BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N
[Candidatus Liberibacter asiaticus str. psy62]
(478 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780867|ref|YP_003065280.1| NADH dehydrogenase subunit N [Candidatus Liberibacter asiaticus
str. psy62]
Length = 478
Score = 939 bits (2426), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/478 (100%), Positives = 478/478 (100%)
Query: 1 MSPVSFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMP 60
MSPVSFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMP
Sbjct: 1 MSPVSFINDLRLCIPEIIIAFGILFLLLMGVFSRRKNAFHLVVFPVCLLSIALFFLLIMP 60
Query: 61 YEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGML 120
YEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGML
Sbjct: 61 YEGIGLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGML 120
Query: 121 CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180
CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFI
Sbjct: 121 CMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFI 180
Query: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFM 240
YGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFM
Sbjct: 181 YGFTGCTGFSQIATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFM 240
Query: 241 TAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMA 300
TAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMA
Sbjct: 241 TAFLATIPKFATTMALCRITSVFWPMLSGLLPIFMCVSIGSMVLGSVVAIRQKDLKRLMA 300
Query: 301 YSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLA 360
YSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLA
Sbjct: 301 YSSIGHAGYALIGFSTGMLGIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLA 360
Query: 361 GLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAY 420
GLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAY
Sbjct: 361 GLSRQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAY 420
Query: 421 YYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478
YYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF
Sbjct: 421 YYLRVISIMWFDQSTECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIMKIVMSLF 478
>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
str. psy62]
Length = 499
Score = 75.5 bits (184), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 142/300 (47%), Gaps = 10/300 (3%)
Query: 127 DMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSSAFLLYGISFIYGFTGC 186
DM+ FY+ E ++V+I + S I AA K+F+ F S F+L+ I +
Sbjct: 133 DMLLFYIFFEASLIPMFVIIGVWGGSE-RIYAAYKFFLYTFFGSIFMLFAIVVMCWEKKT 191
Query: 187 TGFSQI-ATSLFIGHRSFVLIVGVVLILVGLFFKMALVPFHMWIPDVYEGSPMFMTAFLA 245
+ + A S F + + + K+ + PFH W+P+ + +P + FLA
Sbjct: 192 SSIIDLYAMSKFPFSIQYWMWIA---FFCSFAIKIPMFPFHTWLPNAHVQAPTAGSVFLA 248
Query: 246 TIPKFATTMALCRITSVFWPMLSGLL-PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSI 304
I R +P+ S P+ +S+ +++ S+V++ Q D+K+L+AYSSI
Sbjct: 249 GIMLKMGGYGCIRFLLPLFPLASQYFAPVIFFLSLIAIIYASLVSMVQTDIKKLIAYSSI 308
Query: 305 GHAGYALIGFSTGML-GIVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLS 363
H GY IG +GM G+ + M+ + ++ F C+ + D + ++I GL
Sbjct: 309 AHMGYVTIGIFSGMKSGVEGAMFQMLSHGLVSSALFFCVGVIY--DRLHTRDIFAYGGLV 366
Query: 364 RQDIFLTCALTIFLFSLAGIPPFAGFFGKYFLLISAVKREFYVLAIVALLSSVISAYYYL 423
+ +F + G+P +GF G+ FL+I +V + +A++A V+SA Y L
Sbjct: 367 HNMPRYAVVMMVFTMANMGLPGTSGFIGE-FLVIMSVFQNSNTVAVLASFGVVLSALYSL 425
>gi|254780865|ref|YP_003065278.1| NADH dehydrogenase subunit L [Candidatus Liberibacter asiaticus
str. psy62]
Length = 666
Score = 53.1 bits (126), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 48/315 (15%)
Query: 119 MLCMISANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAFSS-------- 170
ML ++S+++++ + E A Y+LI +I+A++K FV+
Sbjct: 129 MLVLVSSDNLLQMFFGWEGVGLASYLLIGFWSFKESAIKASMKAFVVNRIGDLGLILAIS 188
Query: 171 --AFLLYGISFIYGFTGCTGFSQIATSLFIG---HRSF------VLIVGVVLILVGLFF- 218
+L + + F F + + +I S+ G HRSF V + I+ LFF
Sbjct: 189 AIIYLFHSVDFDAVFQNASHYWKIGNSVSSGMVSHRSFSFFGIDVHPHDSIAIICLLFFL 248
Query: 219 ----KMALVPFHMWIPDVYEG-SPMFMTAFLATIPKFATTMALCRITSVFW--PMLSGLL 271
K A + H+W+PD EG +P+ AT+ A + R++ +F P + +
Sbjct: 249 GAMGKSAQLLLHVWLPDAMEGPTPVSALIHAATMVT-AGVFLVARMSPLFELSPFVLDCI 307
Query: 272 PIFMCVSIGSMVLGSVVAIRQKDLKRLMAYSSIGHAGYALIGFSTGMLG--IVAMVRYMV 329
+ C+ + + V + Q D+KR++AYS+ GY + G I + +
Sbjct: 308 TVLGCI---TAFFAATVGLVQHDIKRVIAYSTCSQLGYMFVALGCRAYGASIFHLFTHAF 364
Query: 330 IYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSRQDIFLTCALTIFLFSLA----GIPP 385
++ +G S I ++ + Q++ + GL + TC + I + +LA GIP
Sbjct: 365 FKALLFLGSGSVIHAVAGE-----QDMRRMGGLYPH-LPRTCWMMI-VGTLALTGFGIPE 417
Query: 386 ----FAGFFGKYFLL 396
F+GFF K +L
Sbjct: 418 TSIGFSGFFSKDIIL 432
>gi|254780722|ref|YP_003065135.1| pilus assembly protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 187
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 321 IVAMVRYMVIYLIMMIGFFSCILSLRRKDGNNIQNISDLAGLSR 364
I MVRYM + + FFS ++S++ + G N+ LA LSR
Sbjct: 69 ISRMVRYMPL---QEVSFFSTVISVQSQLGGNLSEA--LANLSR 107
>gi|254780896|ref|YP_003065309.1| ABC transporter membrane spanning protein (branched chain amino
acid) [Candidatus Liberibacter asiaticus str. psy62]
Length = 351
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 65 GLGGAYISDRFSYFIKAILLMSSIIIFIKMFSCIYVKPFSCFEFPVIMLMAVLGMLCMIS 124
G G Y++DR YF+ + S+I F + P S + + M +LGM C +S
Sbjct: 146 GKAGIYVADRL-YFLGTTV--RSLIRFFRF-------PSSFVIYEIFMYYVLLGM-CFLS 194
Query: 125 ANDMISFYMSLELQSFALYVLIAMNRKSVFSIEAALKYFVLGAF--SSAFL 173
A+ I ++ S A + I N+K+ FS+ + + L AF SSAF+
Sbjct: 195 AS--IILWLRRTAISNA-WRTIRDNQKAFFSLNTTIIFAKLSAFAVSSAFI 242
>gi|254780427|ref|YP_003064840.1| hypothetical protein CLIBASIA_01560 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 171
Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 425 VISIMWFDQ---STECVVVVAKEMRLFIFGSILFVTGYFLIENILNSSIM 471
V + +W D+ T C VV AK + S L GYF+ ENI+ S++
Sbjct: 17 VENALWGDEIHLRTLCEVVFAKAV------SNLISKGYFVKENIVELSLV 60
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.337 0.148 0.446
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,414
Number of Sequences: 1233
Number of extensions: 11585
Number of successful extensions: 73
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 15
length of query: 478
length of database: 328,796
effective HSP length: 77
effective length of query: 401
effective length of database: 233,855
effective search space: 93775855
effective search space used: 93775855
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 40 (20.0 bits)