AGIYLVARLAPGF-ADVPVWRPTVLVLGLATMLLGGWRALRQHDLK 292

Query: 297 RLMAYSSIGHAGY--ALIGFST--GMLGIVAMVRYMVIY---LIMMIGFFSCILSLRRKD 349
            ++AY ++   G+   L+G  T    L  +AM+    ++   L +++G        R   
Sbjct: 293 LILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTR--- 349

Query: 350 GNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGK 392
                +I  L+GL R+   L     +   S+AG+PP  GF  K
Sbjct: 350 -----DIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387


>gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated.
          Length = 479

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 74/345 (21%), Positives = 150/345 (43%), Gaps = 35/345 (10%)

Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
           +L+ +  M  ++ ++ ++   +  E+     + LI+   +S  ++ +ALK  ++    S 
Sbjct: 119 LLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISY-YQSPKALRSALKALLITHIGSL 177

Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPD 231
            L    + ++  TG    S ++  L    +  V +     IL   + K A +PF+ W+PD
Sbjct: 178 GLYLAAATLFLQTGTFALSALS-GLHGSLKYLVFL----GILFAAWGKSAQLPFYSWLPD 232

Query: 232 VYEGSPMFMTAFL---ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVV 288
             E  P   +A+L   + +       A    +    P + G +   M +    ++ G ++
Sbjct: 233 AMEA-PTPASAYLHAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVT--LLYGFLM 289

Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLI----------MMIGF 338
            + Q+D+KRL+AYS+I   GY   G S  +LG    +   + Y+           ++ G 
Sbjct: 290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGA 349

Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
            S     R            L G+ ++   +     +   ++ G+PPF GFF K+ +  +
Sbjct: 350 LSYSCGTRLLPR--------LRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAA 401

Query: 399 A--VKREFYVL---AIVALLSSVISAYYYLRVISIMWFDQSTECV 438
              +  E+++L    ++ L+ SV S  ++LR    + F + +E V
Sbjct: 402 GFELSVEYWILLPAMVLLLIESVASFAWFLRWFGRVVFGEPSEAV 446


>gnl|CDD|180952 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F;
           Validated.
          Length = 673

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 32/326 (9%)

Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVLGAFSSAFLLYG 176
           ML ++ + +++  Y+  EL     Y+L+    +RK   + +AA K FV+       LL G
Sbjct: 135 MLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKG--AADAAQKAFVVNRVGDFGLLLG 192

Query: 177 ISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFF-----KMALVPFHMWIPD 231
           I  ++  TG   F  IA  L     S  +   + L+L  L F     K A  P H+W+PD
Sbjct: 193 ILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLLCILVFLGPMAKSAQFPLHVWLPD 252

Query: 232 VYEGSPMFMTAFLATIPKFATTMA------LCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285
             EG     T   A I   A TM       + R+  VF      ++ +       +  LG
Sbjct: 253 AMEGP----TPISALI--HAATMVAAGVFLVARMYPVFEQ-FPAVMTVIAWTGAITAFLG 305

Query: 286 SVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG--MLGIVAMVRYMVIYLIMMIGFFSCIL 343
           + +A+ Q D+K+ +AYS+I   GY ++    G    G+  ++ +     ++ +G  S I 
Sbjct: 306 ASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIH 365

Query: 344 SLRRKDGNN---IQNISDLAGLSRQDIFLTCALTIFLFSLA--GIPPFAGFFGKYFLLIS 398
            +    G++    Q++  + GL R+ + +T A+T  +  LA  GIPPFAGF+ K  +L +
Sbjct: 366 GMEEVVGHDPVLAQDMRLMGGL-RKYMPIT-AITFLIGCLAISGIPPFAGFWSKDEILGA 423

Query: 399 AVKREFYVLAIVALLSSVISAYYYLR 424
           A +     L  V  L++ ++A+Y  R
Sbjct: 424 AFEA-NPALWFVGFLTAGMTAFYMFR 448


>gnl|CDD|180632 PRK06589, PRK06589, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 489

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 83/372 (22%), Positives = 167/372 (44%), Gaps = 42/372 (11%)

Query: 116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSS-AFLL 174
           ++G+L  +S+ D+ + ++  EL + +   LI   R ++       KY  +   S+    L
Sbjct: 127 LIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLS-GGYKYLKILMISALLLFL 184

Query: 175 YGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYE 234
             +  IY  TG   F  ++  LF  ++S +L+    L+ +    K A+ P H W+P    
Sbjct: 185 PAVILIYTKTGNLDF--VSGGLFSKNQSIILL----LMFIYGIAKTAIFPVHSWLP---- 234

Query: 235 GSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIF---------------MCVSI 279
                  A +A  P  A   A+  + +  + +   LL IF               + + I
Sbjct: 235 ------AAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPI 288

Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALI-GFSTGMLGIVAMVRYMVIYLIMMIGF 338
            S+   S+ A++  ++K+++AYS+I     AL+  F      + A + ++V +    I  
Sbjct: 289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICL 348

Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398
           F  + S+      +   +  L G S+    ++  ++I   SL GIP F+GF  K+ +L++
Sbjct: 349 FYSMGSIYSLKKED--QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLA 406

Query: 399 AVKREFYVLAIVALL----SSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSIL 454
           A ++    L+I+ +L    SS++SA Y L+++S ++    +E    + K +   +  S++
Sbjct: 407 ASEQNQPWLSIIVMLVVIASSILSALYLLKILSSIYKPSLSE-NSFITKSLPYLMQISVI 465

Query: 455 FVTGYFLIENIL 466
                  +   +
Sbjct: 466 TCCCALTLFYFI 477


>gnl|CDD|180602 PRK06521, PRK06521, hydrogenase 4 subunit B; Validated.
          Length = 667

 Score = 62.2 bits (152), Expect = 3e-10
 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 14/221 (6%)

Query: 105 CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFV 164
            F + +     +  M+ ++ A+D  SF ++ E  S + + L+  N +      A   Y +
Sbjct: 116 GFFYNLF----LASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLL 171

Query: 165 LGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224
           +    +  +L     +   +G   F+ +  +       F   +  +L L G   K  LVP
Sbjct: 172 MAHAGALAILLAFGLLARESGSYDFAAMRAA---HLSPFWASLVFLLALFGFGAKAGLVP 228

Query: 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL----PIFMCVSIG 280
            H+W+P  +  +P  ++A ++        +A+  I  V + +L         + + +   
Sbjct: 229 LHVWLPRAHPAAPSHVSALMS---GVMLKVAIYGILRVVFDLLGAPGWWWGVLVLALGAI 285

Query: 281 SMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI 321
           S VLG + A+ + DLKRL+AYS+I + G   +G    M+ I
Sbjct: 286 SAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFI 326


>gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter
           subunit A; Reviewed.
          Length = 948

 Score = 59.0 bits (144), Expect = 3e-09
 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 14/127 (11%)

Query: 210 VLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPML 267
           VLIL+G F K A  PFH W+P     +P  ++A+L  AT+ K A    L R     WP+L
Sbjct: 211 VLILLGAFTKSAQFPFHFWLPHAM-AAPTPVSAYLHSATMVK-AGVFLLAR----LWPVL 264

Query: 268 SGLLPIFMCVS---IGSMVLGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGMLGIV 322
           +G    F  V    + +++LG+  A+ Q DLK L+AYS+I H G    L+G  +  L  V
Sbjct: 265 AGTEEWFWIVGGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGS-PLAAV 323

Query: 323 AMVRYMV 329
           A + +++
Sbjct: 324 AAIFHII 330


>gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family. 
           This family represents a subfamily of NAD(P)H
           dehydrogenase subunit 5, or ndhF. It is restricted to
           two paralogs in each completed cyanobacterial genome, in
           which several subtypes of ndhF are found. Included in
           this family is NdhF3, shown to play a role in
           high-affinity CO2 uptake in Synechococcus sp. PCC7002.
           In all cases, neighboring genes include a paralog of
           ndhD but do include other NAD(P)H dehydrogenase
           subunits. Instead, genes related to C02 uptake tend to
           be found nearby.
          Length = 606

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 13/315 (4%)

Query: 120 LCMISANDMISF-YMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
           L  +  +D + F Y+ LE+ + + Y+LI         +  A   F+        LL G+ 
Sbjct: 133 LGGLVLSDSLFFSYVLLEILTLSTYLLIGFWFAQPLVVTGARDAFLTKRVGDLILLMGVV 192

Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILV-GLFFKMALVPFHMWIPDVYEGSP 237
            +    G   +  +A      + +      + L L+ G   K A  P H+W+ +  EG P
Sbjct: 193 ALSPLAGSWNYDDLAQWAATANVNPTTATLLGLALIAGPTGKCAQFPLHLWLDEAMEG-P 251

Query: 238 MFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSM--VLGSVVAIRQKDL 295
              +    ++        L ++  V    LS +    + ++IGS+  + GS++AI Q D+
Sbjct: 252 NPASILRNSVVVATGAWVLIKLQPVL--TLSPVALTAL-IAIGSVTAIGGSLIAIAQIDI 308

Query: 296 KRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQN 355
           KR ++YS   + G   I    G   +  ++  ++ + I     F  I S+        Q+
Sbjct: 309 KRALSYSVSAYMGLVFIAVGLGQGDLALLL--LLTHAIAKALLFMSIGSIIWN--TVTQD 364

Query: 356 ISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSS 415
           +++L GL  +      +  +    L  +PP   F+    L         +++ ++ L+ +
Sbjct: 365 LTELGGLWSRRPISGLSFVVGSAGLIAVPPLGSFWAWLKLADGLWATSPWLVGVL-LVVN 423

Query: 416 VISAYYYLRVISIMW 430
           +++A+   RV  +++
Sbjct: 424 LLTAFNLTRVFRLVF 438


>gnl|CDD|179442 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4;
           Provisional.
          Length = 525

 Score = 53.9 bits (130), Expect = 8e-08
 Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 17/217 (7%)

Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVL 165
           F  +ML    G + + +  DM+ F+++ EL+   +Y+L+A+   +K  +   AA K+ + 
Sbjct: 117 FYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQY---AATKFILY 173

Query: 166 GAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSF-----VLIVGVVLILVGLFFKM 220
            A SS F+L     +  +     F   A    +  + F     +L    +LI  G+  K+
Sbjct: 174 TAGSSLFILLAALAMAFYGDTPTFDMTA----LAAKDFGLGFQLLCYAGLLIAYGV--KL 227

Query: 221 ALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSI 279
            +VP H W+PD +  +   +   LA I       AL R+ +   P       P+ + + +
Sbjct: 228 PIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGV 287

Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFST 316
            +++  ++ +  Q++LKR +AYSSI H G+ LIG  +
Sbjct: 288 VNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGS 324


>gnl|CDD|183668 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 581

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 55/310 (17%)

Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184
           A D+++ ++  EL +F    L+        ++ A  +Y ++       LL GI   Y  T
Sbjct: 112 AGDLLTLFVFWELMAFTSTFLVWARGTKA-AVRAGFRYLLVHVLGGVLLLAGILLHYAET 170

Query: 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVY-EGSP---MFM 240
           G   F  IA                 LIL+G     A  P H W+PD Y E +    +F+
Sbjct: 171 GSFAFGAIAGLGGTA---------AWLILIGFGVNAAFPPLHAWLPDAYPEATVTGSVFL 221

Query: 241 TAF------LATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKD 294
           +AF       A    F  T  L  I +             M       V G   A+ + D
Sbjct: 222 SAFTTKTAVYALARAFPGTELLIYIGAA------------MA------VYGVFFALLEND 263

Query: 295 LKRLMAYSSIGHAGYAL----IGFSTGMLGIVAMVRYMVIY---LIMMIGFFSCILSLRR 347
           L+RL++Y  +   GY +    IG +  + G VA     ++Y   L M  G  + +     
Sbjct: 264 LRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLFMSAG--AVLYRTGT 321

Query: 348 KDGNNIQNISDLAGLSRQDIFLTCALTIF-LFSLAGIPPFAGFFGKYFLLISAVKREFYV 406
           +        ++L GL R  + LT    +    S++  P F+GF  K  ++ +A +  +  
Sbjct: 322 EKL------TELGGLYRS-MPLTALFCLVGALSISAFPLFSGFVSKSMIISAAGEDHYVW 374

Query: 407 LAIVALLSSV 416
           + ++ LL+S 
Sbjct: 375 VWLLLLLASA 384


>gnl|CDD|183596 PRK12561, PRK12561, NAD(P)H-quinone oxidoreductase subunit 4;
           Provisional.
          Length = 504

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 25/249 (10%)

Query: 125 ANDMISFYMSLELQSFALYVLIAM----NRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180
           A D++ F++  EL+   +Y+LI++     R       AA K+ +  A +S F+L      
Sbjct: 106 AQDLLLFFLMWELELVPVYLLISIWGGQKRLY-----AATKFILYTALASIFILVA-GLA 159

Query: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVL---ILVGLFFKMALVPFHMWIPDVYEGSP 237
              +G T    +A    +G +S+ L + ++L    L+    K+ + P H W+PD +  + 
Sbjct: 160 LALSGDTFTFDLAE---LGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEAS 216

Query: 238 MFMTAFLATIPKFATTMALCRITSVFWPMLSG----LLPIFMCVSIGSMVLGSVVAIRQK 293
             ++  LA +       AL R       ML        P    + + +++ G++ A  Q 
Sbjct: 217 APVSMILAGVLLKMGGYALIRFNV---QMLPDAHVYFAPALAILGVVNIIYGALNAFAQD 273

Query: 294 DLKRLMAYSSIGHAGYALIGF-STGMLGIVAMVRYMVIY-LIMMIGFFSCILSLRRKDGN 351
           ++KR +AYSS+ H G+ L+G  +   LGI   +  M+ + LI    FF   ++  R    
Sbjct: 274 NVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTL 333

Query: 352 NIQNISDLA 360
           +I N+  LA
Sbjct: 334 SIPNMGGLA 342


>gnl|CDD|180572 PRK06459, PRK06459, hydrogenase 4 subunit B; Validated.
          Length = 585

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 61/322 (18%), Positives = 139/322 (43%), Gaps = 36/322 (11%)

Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
            ++ +LGM  ++++++ + F    E+ +   YV IA+ +K+      A  +   G  S+ 
Sbjct: 78  YILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNK---RPAFVFMAFGELSTV 134

Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM--WI 229
            +L G ++ +  +G T FS + +            V ++L   G   KM ++PF +  W+
Sbjct: 135 LILAGFAWAFIISGTTNFSYLPS-----------PVPLILASFGFIIKMGMMPFLVSEWL 183

Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIF-MCVSIGSMVLGSVV 288
           P  +  +P   +A L+          + ++T +   +  G   +  + +   S++ G++ 
Sbjct: 184 PIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIGYFGLTILAIGAFSILFGALY 243

Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG-----------IVAMVRYMVIYLIMMIG 337
           A   +++K L+A+S+I + G  L+     M+            ++ ++ Y   + +   G
Sbjct: 244 AYVSENVKGLLAFSTIENNGAILVALGLYMVTKQLITSIEHFSLITVILYSFAHSVAKTG 303

Query: 338 FFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLI 397
            F       ++     + I        ++ ++   LT+   SL+G+ P  G    + LL 
Sbjct: 304 LFLSSGLQEKQSITYSKKI--------RNRWIELGLTLLASSLSGLLPNIGGVASWLLLE 355

Query: 398 SAVKREFYVLAIVALLSSVISA 419
           S     + +  ++++L  V  A
Sbjct: 356 SLFMFAYVLHNVISILFIVTGA 377


>gnl|CDD|180633 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
           Reviewed.
          Length = 624

 Score = 47.9 bits (115), Expect = 6e-06
 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 42/289 (14%)

Query: 158 AALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQI--ATSLFIGHRSFVLIVGVVLILVG 215
           AA+K F++       L  GI  ++   G   + ++  A   F G     L +  +L+ +G
Sbjct: 167 AAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFGLGWSALTLICLLLFIG 226

Query: 216 LFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITS-VFWPMLSGLLPIF 274
              K A  P H W+PD  EG     T   A I   A TM    +T+ V+  +++ + P+F
Sbjct: 227 AMGKSAQFPLHTWLPDAMEGP----TPVSALI--HAATM----VTAGVY--LVARMSPLF 274

Query: 275 ----------MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAM 324
                       V   + +  + + + Q D+KR++AYS++   GY  +      LG+ A 
Sbjct: 275 ELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLA-----LGVGAY 329

Query: 325 VRYMVIYLIMMIGFFSCILSLRRKDGNNI------QNISDLAGLSRQDIFLTCAL-TIFL 377
                I+ +M   FF  +L L    G+ I      Q+I  + GL ++ + +T A   I  
Sbjct: 330 A--AAIFHLMTHAFFKALLFL--GAGSVIHAMHHEQDIRKMGGLRKK-MPVTYATFLIGT 384

Query: 378 FSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVI 426
            +L GIPPFAGFF K  +L +A       L +  L+ + ++A+Y  R+I
Sbjct: 385 LALIGIPPFAGFFSKDEILEAAFANGHINLFVAGLVGAFLTAFYSFRLI 433


>gnl|CDD|168619 PRK06588, PRK06588, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 506

 Score = 47.9 bits (114), Expect = 7e-06
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 19/251 (7%)

Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178
           ++C+ +A D IS  +SLE  +    ++I  ++     I+ A +YF+   FSS  +L G++
Sbjct: 62  IICVFAA-DFISMIISLEFMTIFACIIIFCDQ---LKIKPARQYFLTHLFSSGLILIGMT 117

Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238
            +   T  T F+ +  S+     +F L    + IL G     + +  + W+ + Y   P+
Sbjct: 118 LLIQTTSNTAFTSLTESVN----NFEL--PAIFILAGCLINASAIFVNGWVVNCY---PI 168

Query: 239 FMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRL 298
             ++ +  +  F T + L  I  +F    SGL  I     I  ++ G V ++ +K+LKRL
Sbjct: 169 ASSSGIVYLISFTTKVTLIIILKLF----SGL-EILKFFGISMIIYGLVFSLIEKNLKRL 223

Query: 299 MAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISD 358
           + Y ++   G+ L   S     I  ++   +   I+  G F+   +   +D  +I+N  D
Sbjct: 224 ICYLTVSQLGFILAAISINSPNIAYLITSFIFIHILYNGLFALYFAY-IEDEYDIKNYQD 282

Query: 359 LAGLSRQDIFL 369
           L       I L
Sbjct: 283 LQNTQINFILL 293


>gnl|CDD|183666 PRK12666, PRK12666, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 528

 Score = 44.8 bits (107), Expect = 4e-05
 Identities = 63/292 (21%), Positives = 119/292 (40%), Gaps = 39/292 (13%)

Query: 156 IEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT--SLFIGHRSFVLIVGVVLIL 213
           + A L Y  +   +S+  L G+  IYG TG    + +A   +        +L  G  L+L
Sbjct: 158 VRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAADRALLEAGAALLL 217

Query: 214 VGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-- 271
           V    K A+ P + W+P  Y  +   + A  A + K     A+ R++++ +   +G    
Sbjct: 218 VVFLIKAAMWPLNFWLPPAYAAASAPVAALFAIMTKVGI-YAILRLSTLLFGPEAGASAG 276

Query: 272 ---PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG----------- 317
                 +   + ++  G++  +  + L+RL AY  +  +G  L     G           
Sbjct: 277 FGQDWLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAATAAALYY 336

Query: 318 ----MLGIVAMVRYMVIYLIMMI-GFFSCILSLRRKDGNNIQNISDLAGLSRQD------ 366
                L   A+  +++  L+    G  +  L++  +  +  +   +  G++         
Sbjct: 337 LVHSTLAAAAL--FLLADLVERQRGAAADRLAVTPELYDLDEEEEEEVGVAIPATMALLG 394

Query: 367 -IFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVI 417
            +F  CAL     +LAG+PP +GF GK F L+ A+       A   L + V+
Sbjct: 395 LLFFICAL-----ALAGLPPLSGFLGK-FALLQALLNPPGAGAAWWLWALVL 440


>gnl|CDD|180955 PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F;
           Validated.
          Length = 613

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 34/277 (12%)

Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLI--VGVVLILVGLFFKMALVPFHMWI 229
            LL G+  +    G   FS +A      +   +    +G+ LI  G   K A  P H+W+
Sbjct: 186 LLLMGVVALSPLAGTLNFSDLAAWAATANLDPLTATLLGLALI-AGPTGKCAQFPLHLWL 244

Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSM--VLGSV 287
            +  EG P   +    ++        L ++  V    LS +    + + IG++  +  S+
Sbjct: 245 DEAMEG-PNPASILRNSVVVATGAWVLIKLQPVL--ALSPVALTVL-IVIGTVTAIGASL 300

Query: 288 VAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI---------VAMVRYMVIYLIMMIGF 338
           VAI Q D+KR ++YS+  + G   I        I         +A        L M +G 
Sbjct: 301 VAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKA-----LLFMSVG- 354

Query: 339 FSCILSLRRKDGNNIQNISDLAGL-SRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLI 397
            S IL+         Q++++L GL SR        L      L  + P  GF+    L  
Sbjct: 355 -SIILT------TITQDLTELGGLWSRMPATTLAFLVGSA-GLVALLPLGGFWALLRLAD 406

Query: 398 SAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQS 434
                  +++ ++ LL + ++A+   RV  +++  + 
Sbjct: 407 GLWAVSPWLVGVL-LLVNALTAFNLTRVFRLVFLGKP 442


>gnl|CDD|181206 PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed.
          Length = 593

 Score = 36.7 bits (85), Expect = 0.012
 Identities = 41/198 (20%), Positives = 96/198 (48%), Gaps = 24/198 (12%)

Query: 213 LVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP 272
           ++G      ++P H W+P  +  +     A  +T+      + L  I ++   +L G  P
Sbjct: 187 VIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV---VMKIGLLGILTL--SLLGGNAP 241

Query: 273 IF-----MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI------ 321
           ++     + + + +  +G + A+ + +++RL+AY ++ + G  L+G   G+ GI      
Sbjct: 242 LWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPA 301

Query: 322 -VAMVRYMVIYLIMMIGFFSCIL-----SLRRKDGNNIQNISDLAGLSRQDIFLTCALTI 375
            +A+     +Y ++    F  +L     S+  + G+  ++I  L G+ ++   ++ A+ +
Sbjct: 302 LIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGH--RDIEKLGGIGKKMPVISIAMLV 359

Query: 376 FLFSLAGIPPFAGFFGKY 393
            L ++A +PP  GF G++
Sbjct: 360 GLMAMAALPPLNGFAGEW 377


>gnl|CDD|183664 PRK12664, PRK12664, putative monovalent cation/H+ antiporter
           subunit D; Reviewed.
          Length = 527

 Score = 33.6 bits (77), Expect = 0.11
 Identities = 60/325 (18%), Positives = 122/325 (37%), Gaps = 43/325 (13%)

Query: 83  LLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAV--LGMLCMISANDMISFYMSLELQSF 140
           L++  ++ F      +Y+ P     F  ++   +  +  +  IS++ +    +  E  + 
Sbjct: 38  LVLFIVLSFSLALIFLYILPIKNMRFSEMLCYLLYYISSIAAISSSSLTLVVIGFEFMAL 97

Query: 141 ALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYG-ISFIYGFTGCTGFSQIATSLFIG 199
           +  ++IA                  G    AF+ Y  + F  G     G S  A +    
Sbjct: 98  SALMIIAAG--------------CPGGNIGAFIHYACVHFFSGVLLLVGASGQAQNGQYT 143

Query: 200 HRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRI 259
                     +L ++GL    A  P   W+ D Y  +  F    L+    F T +A    
Sbjct: 144 GYC------KLLFMLGLLINCACFPASSWVVDAYPAASNFGIIVLSL---FTTKVAAL-- 192

Query: 260 TSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGML 319
             V     SG   I + + I + + G + A  +++++RL+ Y+ +G  G  +I       
Sbjct: 193 --VLLLFFSGE-EILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGS 249

Query: 320 G------IVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCAL 373
                  ++  +   V+Y  ++      +++  RK      N++ + GL +  +   C +
Sbjct: 250 SGVAIGILILQIVLSVVYQTLLFMVADSVINRTRK-----FNLNRVGGLFKMSLEAMCCI 304

Query: 374 TIFLFSLAGIPPFAGFFGKYFLLIS 398
            I + ++   P  AGF  K  +  S
Sbjct: 305 -IAILNMGAFPGTAGFVSKSLITHS 328


>gnl|CDD|181264 PRK08168, PRK08168, NADH dehydrogenase subunit L; Provisional.
          Length = 516

 Score = 32.7 bits (75), Expect = 0.23
 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%)

Query: 113 LMAVLGML-CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171
           L  VL  +  ++ ++ ++    +    S AL+ L+       F+  AA K F+    +  
Sbjct: 106 LAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRLAEL 165

Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPD 231
            LL   +  Y   G    S +   L     S  L    +L+++ +  K A +P H W+  
Sbjct: 166 LLLAAAALAYLEVGSLSLSALWAHLAAQGASPSLQAAALLLVLAVILKTAQLPVHGWLIQ 225

Query: 232 VYE 234
           V E
Sbjct: 226 VME 228


>gnl|CDD|129992 TIGR00914, 2A0601, heavy metal efflux pump (cobalt-zinc-cadmium).
           This model represents a family of H+/heavy metal cation
           antiporters. This family is one of several subfamilies
           within the scope of pfam model pfam00873.
          Length = 1051

 Score = 30.5 bits (69), Expect = 1.1
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 17/140 (12%)

Query: 180 IYGFTGCTG--FSQIATSLFIGHRS-FVLIVGVVLILVGLFFKMAL----VPFHMWIPDV 232
           I+  TG  G  F  +A ++ +      +L +  V   V LF +  +          +   
Sbjct: 466 IFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKRR 525

Query: 233 YE-------GSPM-FMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVL 284
           YE         P   + A   +I          R+   F P L+     +  + I    L
Sbjct: 526 YEPLLERVLAWPAVVLGAAAVSI--VLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSL 583

Query: 285 GSVVAIRQKDLKRLMAYSSI 304
              VA++Q   K + ++  +
Sbjct: 584 AQSVAMQQTLEKLIKSFPEV 603


>gnl|CDD|184222 PRK13665, PRK13665, hypothetical protein; Provisional.
          Length = 316

 Score = 29.1 bits (66), Expect = 2.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWI 229
              LI+  VLI++ L    + VP  +WI
Sbjct: 4   LIGLIIIAVLIIIFLIVFFSFVPVGLWI 31


>gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase.
          Length = 699

 Score = 28.9 bits (64), Expect = 2.9
 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 25/174 (14%)

Query: 82  ILLMSSIIIFIKMFSCIYV-------KPFSCFEFPVIM--LMAVLGMLCMISANDMISFY 132
           ++L++  ++FI + SC+Y+       +P   ++    M  ++ V+  L +++A ++    
Sbjct: 55  LVLLTVPMMFIAVLSCVYLHTQKKPTQPQREWKLKRRMGRVIMVMNPLGIVTATELTFSL 114

Query: 133 MSLELQSFALYVLIAM-------NRKSVFSIEAALKYFVL-----GAFSSAFLLYGI--- 177
           + + L +++LY  + +       N  +    +A  + F L     G    AFL + +   
Sbjct: 115 LFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRA 174

Query: 178 SFIYGFTGCTGFSQIATSLFIGHRS-FVLIVGVVLILVGLFFKMALVPFHMWIP 230
           S I    G T  S I   +++GH S F+ +V  V+ L+       L+    W P
Sbjct: 175 STILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLMETFAWNP 228


>gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional.
          Length = 230

 Score = 28.3 bits (63), Expect = 4.1
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 265 PMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGML 319
               G+L +       S  L     IR   L +L+    IGHAG  L  F+TG++
Sbjct: 6   ESKEGILLVDKPQGRTSFSL-----IR--SLTKLIGVKKIGHAG-TLDPFATGVM 52


>gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
           Provisional.
          Length = 679

 Score = 27.9 bits (63), Expect = 6.0
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 367 IFLTCALT-IFLFSLAGIPPFAGFFG 391
           I L   LT IFL  +A +PPFA + G
Sbjct: 220 ILLA-GLTIIFLLVVATLPPFAAYSG 244


>gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111.
            Members of this protein family probable
           glycosyltransferases of family 2, whose genes are near
           those for Gram-positive proteins (TIGR03110) related to
           the proposed exosortase (TIGR02602).
          Length = 439

 Score = 27.8 bits (62), Expect = 7.0
 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 40  HLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIY 99
           H   FP  +   A+ FL+ + Y    + G+ +     Y + + L   ++ IF+K +  I 
Sbjct: 317 HTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLIYILYVLSSFLNFINVKIFLKEYKEI- 375

Query: 100 VKPFSCFEFPVIMLMAVLGMLC 121
            + +   ++ +I L+ +   + 
Sbjct: 376 -RDYYKKKWYIIFLLPIYNFVV 396


>gnl|CDD|183993 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
          Length = 410

 Score = 27.6 bits (62), Expect = 8.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG 320
            S+ +G +V + +  LKR       GH    LIG  TG +G
Sbjct: 45  PSLHIGHLVPLMK--LKRFQDA---GHRPVILIGGFTGKIG 80


>gnl|CDD|129116 TIGR00004, TIGR00004, endoribonuclease L-PSP, putative.  This
           protein was described initially as an inhibitor of
           protein synthesis intiation but is now viewed as an
           endoribonuclease active on single-stranded mRNA. The
           cleavage of mRNA is responsible for the inhibition of
           protein synthesis. A role in purine regulation has also
           been suggested.
          Length = 124

 Score = 27.3 bits (61), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYF 394
           N++ I + AGLS  D+  T   T+FL  L         +G+YF
Sbjct: 56  NLKAILEAAGLSLDDVVKT---TVFLTDLNDFAEVNEVYGQYF 95


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.337    0.148    0.446 

Gapped
Lambda     K      H
   0.267   0.0744    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,905,178
Number of extensions: 547459
Number of successful extensions: 2826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2584
Number of HSP's successfully gapped: 259
Length of query: 478
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 381
Effective length of database: 3,898,497
Effective search space: 1485327357
Effective search space used: 1485327357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 59 (26.5 bits)