RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus str. psy62] (478 letters) >gnl|CDD|180252 PRK05777, PRK05777, NADH:ubiquinone oxidoreductase subunit N; Provisional. Length = 476 Score = 393 bits (1011), Expect = e-110 Identities = 189/438 (43%), Positives = 279/438 (63%), Gaps = 7/438 (1%) Query: 9 DLRLCIPEIIIAFGILFLLLMGVFSRRKNAF-HLVVFPVCLLSIALFFLLIMPYEGIGLG 67 +L L +PE+I+ + LLL+ F RR + L V + L +AL F+L G G Sbjct: 7 NLILLLPELILLGAAVVLLLIDAFVRRHSRRATLAVLALLLALVALLFVLGAAGGGTAFG 66 Query: 68 GAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISAND 127 G + D F+ F+K ++L++S++ + + Y++ EF +++L A+LGM+ M+SAND Sbjct: 67 GMLVVDGFALFLKGLILLASLLALL--LARPYLEDRGRGEFYLLVLFALLGMMVMVSAND 124 Query: 128 MISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCT 187 +++ ++ LEL S LY L A+ R S+EAA+KYFVLGA +S FLLYG+S +YG TG Sbjct: 125 LLTLFLGLELLSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184 Query: 188 GFSQIATSLFIG-HRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLAT 246 F+ IA +L G S +L+ G+V +LVGL FK++ VPFHMW PDVYEG+P +TAFLAT Sbjct: 185 SFAGIAKALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLAT 244 Query: 247 IPKFATTMALCRITSVFWPMLSG-LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIG 305 PK A L R+ V + LS + ++I SM++G++ A+ Q ++KRL+AYSSI Sbjct: 245 APKIAAFAVLLRLLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIA 304 Query: 306 HAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364 HAGY L+G + G G A++ Y++ YL M +G F I LRRK G +ISD AGLS+ Sbjct: 305 HAGYLLVGLAAGTAEGYSAVLFYLLAYLFMTLGAFGVISLLRRKGGEAE-SISDFAGLSK 363 Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424 + L +TIF+ SLAGIPP AGF+GK+++ +AV+ + LA++ +L+S I A+YYLR Sbjct: 364 RSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLR 423 Query: 425 VISIMWFDQSTECVVVVA 442 VI +M+FD+ V Sbjct: 424 VIKLMYFDEPPRDAPVNW 441 >gnl|CDD|162524 TIGR01770, NDH_I_N, proton-translocating NADH-quinone oxidoreductase, chain N. NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. Length = 468 Score = 302 bits (776), Expect = 1e-82 Identities = 185/427 (43%), Positives = 267/427 (62%), Gaps = 8/427 (1%) Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFH-LVVFPVCLLSIALFFLLIMPYEG----IGLGG 68 +PEII+ G LLL G+F RK L+ ++ ++L L + + Sbjct: 5 LPEIILLLGAFILLLYGLFYSRKKRNPLLLKNLFYIVLLSLLVSLFLTLQYASYLFTGFS 64 Query: 69 AYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDM 128 +I D FS IK ILL+S++++F S + + FEF +++L A+LG+ ++S+ND+ Sbjct: 65 FFIVDNFSLIIKLILLLSTLLLFFFALSYFSKEKINKFEFYILLLFALLGIFLLVSSNDL 124 Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTG 188 +S Y+ LELQS YVL A+ RKS FS EA LKYF+LGAFSS LL+GIS IYGFTG Sbjct: 125 LSIYLGLELQSLCFYVLAALKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184 Query: 189 FSQIATSLFIGHRSF-VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247 F + L +L++G+V ILVGL FK++ VPFHMW+PDVYEG+P +TAF + + Sbjct: 185 FEDLLLFLSNLGNDISLLLLGIVFILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIV 244 Query: 248 PKFATTMALCRIT-SVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306 PK A L R+ + + + ++ SM++G+ A+ QK +KRL+AYSSI H Sbjct: 245 PKIAIFAVLLRLFGYILFAFSPIWQIFLLICAVLSMLIGNFGALAQKKVKRLLAYSSISH 304 Query: 307 AGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365 GY LIG G L GI A++ Y+ IY +M IG F + LR + I+ ISD AGL + Sbjct: 305 VGYILIGLLAGTLEGIKAVLFYIFIYALMSIGAFGVLALLRSRKDEWIEYISDFAGLFKT 364 Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425 + + + IF+FSLAGIPP AGFFGK+++ + +K Y+LA++A+L+SVISA+YYLRV Sbjct: 365 NPLIAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYLLAVIAILTSVISAFYYLRV 424 Query: 426 ISIMWFD 432 + +M+FD Sbjct: 425 VKVMYFD 431 >gnl|CDD|179434 PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit 2; Provisional. Length = 513 Score = 259 bits (665), Expect = 9e-70 Identities = 163/424 (38%), Positives = 244/424 (57%), Gaps = 14/424 (3%) Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIM---PYEGIGLGGAY 70 +PE I+ +L +LL+ + R + L + L AL L + P I G++ Sbjct: 16 LPEGIVILTLLGVLLVDLIGGRTASRWLPYLAIAGLGAALVALALQWDNPNP-ISFLGSF 74 Query: 71 ISDRFSYFIKAILLMSSIIIFIKMFSCIYVKP--FSCFEFPVIMLMAVLGMLCMISANDM 128 +D S +AI+ +S+++ + S YV+ EF I+L A LG + + A ++ Sbjct: 75 NADNLSIAFRAIIALSTLVTL--LMSWRYVEQSGTPLGEFAAILLTATLGGMFLSGATEL 132 Query: 129 ISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT-GCT 187 + ++SLE S A Y+L ++ S EAALKY ++GA SSA LYG S +YG + G T Sbjct: 133 VMIFISLETLSIASYLLTGYMKRDPRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGST 192 Query: 188 GFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATI 247 S IA +L I S L + +V ++ G+ FK++ VPFH W PDVYEGSP + AFL+ Sbjct: 193 QLSAIALAL-ITSPSLGLALALVFVIAGIAFKISAVPFHQWTPDVYEGSPTPVVAFLSVG 251 Query: 248 PKFAT-TMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGH 306 K A +A+ + + F +F ++I SMVLG+VVA+ Q +KR++AYSSIG Sbjct: 252 SKAAGFALAIRLLVTAFPSFDEQWKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQ 311 Query: 307 AGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQ 365 AG+ +IG G G +MV Y++ YL M +G F+C++ + G + ISD AGL ++ Sbjct: 312 AGFVMIGLVAGTEAGYASMVFYLLAYLFMNLGAFACVILFSLRTGTD--QISDYAGLYQK 369 Query: 366 DIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRV 425 D LT L++ L SL GIPP AGFFGK +L + + Y+L +V L++SVIS YYY+RV Sbjct: 370 DPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429 Query: 426 ISIM 429 I +M Sbjct: 430 IKMM 433 >gnl|CDD|181404 PRK08375, PRK08375, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 487 Score = 165 bits (420), Expect = 2e-41 Identities = 112/449 (24%), Positives = 212/449 (47%), Gaps = 23/449 (5%) Query: 24 LFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYEGI---------GLGGAYISDR 74 ++L+ R + A L+V + ++ I G+G +D Sbjct: 18 ALIVLLPKRRRLRWALALLVAALTFALAISLLPQVLDGGVIAYVVGGWPPGIGIELRADS 77 Query: 75 FSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMS 134 S +L+ S + I +++ Y + F + L+ + G+L + D+ + ++ Sbjct: 78 LSALF--LLVTSILAIAALLYAIGYGEHRQTR-FYALFLLLLAGLLGALLTADLFNLFVF 134 Query: 135 LELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT 194 LE+ S + Y L+AM ++ AA KY ++G S FLL G+ +YG TG + +A Sbjct: 135 LEIMSLSSYALVAMGGDRR-ALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAG 193 Query: 195 SLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTM 254 +L + ++ +L+ L K A+ P H W+P Y +P +TA L+ + Sbjct: 194 AL---AENPTVVTAFGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVY 250 Query: 255 ALCRIT-SVF---WPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYA 310 AL RI +VF + GL + +++ SM++GS+ A+ Q D+KR++AYS++ GY Sbjct: 251 ALIRIYFTVFGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYI 310 Query: 311 LIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFL 369 L+G + L + A + +++ + +M F ++ G + +S+L+GL R+ Sbjct: 311 LLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYG--TRRLSELSGLGRRMPLT 368 Query: 370 TCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIM 429 A + SL G+PP +GF K++L++ AV+ +++ V L SS+++ Y+LR+ Sbjct: 369 AAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRA 428 Query: 430 WFDQSTECVVVVAKEMRLFIFGSILFVTG 458 +F +E L + L + Sbjct: 429 FFGPPPPGSEAPKQEAPLGMLAPSLALAL 457 >gnl|CDD|181406 PRK08377, PRK08377, NADH dehydrogenase subunit N; Validated. Length = 494 Score = 152 bits (385), Expect = 2e-37 Identities = 102/360 (28%), Positives = 180/360 (50%), Gaps = 7/360 (1%) Query: 82 ILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141 +L+++ + + +FS V+ ++ ++ L+ +LG MI+ D+ + ++ +E+ + Sbjct: 84 VLIIAIVSFIMSIFSLKAVEVEPIDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAIT 143 Query: 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR 201 Y L A N K+ + EA++KY VLG S+F L G++ IYG TG + IA L Sbjct: 144 AYALTAYN-KTGEAAEASMKYIVLGGIGSSFFLIGVALIYGATGTLNMAHIA-QLAGTID 201 Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITS 261 V VG+ L++ GL + L P + W PD Y+ +P +T + A A+ RI Sbjct: 202 PTVAQVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILY 261 Query: 262 VFWPM--LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-M 318 + S +L + + ++ ++ + A+RQK++KR++AYSSIG G + + G Sbjct: 262 LMQNANGWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQ 321 Query: 319 LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLF 378 G+ A V +M+ + I+ F + + G I GL ++ ALTI Sbjct: 322 AGVDAGVFHMINHAIVKALLFLAVGYVGITLGGT--EIEKFEGLGKRMPLTALALTIGAL 379 Query: 379 SLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECV 438 S GIP F F+ K+ ++++ + + + L +SV+ A YY R+I MWF E + Sbjct: 380 STVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFKGEGERI 439 >gnl|CDD|183667 PRK12667, PRK12667, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 520 Score = 143 bits (364), Expect = 6e-35 Identities = 127/506 (25%), Positives = 220/506 (43%), Gaps = 55/506 (10%) Query: 14 IPEIIIAFGILFLLLMGVFSRRKNAFH---LVVFPVCLLSIALFFLLIMPYEGI------ 64 P +++ F L LL + + L+V + L+ L F+ + Sbjct: 9 TPILLVLFAFLLPLLSILLKGNRKIQKIYALLVSLITLILSILLFIQVYSSNKPIVYLFG 68 Query: 65 ----GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVL-GM 119 +G Y D + LL + ++ I ++S Y++ S E+ +L+ + GM Sbjct: 69 GWPAPIGIVYEVDLLGALL--GLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGM 126 Query: 120 LCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISF 179 L ++ D + ++ LE+ S + Y L+A R ++EAA+KY ++GA + ++F Sbjct: 127 LGILLTGDAFNLFVMLEVLSISAYGLVAYYRDRGDAVEAAIKYALIGAVGTTLYFLALAF 186 Query: 180 IYGFTGC----------TGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229 +Y G G S T G+ L V + L L K A+ P H W+ Sbjct: 187 LYATFGTLNMADLSAKIRGLSFPLTGGLAGNPPLALGVALALALWAFTIKAAIFPNHFWL 246 Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRI-------TSVFWPMLSGLLPIFMCVSIGSM 282 PD + +P ++A L+ + A+ R + + L PI + + S Sbjct: 247 PDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFRAALSPILIILGAVSA 306 Query: 283 VLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIY------LIMM 335 ++G+++ + QKD+KRL+AYS+I H GY +G G LG+ A + +++ + L + Sbjct: 307 IIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLA 366 Query: 336 IGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFL 395 G F R +I +LAGL R+ + A I SL GIPP GFF K L Sbjct: 367 SGVFIHAAGTR--------DIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLL 418 Query: 396 LISAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKE-----MRLFIF 450 + ++ FY+ A+V L++S IS Y R ++F + V KE + + + Sbjct: 419 FNALLESGFYLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEEVEHKESPSMSVVILVL 478 Query: 451 GSILFVTGYFL--IENILNSSIMKIV 474 + + G + IL+S I Sbjct: 479 ALAVLILGILALFLPEILDSLIEPAA 504 >gnl|CDD|181405 PRK08376, PRK08376, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 521 Score = 132 bits (335), Expect = 1e-31 Identities = 121/421 (28%), Positives = 214/421 (50%), Gaps = 31/421 (7%) Query: 73 DRFSYFIKAILLMSSIIIFIK-MFSCIYVKPFSCFE-FPVIMLMAVLGMLCMISANDMIS 130 D F F+ L+++I+ F+ ++S Y+K + + + ++L+ LGML M D+ + Sbjct: 89 DLFGAFM---ALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFN 145 Query: 131 FYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS 190 F++ LE+ S A Y L+A + +IEA +KY +G+ +S+ +L GI+ +YG G + Sbjct: 146 FFVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSMVLLGIALLYGQYGTLNMA 205 Query: 191 QIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKF 250 +A + + V + + L + GL K VP HMW+PD Y +P ++A L I K Sbjct: 206 YLAVKMSEN-PTVVAKIALALFIAGLAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI-KQ 263 Query: 251 ATTMALCRIT-SVFWPMLSG-----LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 A AL R+ S++ P ++ ++ I C+ +M +G +A+ QKD+KRL+AY S+ Sbjct: 264 AGLYALARVLFSIYGPAINLATVGWVIIILGCL---TMFVGVAMAVVQKDVKRLLAYHSV 320 Query: 305 GHAGYALIGFSTGM--LGIVAMVRY------MVIYLIMMIGFFSCILSLRRK---DGNNI 353 GY L+G G+ LG AM Y IY I+ + +L L Sbjct: 321 SQIGYMLLGLGVGLAALGDPAMASYGEIALAGGIYHIVNHALYKALLFLTAGAVIYETGT 380 Query: 354 QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALL 413 +N+++L GL+R T A I ++ G+PPF GF K +L+ + +L ++A++ Sbjct: 381 RNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASK-WLIYESSALFNPILGVIAMI 439 Query: 414 SSVISAYYYLRVISIMWFDQSTECVVVV---AKEMRLFIFGSILFVTGYFLIENILNSSI 470 SV++ +++V +F +E V+ V K M + + + + G L ++ + Sbjct: 440 GSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPMLVPMLILAIAIIGMGLFPWQISDKL 499 Query: 471 M 471 M Sbjct: 500 M 500 >gnl|CDD|183662 PRK12662, PRK12662, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 492 Score = 132 bits (333), Expect = 2e-31 Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 17/366 (4%) Query: 84 LMSSIIIFIKMFSCIYVKPFSCFEFPV--------IMLMAVLGMLCMISANDMISFYMSL 135 M ++ FI + S +Y + E V L+ + G+L ++ +ND+ + Y+ L Sbjct: 80 TMLVLVNFIAVMSVLYGIYPNRKEISVNKIPSFYSAFLLCLGGLLGILVSNDVFNIYVFL 139 Query: 136 ELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATS 195 E+ S + YVL+AM R ++ AA +Y ++G + F L GI F+Y TG + Sbjct: 140 EISSISSYVLVAMGRDKK-ALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMFLI 198 Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLA-TIPKFATTM 254 + + + +GV+ I+VGLF K AL PFH W+ Y +P F++ F + T K + Sbjct: 199 IQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYL 258 Query: 255 ALCRITSVFWPMLSGLLP----IFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYA 310 + + VF +FM ++ ++V GSV+AI KD+KR+ AYSSI H GY Sbjct: 259 IIRIVYDVFKANFVFTTLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYI 318 Query: 311 LIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFL 369 ++ S G+ A V Y+V + I+ F S+ G + D L + + Sbjct: 319 ILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSISYHFGTT--KLEDCLNLWKSMPKI 376 Query: 370 TCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIM 429 T A + SL G+PP +GF K+++L + +K ++ +V L+ S +S Y +++ + Sbjct: 377 TLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKSNAWIGLVVLLVGSGLSVIYVWKIVEAL 436 Query: 430 WFDQST 435 +F+ Sbjct: 437 YFESRM 442 >gnl|CDD|181533 PRK08668, PRK08668, NADH dehydrogenase subunit M; Validated. Length = 610 Score = 121 bits (305), Expect = 5e-28 Identities = 101/363 (27%), Positives = 180/363 (49%), Gaps = 18/363 (4%) Query: 84 LMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALY 143 ++S ++IF F + K + F + LM++ G+L + AND+++ Y+ E+ +F+ + Sbjct: 76 MISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSF 135 Query: 144 VLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIG-HRS 202 +++ M +K S +A+LKYFVL A + +LY I IY TG F+ I+ L Sbjct: 136 MMVPMGKK--ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLINDTSTG 193 Query: 203 FVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL------ATIPKFATTMAL 256 F LIV + L+ G K + P H+W PD Y +P +A L F + + Sbjct: 194 FALIVFLFLLAFG-VAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYV 252 Query: 257 CRITSVFWPM-----LSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYAL 311 T +F + I + S+++G+++AI Q+D+K+L+AYSS+ + GY L Sbjct: 253 LPGTKLFSEFGTYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYIL 312 Query: 312 IGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLT 370 +G G LG + ++ + + FF ++ + G IS++ GL + F Sbjct: 313 VGLGLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGT--TKISEMGGLIEKMPFTF 370 Query: 371 CALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMW 430 + + SLAGIPP +GF K+ + + + + + A +A S+ S Y R ++ ++ Sbjct: 371 AMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVF 430 Query: 431 FDQ 433 Q Sbjct: 431 LGQ 433 >gnl|CDD|183663 PRK12663, PRK12663, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 497 Score = 115 bits (291), Expect = 2e-26 Identities = 92/331 (27%), Positives = 160/331 (48%), Gaps = 7/331 (2%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167 P I+L+ + G++ D+ + Y+ E+ A +VLI + + + A+KY VL Sbjct: 111 PPFILLL-MAGVIGSFLTGDLFNLYVWFEVMLIASFVLITLG-QEREQLRGAIKYVVLNL 168 Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227 S L GI +YG G + IA L + L +L L+ K AL PF M Sbjct: 169 IGSWLFLLGIGLLYGTFGTLNMAHIAMRLNDMGDTATLTTIALLFLLAFGMKAALFPF-M 227 Query: 228 WIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGS 286 W+P Y + A A + AL R+ ++ +P LL P+ ++ +MV+G+ Sbjct: 228 WLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPQERELLHPLLATMAAITMVIGA 287 Query: 287 VVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSL 345 + A+ KD++R+ Y I G+ L+G + G GI + Y+V +++ F SL Sbjct: 288 LGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGAIFYLVHDMVVKTALFLIAGSL 347 Query: 346 RRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFY 405 R G +++ L GL R++ I +F++ G+PPF+GF+GK L+ A+ Y Sbjct: 348 VRLTGY--RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAY 405 Query: 406 VLAIVALLSSVISAYYYLRVISIMWFDQSTE 436 +L + L++S+I+ Y R+ + ++ Sbjct: 406 ILLALMLITSLITMYSLFRIFFLAYWGDKDG 436 >gnl|CDD|180504 PRK06277, PRK06277, hydrogenase subunit F; Validated. Length = 478 Score = 100 bits (251), Expect = 9e-22 Identities = 108/413 (26%), Positives = 194/413 (46%), Gaps = 21/413 (5%) Query: 17 IIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMPYE---GIGLGGAY--- 70 +++ F ++ ++ + + + F V +L L FL Y G GL Y Sbjct: 6 LMVVFPMICAIIFNLLHGKDKLIKYLTFIVAILLPILPFLASYGYYYFGGHGLVNGYHSG 65 Query: 71 ISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMIS 130 I+ F+ + I+ + S+I + + + + K S + +MLM + + ++ A+D+ + Sbjct: 66 ITYLFNPAKQIIIFVLSLIASLVLITGLGEKKSSGL-YVFLMLMGLASVSAIVLADDIFN 124 Query: 131 FYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS 190 Y+ E+ + L+ + + +AALKY +LG + + LL GI F+ TG + Sbjct: 125 LYVFFEIAAIVQVGLVIASGTE-EAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNIT 183 Query: 191 QIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKF 250 I +L + S V+ G++L++ GL + L PFH D+Y + F +A L T KF Sbjct: 184 DIHNALLVNPTSPVIYGGLLLLIFGLLYGSGLPPFHTIKSDIYAKAKPFGSALLQTFSKF 243 Query: 251 ATTMALCRITSVF--WPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG 308 + I +F + + +S+ +MV G V+A+ Q D KRL+AY +I G Sbjct: 244 VLVALMLVIFKLFGGLSYFPSAQGVLIALSVLAMVFGVVMALLQTDYKRLLAYHAISQGG 303 Query: 309 YALIGFSTGM-LGIVA----MVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363 Y G + G LGIVA + +++ + +G I+S R K N+ L GL Sbjct: 304 YVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAG--IVSYRTKTS----NLRKLGGLL 357 Query: 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSV 416 + + +++G+PPF GF K L +A++ LAI+ ++ S+ Sbjct: 358 PVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSI 410 >gnl|CDD|162632 TIGR01972, NDH_I_M, proton-translocating NADH-quinone oxidoreductase, chain M. This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. Length = 479 Score = 100 bits (251), Expect = 1e-21 Identities = 88/358 (24%), Positives = 170/358 (47%), Gaps = 19/358 (5%) Query: 81 AILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSF 140 ++L+++++ + + + EF + L+ G++ + +A D++ FY+ E Sbjct: 80 PLVLLTALLTLLSILASWESIQKRVKEFYALFLLLEAGVIGVFAALDLLLFYVFWEAMLI 139 Query: 141 ALYVLIAM----NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQ-IATS 195 +Y+LI + NR I AA+K+F+ S +L I +Y G + I Sbjct: 140 PMYLLIGVWGGPNR-----IYAAMKFFLYTLAGSLLMLLAILGLYFLGGTFDLLELINLP 194 Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMA 255 L ++++ + + K+ L P H W+PD + +P + LA + T Sbjct: 195 LPFSVQTWLFLA----FFIAFAVKVPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYG 250 Query: 256 LCRITSVFWPMLSG-LLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIG- 313 R +P S P+ +++ +++ G+++A+ Q D+KRL+AYSSI H G+ L+G Sbjct: 251 FLRFNLPLFPDASLYFAPVLAALAVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGI 310 Query: 314 FSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCAL 373 FS LGI V M+ + ++ F + L + ++I+ GL+ + L Sbjct: 311 FSFNELGISGAVFQMISHGLITAALFLLVGVLYDRAHT--RDIAKYGGLANKMPVLAAFF 368 Query: 374 TIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMWF 431 +F + G+P +GF G+ FL++ + V+A +A L V++A Y L + ++F Sbjct: 369 MLFAMASLGLPGTSGFVGE-FLILLGAFKVNPVVAFLAALGIVLTAAYMLWLYKRVFF 425 >gnl|CDD|183665 PRK12665, PRK12665, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 521 Score = 97.0 bits (242), Expect = 9e-21 Identities = 85/319 (26%), Positives = 155/319 (48%), Gaps = 7/319 (2%) Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAF 172 L+ V G+ A D+ + Y+ E+ A YVL+ + + + A + Y ++ SS Sbjct: 118 LILVAGVSNAFLAGDLFNLYVGFEILLVASYVLLTL-GATAARVRAGVTYVMVSMVSSLL 176 Query: 173 LLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDV 232 L GI+ +Y TG + +A L + VL LV K A+ P W+PD Sbjct: 177 FLIGIALVYAATGTLNMADLAVRLDELPSGTRTALFAVL-LVAFGIKAAVFPLSFWLPDS 235 Query: 233 YEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292 Y +P +TA A + A+ R ++ +P GL + M V++ +MV+G + AI Q Sbjct: 236 YPTAPAPVTAVFAGLLTKVGVYAIIRTHTLLFPG-GGLDTLLMVVALLTMVVGILGAIAQ 294 Query: 293 KDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGN 351 D+KRL++++ + H GY + G + + G+ + Y+ ++ + F + + R+ G+ Sbjct: 295 SDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVAHHITVQTTLFLVVGLIERQAGS 354 Query: 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVA 411 + ++ L GL++ L + +L GIPPF+GF GK LL + + + LA Sbjct: 355 S--SLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLEAGAE-DGTWLAWAL 411 Query: 412 LLSSVISAYYYLRVISIMW 430 + V+++ L ++ +W Sbjct: 412 VAGGVVTSLLTLYAVARVW 430 >gnl|CDD|183650 PRK12650, PRK12650, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 962 Score = 93.6 bits (233), Expect = 1e-19 Identities = 93/341 (27%), Positives = 161/341 (47%), Gaps = 23/341 (6%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167 F ++M + ML ++ A+D++ +++ EL S A + LIA + +++ +L Sbjct: 112 FYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIARSGSG--GEAGSIRTLILTF 169 Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227 F LL ++ TG T S I S + + V VLI V F K A PFH Sbjct: 170 FGGLTLLAAVAIAATQTGTTSLSGILHSDVWAEKPGLTTVVAVLIAVAAFTKSAQFPFHF 229 Query: 228 WIPDVYEG-SPMFMTAFL--ATIPKFATTMALCRITSVFW--PMLSGLLPIFMCVSIGSM 282 W+P+ +P ++AFL A + K A L R + VF + + LL I V + + Sbjct: 230 WLPEAMAAITP--VSAFLHAAAVVK-AGIYLLLRFSPVFHDVAVWNWLLII---VGMITA 283 Query: 283 VLGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGMLGIVAMVRYMVIYLIMMIGFFS 340 ++G+V A+++ DLK+L AYS++ G+ A IG T + A V + + + + F Sbjct: 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTP-FALTAAVVHTLAHALFKSSLFM 342 Query: 341 CILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAV 400 I + + G ++I L L R+ F ++TI S+A +PP GF K +L + + Sbjct: 343 LIGVVDHQAGT--RDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFL 400 Query: 401 KREF-----YVLAIVALLSSVISAYYYLRVISIMWFDQSTE 436 + +L + A L +V + Y R++ + D + Sbjct: 401 EAPGGNAGVVLLLVGAALGAVFTFAYSARLVLGAFVDGPRD 441 >gnl|CDD|183647 PRK12647, PRK12647, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 761 Score = 88.8 bits (221), Expect = 3e-18 Identities = 90/330 (27%), Positives = 165/330 (50%), Gaps = 40/330 (12%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167 F +L+ + ML ++ ++++I+ ++ EL S ++LI N + + AAL+ ++ Sbjct: 97 FYSYILLFMASMLGLVLSDNLITLFVFWELTSITSFLLIGFNHEREAARRAALQALLVTG 156 Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATS--LFIGHRSFVLIVGVVLILVGLFFKMALVPF 225 LL G+ + TG S++ S + H ++ I+ +L+L G F K A PF Sbjct: 157 GGGLALLAGLILLGNVTGTYSLSELLASGDVIREHPLYLAIL--LLVLGGAFTKSAQFPF 214 Query: 226 HMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSG------LLPIFMCV 277 H W+P+ E +P ++A+L AT+ K A L R+ P+L G +LP+F + Sbjct: 215 HFWLPNAME-APTPVSAYLHSATMVK-AGIYLLARLN----PVLGGTPLWQTILPLFGGL 268 Query: 278 SIGSMVLGSVVAIRQKDLKRLMAYSSIGHAG--YALIGFSTGMLGIVAMVRYMVIY---- 331 + M+ G+++A+RQ DLK ++AYS++ G L+G + L I A V ++V + Sbjct: 269 T---MLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSE-LAIKAAVLFLVAHSLYK 324 Query: 332 --LIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGF 389 L M+ G + + G ++I+ L GL R A + S+AG+PP GF Sbjct: 325 GALFMVAG------IIDHETGT--RDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGF 376 Query: 390 FGKYFLLISAVKREFY--VLAIVALLSSVI 417 K + + ++ + +L + A+L + + Sbjct: 377 LAKELIYEALLEAPLWSLILTVAAVLGNAL 406 >gnl|CDD|180900 PRK07234, PRK07234, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 470 Score = 87.3 bits (217), Expect = 7e-18 Identities = 80/302 (26%), Positives = 134/302 (44%), Gaps = 32/302 (10%) Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184 D+IS Y++LE+ S A ++L+A R +I L+Y + F L G +Y Sbjct: 113 CADLISLYVALEVLSIATFLLVAYPRTDR-AIWVGLRYLFYSNVAMLFYLIGAVLVYQAN 171 Query: 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL 244 G FS +AT+ LI +GL K + +W+P + + ++A L Sbjct: 172 GTFAFSGLATA-----DPEAF----ALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALL 222 Query: 245 ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304 + + A L R + GL I +G+ +LG + A+ +KDLKR++A+S+I Sbjct: 223 SGVVVKAGVFPLVRCA----LDVPGLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTI 278 Query: 305 GHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364 G+ L G L Y + + ++ F C +L + N + IS + G+ + Sbjct: 279 SQLGFILAAPLVGGL-------YALAHGLVKSTLFLCAGALPSR--NFTELISQMLGIGK 329 Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLR 424 LT+ FS+AG P AGF K L + + AI L++V +A + + Sbjct: 330 W-----IPLTMASFSIAGFPLLAGFVSKVLTLKNLLP----WQAIALNLAAVGTAASFWK 380 Query: 425 VI 426 I Sbjct: 381 FI 382 >gnl|CDD|181085 PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 496 Score = 86.5 bits (215), Expect = 1e-17 Identities = 70/304 (23%), Positives = 147/304 (48%), Gaps = 9/304 (2%) Query: 127 DMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186 D+ + ++ E+ A YVLI + + + ++KY ++ SSAF + ++ +Y G Sbjct: 129 DIFNLFVFFEVMLMASYVLIVIGGTKI-QLRESIKYVLINVVSSAFFVVAVAILYSVVGT 187 Query: 187 TGFSQIA---TSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAF 243 + I+ L G + +V ++ + V K L P + W+P Y P+ + A Sbjct: 188 LNMADISVKIAELSAGQTGLITVVAILFLFV-FATKAGLFPLYFWLPGSYYAPPIAIAAL 246 Query: 244 LATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYS 302 + A+ R ++F+ + + + +++ +++ G + A+ D+K+++ Y+ Sbjct: 247 FGALLTKVGVYAIARTFTLFFSHDTSFTHYLILILALLTIIFGVIGAVAYFDIKKIIIYN 306 Query: 303 SIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAG 361 + G L+G + G++ + Y++ +I+ F I + + G ++ + G Sbjct: 307 IMIAVGVILVGVAMMTESGMIGAIYYLIHDMIVKAALFLLIGIMIKITGTT--DLKKMGG 364 Query: 362 LSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYY 421 L ++ L I SLAGIPP +GF+GK+F++ + FYV I+ LLSS++ Y Sbjct: 365 LIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYS 424 Query: 422 YLRV 425 +++ Sbjct: 425 VIKI 428 >gnl|CDD|183646 PRK12646, PRK12646, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 800 Score = 84.8 bits (210), Expect = 4e-17 Identities = 83/347 (23%), Positives = 158/347 (45%), Gaps = 35/347 (10%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167 F + + + M+ ++ +++ I Y+ EL S + ++LI+ + S A++ F++ Sbjct: 112 FYFYLTLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGAIQSFMITV 171 Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227 F LL G +Y TG ++I + I + + L+G F K A PFH+ Sbjct: 172 FGGLALLVGFIMLYIMTGTNNITEILGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHI 231 Query: 228 WIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285 W+P +P ++A+L AT+ K A L R T + + + + I V + +M+ G Sbjct: 232 WLPRAMA-APTPVSAYLHSATMVK-AGIFLLFRFTPLL-GLSNMYIYIVTFVGLITMLFG 288 Query: 286 SVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTG--------MLGIVAMVRYMVIYLIMM 335 S+ A++Q DLK ++AYS+I G A++G G + I V + ++ +M Sbjct: 289 SITALKQWDLKGILAYSTISQLGMIMAMVGIGGGYAQHQQDAIASIYVFVLFAALFHLMN 348 Query: 336 IGFFSCILSLRRKDGNNI-------QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAG 388 F C L + G I ++I L+G+ + + +TI S+AG+P G Sbjct: 349 HAIFKCALFM----GVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNG 404 Query: 389 FFGKYFL---LISAVKREFY------VLAIVALLSSVISAYYYLRVI 426 F K L + + ++ + +++S+ + Y L ++ Sbjct: 405 FLSKEMFLDALTQTGQLSQFSLISMIIIVFIGVIASIFTFTYALYMV 451 >gnl|CDD|180285 PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed. Length = 497 Score = 84.5 bits (210), Expect = 5e-17 Identities = 80/324 (24%), Positives = 146/324 (45%), Gaps = 21/324 (6%) Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM----NRKSVFSIEAALKYFVLGAF 168 L G++ + +A D++ FY+ E +Y LI + NR I AA K+F+ Sbjct: 118 LWLEGGVIGVFAALDLLLFYVFFEAMLIPMYFLIGVWGGKNR-----IYAATKFFLYTLL 172 Query: 169 SSAFLLYGISFIYGF----TGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 S +L I ++ TG + + + L + + KM + P Sbjct: 173 GSLLMLVAIIYLVVVYYNATGTFDIADLLNLPLPPGVQYWLFLA---FFIAFAVKMPMFP 229 Query: 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSG-LLPIFMCVSIGSMV 283 H W+PD + +P + LA I L R + +P S PI + + + +++ Sbjct: 230 LHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAII 289 Query: 284 LGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCI 342 G++VA+ Q D+K+L+AYSSI H G+ +G G LGI + M+ + + F + Sbjct: 290 YGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLV 349 Query: 343 LSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKR 402 L + ++I+D GL++ L F + G+P +GF G++ +L+ + + Sbjct: 350 GVLYDRLHT--RDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQV 407 Query: 403 EFYVLAIVALLSSVISAYYYLRVI 426 V+A +A +++A Y L + Sbjct: 408 NP-VIAFIATTGLILAAVYSLWLY 430 >gnl|CDD|180571 PRK06458, PRK06458, hydrogenase 4 subunit F; Validated. Length = 490 Score = 84.6 bits (210), Expect = 6e-17 Identities = 75/311 (24%), Positives = 150/311 (48%), Gaps = 13/311 (4%) Query: 118 GMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGI 177 ML +++N++ ++++E + + +L+ + R S+EAA KY ++ + AF L+G Sbjct: 120 TMLLALTSNNLGLMWVAIEATTLSSALLVGIYRTRA-SLEAAWKYIIICSVGVAFALFGT 178 Query: 178 SFIY----GFTGCTGFSQIATSLFIGHRSF---VLIVGVVLILVGLFFKMALVPFHMWIP 230 +Y G + + T L ++ + V +L+G K+ L P H W+P Sbjct: 179 ILVYANAATVMGDGEMAILWTELLKHASLLDPTLMKLAFVFLLIGFGTKVGLFPMHAWLP 238 Query: 231 DVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP--IFMCVSIGSMVLGSVV 288 D + +P ++A L+ + A+ R + + P + + + S+++ + Sbjct: 239 DAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDFPGRLLLIFGLLSVLVAAFF 298 Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTG-MLGIVAMVRYMVIYLIMMIGFFSCILSLRR 347 +RQ+D+KRL AYSSI H G G LGI A + +M+ + + F ++ + Sbjct: 299 LLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQ 358 Query: 348 KDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVL 407 K G ++I+ + GL + L + ++AG+PPF F ++ +L + + R ++ Sbjct: 359 KYGT--RDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLI 416 Query: 408 AIVALLSSVIS 418 AI+ LL ++ Sbjct: 417 AILLLLLLTLA 427 >gnl|CDD|162123 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter. This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. Length = 793 Score = 81.4 bits (201), Expect = 5e-16 Identities = 100/379 (26%), Positives = 166/379 (43%), Gaps = 34/379 (8%) Query: 83 LLMSSIIIFIKMFSCIYV-KPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141 LL++ I + + ++S Y+ K F +L + ML ++ ++++I Y+ EL S Sbjct: 82 LLITGIGVLVVLYSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIV 141 Query: 142 LYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHR 201 ++LI+ S A K + F +L G+ + TG + S Sbjct: 142 SFLLISYWHHRAHSRYGAQKSLTITVFGGLAMLGGLILLGKITGSFSIDAVIASADAIRN 201 Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRI 259 S + +VL+L+G F K A PFH+W+PD E +P ++A+L AT+ K A L R Sbjct: 202 SPLFGTAMVLVLLGAFTKSAQFPFHIWLPDAME-APTPVSAYLHSATMVK-AGLYLLARF 259 Query: 260 TSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG-- 317 T VF I + +++ GS AI Q+DLK ++A+S+I G ++ G Sbjct: 260 TPVF-AGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGSP 318 Query: 318 ------------MLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL-SR 364 L VA V +++ + F + + G ++I L GL Sbjct: 319 SYHYQGDDSKIYALAAVAAVFHLINHATFKGSLFMAAGIIDHETGT--RDIRKLGGLFHI 376 Query: 365 QDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREF----------YVLAIVALLS 414 I T A+ I ++AG+PPF GF K A+ Y+ VA ++ Sbjct: 377 MPITFTLAM-IASAAMAGVPPFNGFLSKEMFFAEAITAHLVNPFDTVTLGYLFPYVATVA 435 Query: 415 SVISAYYYLRVISIMWFDQ 433 SV + Y LR I ++F + Sbjct: 436 SVFTFVYSLRFIHGVFFGR 454 >gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M; Validated. Length = 501 Score = 80.5 bits (199), Expect = 9e-16 Identities = 90/323 (27%), Positives = 161/323 (49%), Gaps = 20/323 (6%) Query: 111 IMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVLGAF 168 ++L+ G+ + A +++ F++ EL+ Y+LIA+ K + A++K+ + A Sbjct: 112 LILLINGGIAGALLAQNLLLFFLFYELELIPFYLLIAIWGGEKRGY---ASIKFLIYTAV 168 Query: 169 SSAFLLYGISFIYGFTGCTGF--SQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFH 226 S +L I +G T F I+T + +L+ G +L+G K+ LVP H Sbjct: 169 SGLLVLAAFLGIVWLSGSTSFDYDAISTQNLSLNTQLILLTG---LLLGFGIKIPLVPLH 225 Query: 227 MWIPDVY-EGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVL 284 W+PD Y E SP + L + T L R +P L+ P + S++ Sbjct: 226 TWLPDAYTEASPA-VAILLGGVLAKLGTYGLLRFGLQLFPQTWSLVAPGLAIIGTISVIY 284 Query: 285 GSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCIL 343 G++ AI QKD+KR++AYSSIGH GY L+ + G L ++ V M+ + +++ F + Sbjct: 285 GALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLVG 344 Query: 344 SLRRKDGNNIQNISDLAGLSR--QDIFLTCALTIFL-FSLAGIPPFAGFFGKYFLLISAV 400 + RK G +++ L GL + + LT AL + + AGIP GF + F++ Sbjct: 345 IVERKVGT--RDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAE-FIVFQGS 401 Query: 401 KREFYVLAIVALLSSVISAYYYL 423 F + ++ +++S ++A Y++ Sbjct: 402 FSTFPIPTLLCIVASGLTAVYFV 424 >gnl|CDD|181532 PRK08667, PRK08667, hydrogenase membrane subunit; Validated. Length = 644 Score = 79.8 bits (197), Expect = 2e-15 Identities = 97/416 (23%), Positives = 181/416 (43%), Gaps = 44/416 (10%) Query: 16 EIIIAFGILFLLLMGVF-----SRRKNAFHLVVFPVCLLSIALFFLLIMPYEGI------ 64 + IL LL V +RK + V++ V +++ LF + + G Sbjct: 3 AGLFLGAILLLLAAAVIPLVFRHKRKRVWQSVLWLVIAIALLLFAGSLQLFTGNPLDIPL 62 Query: 65 -----GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFE----FPVIMLMA 115 GL + DR + F I+L+ + + + ++S Y + S E + + Sbjct: 63 WGIAPGLDITFHIDRLAAFF--IILIGLVSLCVAIYSLGYNEHMSSNERANLLSALTALF 120 Query: 116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLY 175 +L ML ++++ + SF E+ + + + L+ + + + A + YFV+ S+ FL+ Sbjct: 121 ILSMLGVVASANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLML 180 Query: 176 GISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEG 235 GI ++ TG S + S I F +L+ +G K ++PFH W+P + Sbjct: 181 GIIVLFIQTGSFELSPLGASAGILSLVF------LLLFLGFGIKAGIIPFHKWLPYAHPA 234 Query: 236 SPMFMTAFLATIPKFATTMALCR-ITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKD 294 SP ++A ++ + L R + V P L + I + SI S +LG + A+++ D Sbjct: 235 SPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSI-SALLGVIYALKEHD 293 Query: 295 LKRLMAYSSIGHAGYALIGF------------STGMLGIVAMVRYMVIYLIMMIGFFSCI 342 LK L+AYSSI + G L+G + +L + + + + + + F Sbjct: 294 LKGLLAYSSIENIGIILMGIGLYVIFGVYGLDTLALLALGGALFHSLNHALFKSLLFLTA 353 Query: 343 LSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398 S+ G +NI + GL + + + + S+A +PPF GF + L S Sbjct: 354 GSVVHATGT--RNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYES 407 >gnl|CDD|180580 PRK06473, PRK06473, NAD(P)H-quinone oxidoreductase subunit D4; Validated. Length = 500 Score = 79.4 bits (196), Expect = 2e-15 Identities = 95/361 (26%), Positives = 180/361 (49%), Gaps = 23/361 (6%) Query: 82 ILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFA 141 +L+++S++ I ++S F + +++L+ G+ A D++ F++ EL+ Sbjct: 84 LLVLNSLLTLIAIYSSDESIQRPRFYYSLLLLLN-AGVSGAFLAQDLLLFFLFYELELIP 142 Query: 142 LYVLIAM---NRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFS---QIATS 195 LY+LIA+ R+ AA K+ + A S +L + +G + F + + Sbjct: 143 LYLLIAIWGGQRRGY----AATKFLLYTAISGILILVSFLGLVWLSGASSFDYEPLRSHT 198 Query: 196 LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMA 255 L + + +L ILVG K+ LVPFH W+PD + + ++ LA + T Sbjct: 199 LPLSTQLLLLA----PILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYG 254 Query: 256 LCRITSVFWP-MLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGF 314 L R +P L P ++ S++ G+ AI QKD+K+++AYSSIGH GY L+ Sbjct: 255 LLRFGVGLFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAA 314 Query: 315 STGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGL--SRQDIFLTC 371 + L I+A V M+ + ++ F + + +K G+ +++ L GL + + +T Sbjct: 315 AAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGS--RDVDVLRGLLNPERGLPITG 372 Query: 372 ALTIF-LFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVISIMW 430 +L I + + AGIP GF + FL+ F V ++ ++ + ++A Y+L +++ ++ Sbjct: 373 SLMILGVMASAGIPGMVGFIAE-FLVFRGSFPIFPVQTLLCMIGTGLTAVYFLLLVNRVF 431 Query: 431 F 431 F Sbjct: 432 F 432 >gnl|CDD|181537 PRK08676, PRK08676, hydrogenase membrane subunit; Validated. Length = 485 Score = 76.7 bits (189), Expect = 1e-14 Identities = 100/434 (23%), Positives = 194/434 (44%), Gaps = 38/434 (8%) Query: 22 GILFLLLMGVFSRRKNAFHL--VVFPVCLLSIALFFLLIMPYEGIGLGGAYIS-DRFSYF 78 L L +G+ SR + + + L ++L+ LL++P G + Y+ D F Sbjct: 8 VALLFLRLGLLSRSHRLLNALALGHGLWHLGLSLWVLLVLPLPGYFMESRYLFIDHLGIF 67 Query: 79 IKAILLMSSIIIFIKMFSCIYV-----------KPFSCFEFPVIMLMAVLGMLCMISAND 127 + +L+ S + I +++ YV + F +L++V+ +++ Sbjct: 68 V--VLIASVVFILAALYARGYVDHLLSNGELDPENLKVFYLGFNLLLSVITF--AFFSDN 123 Query: 128 MISFYMSLELQSFALYVLIA-MNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT-G 185 + F++ EL + +LIA ++ + +I+AALKY + + + F G+ F++ T Sbjct: 124 LALFWIFAELTTVFSAMLIAILSARE--NIDAALKYIFIASTAMIFAFIGLIFLFSLTRQ 181 Query: 186 CTGFSQIATSLFIGHRSF----VLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMT 241 G + + H S VL + I +G K LVPFH W+P Y +P ++ Sbjct: 182 ALGTGTLNWTELAAHASLLSPSVLGASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVS 241 Query: 242 AFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVA----IRQKDLKR 297 A L+ + R++++ SG F V IG + VA + Q++LK+ Sbjct: 242 ALLSGTVLNIGIYGILRLSALL--RQSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKK 299 Query: 298 LMAYSSIGHAGYALIGFSTGM-LGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNI 356 L+A+SSI H G L+G G L + M+ +M+ + ++ G F L R+ ++ + Sbjct: 300 LIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFD- 358 Query: 357 SDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVAL---L 413 + + R + + ++ G+PPF F K+F+L+ +++ V L L Sbjct: 359 -RIFDVFRLQPVAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLL 417 Query: 414 SSVISAYYYLRVIS 427 ++ A + L+ + Sbjct: 418 AASSFAIFLLKAFT 431 >gnl|CDD|180634 PRK06591, PRK06591, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 432 Score = 76.4 bits (188), Expect = 2e-14 Identities = 78/337 (23%), Positives = 143/337 (42%), Gaps = 33/337 (9%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIA--MNRKSVFSIEAALKYFVL 165 F I+L A G L MI+ ND + Y+ +E+ + + YVLIA N KS+ A Y ++ Sbjct: 117 FYGILLFAHTGYLGMIATNDFFNLYVFIEISALSSYVLIASGNNPKSLI---GAFDYLIM 173 Query: 166 GAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPF 225 G+ + +L I F+ TG + IA L S ++ + + L+G K A P Sbjct: 174 GSIGATLILIAIGFLLSITGSLNMTDIAAYLQEHTNSRIITIAIGFFLIGAILKTAFFPM 233 Query: 226 HMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVS------- 278 H W+ Y + + +LA I +T+ I F ++ G I ++ Sbjct: 234 HFWMMRAYNNTASVILVYLAGI----STIIGIYIIYKFTYIIIGYETIKTAITNFIRPIA 289 Query: 279 IGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGF 338 + ++++ A + K+ K ++ YS GY + + T GI+ + ++ I I Sbjct: 290 LATLIIAPYFAYQAKNFKNIIIYSCFTQIGYVFLLYVTEN-GIIILPSLLLADSINKIAL 348 Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398 F + D S + + I + G+P FF K +L Sbjct: 349 F----------------LIDAYNESYKREPNKVLIIIAIICSCGLPISPLFFIKVNILEL 392 Query: 399 AVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQST 435 + + + I+ LLSSV S +Y+ +++ +++ + Sbjct: 393 LLTQNLLLDFIIILLSSVGSLFYHYKMVLLLFPTKQE 429 >gnl|CDD|130019 TIGR00944, 2a6301s04, Multicomponent K+:H+antiporter. Length = 463 Score = 75.6 bits (186), Expect = 3e-14 Identities = 69/348 (19%), Positives = 145/348 (41%), Gaps = 7/348 (2%) Query: 113 LMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAF 172 + G+ D+ + ++ E+ A Y L+ + ++ LKY + SSA Sbjct: 112 QFLLAGLNGAFLTGDLFNLFVFFEMMLAASYGLLVHGSTKI-QLKEGLKYIAVNLVSSAL 170 Query: 173 LLYGISFIYGFTGCTGFSQIATSLFI---GHRSFVLIVGVVLILVGLFFKMALVPFHMWI 229 + G+S +YG G + ++T L R V + +L +V L K + P W+ Sbjct: 171 FVIGVSLLYGVAGTLNMADLSTKLAALEPRSRGLVEMGSALLGVVFLV-KAGMFPLSFWL 229 Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMC-VSIGSMVLGSVV 288 P Y P + A + A+ R+ + + +G ++ +++ +++ G + Sbjct: 230 PTAYYAPPPPIAAVFGALLTKVGIYAIIRLHLLVFGTAAGFGHEWLVTLAMLTIIFGGIG 289 Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRK 348 + +++ ++ Y+ + G L G + G G++A Y +++ ++ G ++ L + Sbjct: 290 VLAYQNMGKIAGYNVLVAVGVILAGVALGTDGMLAGAIYYLVHDMLTKGALFLLIGLVIR 349 Query: 349 DGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLA 408 G + GL ++ L I SLAGIPP +GF GK+ ++ + Sbjct: 350 -GTGTATLEAYGGLIKRYPVLGWCFFICALSLAGIPPLSGFIGKFAIISGLFDMGDWTYV 408 Query: 409 IVALLSSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFV 456 + LLSS+ Y R+ ++ V E++ + + + Sbjct: 409 TLLLLSSLAVLYSVNRIFIRTFWGSIKTIPRVNVIEIKPLVVLAGACI 456 >gnl|CDD|162634 TIGR01974, NDH_I_L, proton-translocating NADH-quinone oxidoreductase, chain L. This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. Length = 617 Score = 74.6 bits (184), Expect = 6e-14 Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 30/326 (9%) Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178 ML ++ A++ + + E Y+LI K + AA+K FV+ LL GI Sbjct: 127 MLMLVLADNFLQLFFGWEGVGLCSYLLIGFWYKKPSANNAAIKAFVVNRVGDFGLLLGIF 186 Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238 I+ + G F ++ +L G L + +L+ +G K A +P H W+PD EG Sbjct: 187 LIFWYFGTLNFQEV-FALAPGADFSALTLICLLLFIGAMGKSAQLPLHTWLPDAMEGP-- 243 Query: 239 FMTAFLATIPKFATTMA------LCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQ 292 T A I A TM + R TS + + L + + + + + VA+ Q Sbjct: 244 --TPVSALI--HAATMVTAGVYLVAR-TSPLFELSPTALYLVTIIGAITALFAATVALVQ 298 Query: 293 KDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNN 352 D+KR++AYS+ GY + G I+ +M FF +L L G+ Sbjct: 299 NDIKRILAYSTCSQLGYMFLALGVGAYAAA-------IFHLMTHAFFKALLFL--GAGSV 349 Query: 353 I------QNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYV 406 I Q+I + GL ++ I +L G P FAGFF K +L +A + Sbjct: 350 IHAMHHEQDIRKMGGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFASGTHS 409 Query: 407 LA-IVALLSSVISAYYYLRVISIMWF 431 + L+ + ++A+Y R+I + + Sbjct: 410 FLFVAGLIGAFLTAFYSFRLIFMTFH 435 >gnl|CDD|183645 PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed. Length = 800 Score = 74.2 bits (183), Expect = 6e-14 Identities = 82/308 (26%), Positives = 139/308 (45%), Gaps = 35/308 (11%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGA 167 F V +L+ + ML ++ ++++I Y+ EL S + ++LI+ + S A K ++ Sbjct: 112 FYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGAQKSMLITV 171 Query: 168 FSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM 227 F +L G +Y TG ++ + S + I ++LIL+G F K A PF++ Sbjct: 172 FGGLSMLGGFILLYIMTGSFSIREMIANADEIQNSPLFIPAMILILLGAFTKSAQFPFYI 231 Query: 228 WIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285 W+PD E +P ++A+L AT+ K A + R T +F V + ++ G Sbjct: 232 WLPDAME-APTPVSAYLHSATMVK-AGIYLVARFTPIF-AGSQVWFWTVTLVGLITLFWG 288 Query: 286 SVVAIRQKDLKRLMAYSSIGHAG--------------YALIGFSTGMLGIVAMVRYMVIY 331 S+ A++Q DLK ++A+S++ G Y I A + +++ + Sbjct: 289 SLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAASLHYQGDDSKIYAAAITAAIFHLINH 348 Query: 332 ------LIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR-QDIFLTCALTIFLFSLAGIP 384 L M++G R +I L GL I T AL I S+AG+P Sbjct: 349 ATFKGSLFMIVGIVDHETGTR--------DIRKLGGLMTIMPITFTIAL-IGALSMAGLP 399 Query: 385 PFAGFFGK 392 PF GF K Sbjct: 400 PFNGFLSK 407 >gnl|CDD|183649 PRK12649, PRK12649, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 789 Score = 71.4 bits (175), Expect = 5e-13 Identities = 80/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%) Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171 +L+ + M+ M+ + + I ++ EL S ++LI R S+ A K ++ A Sbjct: 117 LLLFMGSMIGMVFSGNTIQLFIFWELTSITSFMLIGYWRHRPESVYGATKSLLITAGGGL 176 Query: 172 FLLYGISFIYGFTGCTGFSQIATS---LFIGHRSFVLIVGVVLILVGLFFKMALVPFHMW 228 F+ G ++ TG + I + + ++ ++LI +G K A PF++W Sbjct: 177 FMFAGFLLLHVITGTYDIATILQDSELIENIKGHPLFLITLILIFIGAAAKSAQGPFYIW 236 Query: 229 IPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVS---IGSMV 283 +P+ E +P ++AFL AT+ K A + RI P+ SG F+ VS + +MV Sbjct: 237 LPNAME-APTPVSAFLHSATMVK-AGVYLVARIH----PIFSGTEAWFILVSGTGMITMV 290 Query: 284 LGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGM---LGIVAMVRYMVIYLIMMIGF 338 L +A RQ D+K ++AYS+I Y + G++T LG+ A +L+ F Sbjct: 291 LAGFLAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHEPGLGVAA----ATFHLLNHATF 346 Query: 339 FSCILSLRRKDGNN--IQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLL 396 +C+ + + ++I L GL ++ +I ++AGIPP GF K Sbjct: 347 KACLFLVAGIVAHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKEMFY 406 Query: 397 ISAVK 401 ++V+ Sbjct: 407 ETSVE 411 >gnl|CDD|183644 PRK12644, PRK12644, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 965 Score = 70.3 bits (173), Expect = 9e-13 Identities = 76/283 (26%), Positives = 132/283 (46%), Gaps = 23/283 (8%) Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178 M ++++++++ Y+ EL + ++LI + S AAL+ ++ +L GI Sbjct: 119 MFGLVTSDNLLLLYVFWELTTVLSFLLIGHYAERAASRRAALQALLVTTAGGLAMLVGII 178 Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238 + G S++ G + V VVLILVG K A+VPFH W+P +P Sbjct: 179 ILGQAAGTYRLSELLADPPTGP---AVSVAVVLILVGALSKSAIVPFHFWLPGAMA-APT 234 Query: 239 FMTAFL--ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLK 296 ++A+L A + K A + R+ F + P + + + +M+LG A+RQ DLK Sbjct: 235 PVSAYLHAAAMVK-AGIYLVARLAPGF-ADVPVWRPTVLVLGLATMLLGGWRALRQHDLK 292 Query: 297 RLMAYSSIGHAGY--ALIGFST--GMLGIVAMVRYMVIY---LIMMIGFFSCILSLRRKD 349 ++AY ++ G+ L+G T L +AM+ ++ L +++G R Sbjct: 293 LILAYGTVSQLGFLTVLVGIGTRDAALAGLAMLLAHALFKAALFLVVGIIDHSTGTR--- 349 Query: 350 GNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGK 392 +I L+GL R+ L + S+AG+PP GF K Sbjct: 350 -----DIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387 >gnl|CDD|180606 PRK06525, PRK06525, hydrogenase 4 subunit D; Validated. Length = 479 Score = 69.6 bits (171), Expect = 2e-12 Identities = 74/345 (21%), Positives = 150/345 (43%), Gaps = 35/345 (10%) Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171 +L+ + M ++ ++ ++ + E+ + LI+ +S ++ +ALK ++ S Sbjct: 119 LLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISY-YQSPKALRSALKALLITHIGSL 177 Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPD 231 L + ++ TG S ++ L + V + IL + K A +PF+ W+PD Sbjct: 178 GLYLAAATLFLQTGTFALSALS-GLHGSLKYLVFL----GILFAAWGKSAQLPFYSWLPD 232 Query: 232 VYEGSPMFMTAFL---ATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVV 288 E P +A+L + + A + P + G + M + ++ G ++ Sbjct: 233 AMEA-PTPASAYLHAASMVKVGVYIFARAIQSMGPIPHVIGYVGAVMAIVT--LLYGFLM 289 Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLI----------MMIGF 338 + Q+D+KRL+AYS+I GY G S +LG + + Y+ ++ G Sbjct: 290 YLPQQDMKRLLAYSTITQLGYMFFGLSLAILGSRLALEGSIAYIFNHAFAKSLFFLVAGA 349 Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398 S R L G+ ++ + + ++ G+PPF GFF K+ + + Sbjct: 350 LSYSCGTRLLPR--------LRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAA 401 Query: 399 A--VKREFYVL---AIVALLSSVISAYYYLRVISIMWFDQSTECV 438 + E+++L ++ L+ SV S ++LR + F + +E V Sbjct: 402 GFELSVEYWILLPAMVLLLIESVASFAWFLRWFGRVVFGEPSEAV 446 >gnl|CDD|180952 PRK07376, PRK07376, NAD(P)H-quinone oxidoreductase subunit F; Validated. Length = 673 Score = 66.2 bits (162), Expect = 2e-11 Identities = 91/326 (27%), Positives = 153/326 (46%), Gaps = 32/326 (9%) Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVLGAFSSAFLLYG 176 ML ++ + +++ Y+ EL Y+L+ +RK + +AA K FV+ LL G Sbjct: 135 MLGLVISPNLVQIYVFWELVGMCSYLLVGFWYDRKG--AADAAQKAFVVNRVGDFGLLLG 192 Query: 177 ISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFF-----KMALVPFHMWIPD 231 I ++ TG F IA L S + + L+L L F K A P H+W+PD Sbjct: 193 ILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLLCILVFLGPMAKSAQFPLHVWLPD 252 Query: 232 VYEGSPMFMTAFLATIPKFATTMA------LCRITSVFWPMLSGLLPIFMCVSIGSMVLG 285 EG T A I A TM + R+ VF ++ + + LG Sbjct: 253 AMEGP----TPISALI--HAATMVAAGVFLVARMYPVFEQ-FPAVMTVIAWTGAITAFLG 305 Query: 286 SVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG--MLGIVAMVRYMVIYLIMMIGFFSCIL 343 + +A+ Q D+K+ +AYS+I GY ++ G G+ ++ + ++ +G S I Sbjct: 306 ASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIH 365 Query: 344 SLRRKDGNN---IQNISDLAGLSRQDIFLTCALTIFLFSLA--GIPPFAGFFGKYFLLIS 398 + G++ Q++ + GL R+ + +T A+T + LA GIPPFAGF+ K +L + Sbjct: 366 GMEEVVGHDPVLAQDMRLMGGL-RKYMPIT-AITFLIGCLAISGIPPFAGFWSKDEILGA 423 Query: 399 AVKREFYVLAIVALLSSVISAYYYLR 424 A + L V L++ ++A+Y R Sbjct: 424 AFEA-NPALWFVGFLTAGMTAFYMFR 448 >gnl|CDD|180632 PRK06589, PRK06589, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 489 Score = 63.7 bits (155), Expect = 1e-10 Identities = 83/372 (22%), Positives = 167/372 (44%), Gaps = 42/372 (11%) Query: 116 VLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSS-AFLL 174 ++G+L +S+ D+ + ++ EL + + LI R ++ KY + S+ L Sbjct: 127 LIGVLIALSS-DLFTMFVCYELLTISTAFLIGHTRNNISLS-GGYKYLKILMISALLLFL 184 Query: 175 YGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYE 234 + IY TG F ++ LF ++S +L+ L+ + K A+ P H W+P Sbjct: 185 PAVILIYTKTGNLDF--VSGGLFSKNQSIILL----LMFIYGIAKTAIFPVHSWLP---- 234 Query: 235 GSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIF---------------MCVSI 279 A +A P A A+ + + + + LL IF + + I Sbjct: 235 ------AAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAEFNWLIFIPI 288 Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALI-GFSTGMLGIVAMVRYMVIYLIMMIGF 338 S+ S+ A++ ++K+++AYS+I AL+ F + A + ++V + I Sbjct: 289 VSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICL 348 Query: 339 FSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLIS 398 F + S+ + + L G S+ ++ ++I SL GIP F+GF K+ +L++ Sbjct: 349 FYSMGSIYSLKKED--QVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLA 406 Query: 399 AVKREFYVLAIVALL----SSVISAYYYLRVISIMWFDQSTECVVVVAKEMRLFIFGSIL 454 A ++ L+I+ +L SS++SA Y L+++S ++ +E + K + + S++ Sbjct: 407 ASEQNQPWLSIIVMLVVIASSILSALYLLKILSSIYKPSLSE-NSFITKSLPYLMQISVI 465 Query: 455 FVTGYFLIENIL 466 + + Sbjct: 466 TCCCALTLFYFI 477 >gnl|CDD|180602 PRK06521, PRK06521, hydrogenase 4 subunit B; Validated. Length = 667 Score = 62.2 bits (152), Expect = 3e-10 Identities = 50/221 (22%), Positives = 97/221 (43%), Gaps = 14/221 (6%) Query: 105 CFEFPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFV 164 F + + + M+ ++ A+D SF ++ E S + + L+ N + A Y + Sbjct: 116 GFFYNLF----LASMVLVLLADDAFSFLVAWETMSLSSWFLVIANHREAEIRRAGFLYLL 171 Query: 165 LGAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVP 224 + + +L + +G F+ + + F + +L L G K LVP Sbjct: 172 MAHAGALAILLAFGLLARESGSYDFAAMRAA---HLSPFWASLVFLLALFGFGAKAGLVP 228 Query: 225 FHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL----PIFMCVSIG 280 H+W+P + +P ++A ++ +A+ I V + +L + + + Sbjct: 229 LHVWLPRAHPAAPSHVSALMS---GVMLKVAIYGILRVVFDLLGAPGWWWGVLVLALGAI 285 Query: 281 SMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI 321 S VLG + A+ + DLKRL+AYS+I + G +G M+ I Sbjct: 286 SAVLGVLYALAEHDLKRLLAYSTIENIGIIFVGLGLAMVFI 326 >gnl|CDD|183648 PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed. Length = 948 Score = 59.0 bits (144), Expect = 3e-09 Identities = 47/127 (37%), Positives = 70/127 (55%), Gaps = 14/127 (11%) Query: 210 VLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFL--ATIPKFATTMALCRITSVFWPML 267 VLIL+G F K A PFH W+P +P ++A+L AT+ K A L R WP+L Sbjct: 211 VLILLGAFTKSAQFPFHFWLPHAM-AAPTPVSAYLHSATMVK-AGVFLLAR----LWPVL 264 Query: 268 SGLLPIFMCVS---IGSMVLGSVVAIRQKDLKRLMAYSSIGHAGY--ALIGFSTGMLGIV 322 +G F V + +++LG+ A+ Q DLK L+AYS+I H G L+G + L V Sbjct: 265 AGTEEWFWIVGGAGLITLLLGAYFALFQHDLKGLLAYSTISHLGLITLLLGLGS-PLAAV 323 Query: 323 AMVRYMV 329 A + +++ Sbjct: 324 AAIFHII 330 >gnl|CDD|131015 TIGR01960, ndhF3_CO2, NAD(P)H dehydrogenase, subunit NdhF3 family. This family represents a subfamily of NAD(P)H dehydrogenase subunit 5, or ndhF. It is restricted to two paralogs in each completed cyanobacterial genome, in which several subtypes of ndhF are found. Included in this family is NdhF3, shown to play a role in high-affinity CO2 uptake in Synechococcus sp. PCC7002. In all cases, neighboring genes include a paralog of ndhD but do include other NAD(P)H dehydrogenase subunits. Instead, genes related to C02 uptake tend to be found nearby. Length = 606 Score = 55.1 bits (133), Expect = 3e-08 Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 13/315 (4%) Query: 120 LCMISANDMISF-YMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178 L + +D + F Y+ LE+ + + Y+LI + A F+ LL G+ Sbjct: 133 LGGLVLSDSLFFSYVLLEILTLSTYLLIGFWFAQPLVVTGARDAFLTKRVGDLILLMGVV 192 Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILV-GLFFKMALVPFHMWIPDVYEGSP 237 + G + +A + + + L L+ G K A P H+W+ + EG P Sbjct: 193 ALSPLAGSWNYDDLAQWAATANVNPTTATLLGLALIAGPTGKCAQFPLHLWLDEAMEG-P 251 Query: 238 MFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSM--VLGSVVAIRQKDL 295 + ++ L ++ V LS + + ++IGS+ + GS++AI Q D+ Sbjct: 252 NPASILRNSVVVATGAWVLIKLQPVL--TLSPVALTAL-IAIGSVTAIGGSLIAIAQIDI 308 Query: 296 KRLMAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQN 355 KR ++YS + G I G + ++ ++ + I F I S+ Q+ Sbjct: 309 KRALSYSVSAYMGLVFIAVGLGQGDLALLL--LLTHAIAKALLFMSIGSIIWN--TVTQD 364 Query: 356 ISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSS 415 +++L GL + + + L +PP F+ L +++ ++ L+ + Sbjct: 365 LTELGGLWSRRPISGLSFVVGSAGLIAVPPLGSFWAWLKLADGLWATSPWLVGVL-LVVN 423 Query: 416 VISAYYYLRVISIMW 430 +++A+ RV +++ Sbjct: 424 LLTAFNLTRVFRLVF 438 >gnl|CDD|179442 PRK02546, PRK02546, NAD(P)H-quinone oxidoreductase subunit 4; Provisional. Length = 525 Score = 53.9 bits (130), Expect = 8e-08 Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 17/217 (7%) Query: 108 FPVIMLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAM--NRKSVFSIEAALKYFVL 165 F +ML G + + + DM+ F+++ EL+ +Y+L+A+ +K + AA K+ + Sbjct: 117 FYFLMLAMYGGQIAVFAVQDMLLFFLAWELELIPVYLLLAIWGGKKRQY---AATKFILY 173 Query: 166 GAFSSAFLLYGISFIYGFTGCTGFSQIATSLFIGHRSF-----VLIVGVVLILVGLFFKM 220 A SS F+L + + F A + + F +L +LI G+ K+ Sbjct: 174 TAGSSLFILLAALAMAFYGDTPTFDMTA----LAAKDFGLGFQLLCYAGLLIAYGV--KL 227 Query: 221 ALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSI 279 +VP H W+PD + + + LA I AL R+ + P P+ + + + Sbjct: 228 PIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNAGMLPDAHAQFAPLLIVLGV 287 Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFST 316 +++ ++ + Q++LKR +AYSSI H G+ LIG + Sbjct: 288 VNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGS 324 >gnl|CDD|183668 PRK12668, PRK12668, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 581 Score = 49.5 bits (119), Expect = 2e-06 Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 55/310 (17%) Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFT 184 A D+++ ++ EL +F L+ ++ A +Y ++ LL GI Y T Sbjct: 112 AGDLLTLFVFWELMAFTSTFLVWARGTKA-AVRAGFRYLLVHVLGGVLLLAGILLHYAET 170 Query: 185 GCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVY-EGSP---MFM 240 G F IA LIL+G A P H W+PD Y E + +F+ Sbjct: 171 GSFAFGAIAGLGGTA---------AWLILIGFGVNAAFPPLHAWLPDAYPEATVTGSVFL 221 Query: 241 TAF------LATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKD 294 +AF A F T L I + M V G A+ + D Sbjct: 222 SAFTTKTAVYALARAFPGTELLIYIGAA------------MA------VYGVFFALLEND 263 Query: 295 LKRLMAYSSIGHAGYAL----IGFSTGMLGIVAMVRYMVIY---LIMMIGFFSCILSLRR 347 L+RL++Y + GY + IG + + G VA ++Y L M G + + Sbjct: 264 LRRLLSYHIVSQVGYMVAGIGIGTALAINGAVAHAFNHILYKGLLFMSAG--AVLYRTGT 321 Query: 348 KDGNNIQNISDLAGLSRQDIFLTCALTIF-LFSLAGIPPFAGFFGKYFLLISAVKREFYV 406 + ++L GL R + LT + S++ P F+GF K ++ +A + + Sbjct: 322 EKL------TELGGLYRS-MPLTALFCLVGALSISAFPLFSGFVSKSMIISAAGEDHYVW 374 Query: 407 LAIVALLSSV 416 + ++ LL+S Sbjct: 375 VWLLLLLASA 384 >gnl|CDD|183596 PRK12561, PRK12561, NAD(P)H-quinone oxidoreductase subunit 4; Provisional. Length = 504 Score = 49.3 bits (118), Expect = 2e-06 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 25/249 (10%) Query: 125 ANDMISFYMSLELQSFALYVLIAM----NRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180 A D++ F++ EL+ +Y+LI++ R AA K+ + A +S F+L Sbjct: 106 AQDLLLFFLMWELELVPVYLLISIWGGQKRLY-----AATKFILYTALASIFILVA-GLA 159 Query: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVL---ILVGLFFKMALVPFHMWIPDVYEGSP 237 +G T +A +G +S+ L + ++L L+ K+ + P H W+PD + + Sbjct: 160 LALSGDTFTFDLAE---LGAKSYPLALELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEAS 216 Query: 238 MFMTAFLATIPKFATTMALCRITSVFWPMLSG----LLPIFMCVSIGSMVLGSVVAIRQK 293 ++ LA + AL R ML P + + +++ G++ A Q Sbjct: 217 APVSMILAGVLLKMGGYALIRFNV---QMLPDAHVYFAPALAILGVVNIIYGALNAFAQD 273 Query: 294 DLKRLMAYSSIGHAGYALIGF-STGMLGIVAMVRYMVIY-LIMMIGFFSCILSLRRKDGN 351 ++KR +AYSS+ H G+ L+G + LGI + M+ + LI FF ++ R Sbjct: 274 NVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHTL 333 Query: 352 NIQNISDLA 360 +I N+ LA Sbjct: 334 SIPNMGGLA 342 >gnl|CDD|180572 PRK06459, PRK06459, hydrogenase 4 subunit B; Validated. Length = 585 Score = 48.2 bits (115), Expect = 4e-06 Identities = 61/322 (18%), Positives = 139/322 (43%), Gaps = 36/322 (11%) Query: 112 MLMAVLGMLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171 ++ +LGM ++++++ + F E+ + YV IA+ +K+ A + G S+ Sbjct: 78 YILTILGMAIVLTSDNYLLFLAGWEIMTIPSYVAIALTKKNK---RPAFVFMAFGELSTV 134 Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHM--WI 229 +L G ++ + +G T FS + + V ++L G KM ++PF + W+ Sbjct: 135 LILAGFAWAFIISGTTNFSYLPS-----------PVPLILASFGFIIKMGMMPFLVSEWL 183 Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIF-MCVSIGSMVLGSVV 288 P + +P +A L+ + ++T + + G + + + S++ G++ Sbjct: 184 PIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQTIPIGYFGLTILAIGAFSILFGALY 243 Query: 289 AIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG-----------IVAMVRYMVIYLIMMIG 337 A +++K L+A+S+I + G L+ M+ ++ ++ Y + + G Sbjct: 244 AYVSENVKGLLAFSTIENNGAILVALGLYMVTKQLITSIEHFSLITVILYSFAHSVAKTG 303 Query: 338 FFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLI 397 F ++ + I ++ ++ LT+ SL+G+ P G + LL Sbjct: 304 LFLSSGLQEKQSITYSKKI--------RNRWIELGLTLLASSLSGLLPNIGGVASWLLLE 355 Query: 398 SAVKREFYVLAIVALLSSVISA 419 S + + ++++L V A Sbjct: 356 SLFMFAYVLHNVISILFIVTGA 377 >gnl|CDD|180633 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed. Length = 624 Score = 47.9 bits (115), Expect = 6e-06 Identities = 80/289 (27%), Positives = 133/289 (46%), Gaps = 42/289 (14%) Query: 158 AALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQI--ATSLFIGHRSFVLIVGVVLILVG 215 AA+K F++ L GI ++ G + ++ A F G L + +L+ +G Sbjct: 167 AAMKAFIVNRVGDVGLALGIFLLFAEFGSLNYDEVFAAAPQFFGLGWSALTLICLLLFIG 226 Query: 216 LFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITS-VFWPMLSGLLPIF 274 K A P H W+PD EG T A I A TM +T+ V+ +++ + P+F Sbjct: 227 AMGKSAQFPLHTWLPDAMEGP----TPVSALI--HAATM----VTAGVY--LVARMSPLF 274 Query: 275 ----------MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGIVAM 324 V + + + + + Q D+KR++AYS++ GY + LG+ A Sbjct: 275 ELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLA-----LGVGAY 329 Query: 325 VRYMVIYLIMMIGFFSCILSLRRKDGNNI------QNISDLAGLSRQDIFLTCAL-TIFL 377 I+ +M FF +L L G+ I Q+I + GL ++ + +T A I Sbjct: 330 A--AAIFHLMTHAFFKALLFL--GAGSVIHAMHHEQDIRKMGGLRKK-MPVTYATFLIGT 384 Query: 378 FSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYLRVI 426 +L GIPPFAGFF K +L +A L + L+ + ++A+Y R+I Sbjct: 385 LALIGIPPFAGFFSKDEILEAAFANGHINLFVAGLVGAFLTAFYSFRLI 433 >gnl|CDD|168619 PRK06588, PRK06588, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 506 Score = 47.9 bits (114), Expect = 7e-06 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 19/251 (7%) Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGIS 178 ++C+ +A D IS +SLE + ++I ++ I+ A +YF+ FSS +L G++ Sbjct: 62 IICVFAA-DFISMIISLEFMTIFACIIIFCDQ---LKIKPARQYFLTHLFSSGLILIGMT 117 Query: 179 FIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPM 238 + T T F+ + S+ +F L + IL G + + + W+ + Y P+ Sbjct: 118 LLIQTTSNTAFTSLTESVN----NFEL--PAIFILAGCLINASAIFVNGWVVNCY---PI 168 Query: 239 FMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRL 298 ++ + + F T + L I +F SGL I I ++ G V ++ +K+LKRL Sbjct: 169 ASSSGIVYLISFTTKVTLIIILKLF----SGL-EILKFFGISMIIYGLVFSLIEKNLKRL 223 Query: 299 MAYSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISD 358 + Y ++ G+ L S I ++ + I+ G F+ + +D +I+N D Sbjct: 224 ICYLTVSQLGFILAAISINSPNIAYLITSFIFIHILYNGLFALYFAY-IEDEYDIKNYQD 282 Query: 359 LAGLSRQDIFL 369 L I L Sbjct: 283 LQNTQINFILL 293 >gnl|CDD|183666 PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 528 Score = 44.8 bits (107), Expect = 4e-05 Identities = 63/292 (21%), Positives = 119/292 (40%), Gaps = 39/292 (13%) Query: 156 IEAALKYFVLGAFSSAFLLYGISFIYGFTGCTGFSQIAT--SLFIGHRSFVLIVGVVLIL 213 + A L Y + +S+ L G+ IYG TG + +A + +L G L+L Sbjct: 158 VRAGLHYVAINLVASSLFLIGVGLIYGVTGTLNMADLAQRIAQLPAADRALLEAGAALLL 217 Query: 214 VGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLL-- 271 V K A+ P + W+P Y + + A A + K A+ R++++ + +G Sbjct: 218 VVFLIKAAMWPLNFWLPPAYAAASAPVAALFAIMTKVGI-YAILRLSTLLFGPEAGASAG 276 Query: 272 ---PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTG----------- 317 + + ++ G++ + + L+RL AY + +G L G Sbjct: 277 FGQDWLLPGGLATLAFGAIGVLAAQRLRRLAAYLVLVSSGTLLAAIGLGNPAATAAALYY 336 Query: 318 ----MLGIVAMVRYMVIYLIMMI-GFFSCILSLRRKDGNNIQNISDLAGLSRQD------ 366 L A+ +++ L+ G + L++ + + + + G++ Sbjct: 337 LVHSTLAAAAL--FLLADLVERQRGAAADRLAVTPELYDLDEEEEEEVGVAIPATMALLG 394 Query: 367 -IFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVI 417 +F CAL +LAG+PP +GF GK F L+ A+ A L + V+ Sbjct: 395 LLFFICAL-----ALAGLPPLSGFLGK-FALLQALLNPPGAGAAWWLWALVL 440 >gnl|CDD|180955 PRK07390, PRK07390, NAD(P)H-quinone oxidoreductase subunit F; Validated. Length = 613 Score = 38.4 bits (90), Expect = 0.004 Identities = 62/277 (22%), Positives = 111/277 (40%), Gaps = 34/277 (12%) Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLI--VGVVLILVGLFFKMALVPFHMWI 229 LL G+ + G FS +A + + +G+ LI G K A P H+W+ Sbjct: 186 LLLMGVVALSPLAGTLNFSDLAAWAATANLDPLTATLLGLALI-AGPTGKCAQFPLHLWL 244 Query: 230 PDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSM--VLGSV 287 + EG P + ++ L ++ V LS + + + IG++ + S+ Sbjct: 245 DEAMEG-PNPASILRNSVVVATGAWVLIKLQPVL--ALSPVALTVL-IVIGTVTAIGASL 300 Query: 288 VAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI---------VAMVRYMVIYLIMMIGF 338 VAI Q D+KR ++YS+ + G I I +A L M +G Sbjct: 301 VAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKA-----LLFMSVG- 354 Query: 339 FSCILSLRRKDGNNIQNISDLAGL-SRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLI 397 S IL+ Q++++L GL SR L L + P GF+ L Sbjct: 355 -SIILT------TITQDLTELGGLWSRMPATTLAFLVGSA-GLVALLPLGGFWALLRLAD 406 Query: 398 SAVKREFYVLAIVALLSSVISAYYYLRVISIMWFDQS 434 +++ ++ LL + ++A+ RV +++ + Sbjct: 407 GLWAVSPWLVGVL-LLVNALTAFNLTRVFRLVFLGKP 442 >gnl|CDD|181206 PRK08042, PRK08042, formate hydrogenlyase subunit 3; Reviewed. Length = 593 Score = 36.7 bits (85), Expect = 0.012 Identities = 41/198 (20%), Positives = 96/198 (48%), Gaps = 24/198 (12%) Query: 213 LVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRITSVFWPMLSGLLP 272 ++G ++P H W+P + + A +T+ + L I ++ +L G P Sbjct: 187 VIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTV---VMKIGLLGILTL--SLLGGNAP 241 Query: 273 IF-----MCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLGI------ 321 ++ + + + + +G + A+ + +++RL+AY ++ + G L+G G+ GI Sbjct: 242 LWWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPA 301 Query: 322 -VAMVRYMVIYLIMMIGFFSCIL-----SLRRKDGNNIQNISDLAGLSRQDIFLTCALTI 375 +A+ +Y ++ F +L S+ + G+ ++I L G+ ++ ++ A+ + Sbjct: 302 LIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTGH--RDIEKLGGIGKKMPVISIAMLV 359 Query: 376 FLFSLAGIPPFAGFFGKY 393 L ++A +PP GF G++ Sbjct: 360 GLMAMAALPPLNGFAGEW 377 >gnl|CDD|183664 PRK12664, PRK12664, putative monovalent cation/H+ antiporter subunit D; Reviewed. Length = 527 Score = 33.6 bits (77), Expect = 0.11 Identities = 60/325 (18%), Positives = 122/325 (37%), Gaps = 43/325 (13%) Query: 83 LLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAV--LGMLCMISANDMISFYMSLELQSF 140 L++ ++ F +Y+ P F ++ + + + IS++ + + E + Sbjct: 38 LVLFIVLSFSLALIFLYILPIKNMRFSEMLCYLLYYISSIAAISSSSLTLVVIGFEFMAL 97 Query: 141 ALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYG-ISFIYGFTGCTGFSQIATSLFIG 199 + ++IA G AF+ Y + F G G S A + Sbjct: 98 SALMIIAAG--------------CPGGNIGAFIHYACVHFFSGVLLLVGASGQAQNGQYT 143 Query: 200 HRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLATIPKFATTMALCRI 259 +L ++GL A P W+ D Y + F L+ F T +A Sbjct: 144 GYC------KLLFMLGLLINCACFPASSWVVDAYPAASNFGIIVLSL---FTTKVAAL-- 192 Query: 260 TSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGML 319 V SG I + + I + + G + A +++++RL+ Y+ +G G +I Sbjct: 193 --VLLLFFSGE-EILLFLGIITAIYGIIFASLEQNIRRLLCYNVVGQMGLLIIAIGFSGS 249 Query: 320 G------IVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCAL 373 ++ + V+Y ++ +++ RK N++ + GL + + C + Sbjct: 250 SGVAIGILILQIVLSVVYQTLLFMVADSVINRTRK-----FNLNRVGGLFKMSLEAMCCI 304 Query: 374 TIFLFSLAGIPPFAGFFGKYFLLIS 398 I + ++ P AGF K + S Sbjct: 305 -IAILNMGAFPGTAGFVSKSLITHS 328 >gnl|CDD|181264 PRK08168, PRK08168, NADH dehydrogenase subunit L; Provisional. Length = 516 Score = 32.7 bits (75), Expect = 0.23 Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 1/123 (0%) Query: 113 LMAVLGML-CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSA 171 L VL + ++ ++ ++ + S AL+ L+ F+ AA K F+ + Sbjct: 106 LAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFYPDRPFARLAAHKKFIADRLAEL 165 Query: 172 FLLYGISFIYGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPD 231 LL + Y G S + L S L +L+++ + K A +P H W+ Sbjct: 166 LLLAAAALAYLEVGSLSLSALWAHLAAQGASPSLQAAALLLVLAVILKTAQLPVHGWLIQ 225 Query: 232 VYE 234 V E Sbjct: 226 VME 228 >gnl|CDD|129992 TIGR00914, 2A0601, heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873. Length = 1051 Score = 30.5 bits (69), Expect = 1.1 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 17/140 (12%) Query: 180 IYGFTGCTG--FSQIATSLFIGHRS-FVLIVGVVLILVGLFFKMAL----VPFHMWIPDV 232 I+ TG G F +A ++ + +L + V V LF + + + Sbjct: 466 IFTLTGVEGKMFHPMAFTVVLALAGAMILSLTFVPAAVALFIRGKVAEKENRLMRVLKRR 525 Query: 233 YE-------GSPM-FMTAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVL 284 YE P + A +I R+ F P L+ + + I L Sbjct: 526 YEPLLERVLAWPAVVLGAAAVSI--VLVVWIASRVGGEFIPSLNEGDLAYQALRIPGTSL 583 Query: 285 GSVVAIRQKDLKRLMAYSSI 304 VA++Q K + ++ + Sbjct: 584 AQSVAMQQTLEKLIKSFPEV 603 >gnl|CDD|184222 PRK13665, PRK13665, hypothetical protein; Provisional. Length = 316 Score = 29.1 bits (66), Expect = 2.4 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 202 SFVLIVGVVLILVGLFFKMALVPFHMWI 229 LI+ VLI++ L + VP +WI Sbjct: 4 LIGLIIIAVLIIIFLIVFFSFVPVGLWI 31 >gnl|CDD|178238 PLN02631, PLN02631, ferric-chelate reductase. Length = 699 Score = 28.9 bits (64), Expect = 2.9 Identities = 38/174 (21%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 82 ILLMSSIIIFIKMFSCIYV-------KPFSCFEFPVIM--LMAVLGMLCMISANDMISFY 132 ++L++ ++FI + SC+Y+ +P ++ M ++ V+ L +++A ++ Sbjct: 55 LVLLTVPMMFIAVLSCVYLHTQKKPTQPQREWKLKRRMGRVIMVMNPLGIVTATELTFSL 114 Query: 133 MSLELQSFALYVLIAM-------NRKSVFSIEAALKYFVL-----GAFSSAFLLYGI--- 177 + + L +++LY + + N + +A + F L G AFL + + Sbjct: 115 LFVALLAWSLYNYLYLSYHVHLHNDDNAKIWQAKFRAFGLRIGYVGHICWAFLFFPVTRA 174 Query: 178 SFIYGFTGCTGFSQIATSLFIGHRS-FVLIVGVVLILVGLFFKMALVPFHMWIP 230 S I G T S I +++GH S F+ +V V+ L+ L+ W P Sbjct: 175 STILPLVGLTSESSIKYHIWLGHVSNFLFLVHTVVFLIYWAMINKLMETFAWNP 228 >gnl|CDD|179199 PRK00989, truB, tRNA pseudouridine synthase B; Provisional. Length = 230 Score = 28.3 bits (63), Expect = 4.1 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 8/55 (14%) Query: 265 PMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGML 319 G+L + S L IR L +L+ IGHAG L F+TG++ Sbjct: 6 ESKEGILLVDKPQGRTSFSL-----IR--SLTKLIGVKKIGHAG-TLDPFATGVM 52 >gnl|CDD|179229 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional. Length = 679 Score = 27.9 bits (63), Expect = 6.0 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 367 IFLTCALT-IFLFSLAGIPPFAGFFG 391 I L LT IFL +A +PPFA + G Sbjct: 220 ILLA-GLTIIFLLVVATLPPFAAYSG 244 >gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). Length = 439 Score = 27.8 bits (62), Expect = 7.0 Identities = 16/82 (19%), Positives = 37/82 (45%), Gaps = 2/82 (2%) Query: 40 HLVVFPVCLLSIALFFLLIMPYEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIY 99 H FP + A+ FL+ + Y + G+ + Y + + L ++ IF+K + I Sbjct: 317 HTFAFPRMIWYFAMIFLIFLGYPVKLVVGSNLLIYILYVLSSFLNFINVKIFLKEYKEI- 375 Query: 100 VKPFSCFEFPVIMLMAVLGMLC 121 + + ++ +I L+ + + Sbjct: 376 -RDYYKKKWYIIFLLPIYNFVV 396 >gnl|CDD|183993 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional. Length = 410 Score = 27.6 bits (62), Expect = 8.6 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%) Query: 280 GSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG 320 S+ +G +V + + LKR GH LIG TG +G Sbjct: 45 PSLHIGHLVPLMK--LKRFQDA---GHRPVILIGGFTGKIG 80 >gnl|CDD|129116 TIGR00004, TIGR00004, endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested. Length = 124 Score = 27.3 bits (61), Expect = 8.8 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 352 NIQNISDLAGLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYF 394 N++ I + AGLS D+ T T+FL L +G+YF Sbjct: 56 NLKAILEAAGLSLDDVVKT---TVFLTDLNDFAEVNEVYGQYF 95 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.337 0.148 0.446 Gapped Lambda K H 0.267 0.0744 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,905,178 Number of extensions: 547459 Number of successful extensions: 2826 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2584 Number of HSP's successfully gapped: 259 Length of query: 478 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 381 Effective length of database: 3,898,497 Effective search space: 1485327357 Effective search space used: 1485327357 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.7 bits) S2: 59 (26.5 bits)