HHsearch alignment of GI: 254780868 and MMDB domain: 2p5i_A_

>2p5i_A (A:) BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125}
Probab=96.99  E-value=0.00072  Score=43.26  Aligned_cols=125  Identities=18%  Similarity=0.118  Sum_probs=78.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE------E--CCCEEEECCCCCC
Q ss_conf             3679985316633334132235322400021013779999999999744542102462------1--4650671022112
Q gi|254780868|r   52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIK------W--PNDILVFQRKIAG  123 (252)
Q Consensus        52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iK------W--PNDi~~~~kKi~G  123 (252)
                      |-+.|..=+-.+|+|.+|++++.+.+.... ..--.+.-+++++++.+   |+++...      |  .||+.+++|||+|
T Consensus        90 R~tGGg~V~hd~g~l~~s~i~~~~~~~~~~-~~y~~~~~~i~~~L~~l---Gi~~~~~~~~~~~~~~~~di~~~gkKi~G  165 (288)
T 2p5i_A           90 RNSGGLAVVLDSGILNLSLVLKEEKGFSID-DGYELXYELICSXFQDH---REQIEAREIVGSYCPGSYDLSIDGKKFAG  165 (288)
T ss_dssp             ESSCCCCEEECTTEEEEEEEEECCTTCCHH-HHHHHHHHHHHHHTC------CCCEECCCTTSSSCCTTCEEETTEEEEE
T ss_pred             ECCCCCEEEECCCCEEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHC---CCCEEECCCCCCCCCCCCEEEECCEEEEE
T ss_conf             638996488669963899997367667889-99999999999999974---99607635556657775506778866999


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCC-------------------------CCCCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf             22233232258326765215444446422-------------------------3365321002-367789789998777
Q gi|254780868|r  124 ILIETLNLKNGLQAVVVGIGLNVKHCPVD-------------------------TPYPVTSLQR-EGGCIDLKDIFSLLF  177 (252)
Q Consensus       124 IL~E~~~~~~~~~~~viGiGiNi~~~~~~-------------------------~~~~~tsL~~-~~~~~~~~~l~~~l~  177 (252)
                      .=.-.   ..  ..++.+.-||+..+...                         .+...|++.+ .+..++.+++...+.
T Consensus       166 ~aq~~---~~--~~~l~h~sllv~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~tsl~~~l~~~~~~~~v~~~l~  240 (288)
T 2p5i_A          166 ISQRR---IR--GGVAVQIYLCVSGSGAERAKXIRTFYDKAVAGQPTKFVYPRIKPETXASLSELLGQPHNVSDVLLKAL  240 (288)
T ss_dssp             EEEEE---ET--TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHH
T ss_pred             EEEEE---EC--CEEEEEEEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             76789---88--87999999998579999999972002545303465421454452234669998289999999999999


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780868|r  178 QDVARVLD  185 (252)
Q Consensus       178 ~~l~~~~~  185 (252)
                      ..+...+.
T Consensus       241 ~~~~~~~~  248 (288)
T 2p5i_A          241 XTLQQHGA  248 (288)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHCC
T ss_conf             99998488