Query gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 252
No_of_seqs 159 out of 2775
Neff 8.1
Searched_HMMs 33803
Date Wed Jun 1 19:34:46 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780868.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2cgh_A Biotin ligase; 1.8A {M 100.0 0 0 334.8 16.8 193 8-207 24-221 (221)
2 >1bia_A BIRA bifunctional prot 100.0 0 0 330.5 13.3 193 10-206 11-207 (207)
3 >2eay_A Biotin [acetyl-COA-car 100.0 0 0 322.3 13.1 179 15-205 4-185 (185)
4 >3bfm_A Biotin protein ligase- 100.0 0 0 318.5 12.4 182 8-205 6-191 (191)
5 >2ej9_A Putative biotin ligase 100.0 0 0 309.2 15.9 183 14-207 1-191 (191)
6 >2dxu_A Biotin--[acetyl-COA-ca 100.0 6.5E-37 1.9E-41 249.2 14.5 180 10-205 7-187 (187)
7 >2qhs_A Lipoyltransferase; glo 99.9 3.5E-23 1E-27 163.6 0.2 142 43-190 84-231 (237)
8 >1w66_A Lipoyltransferase; lip 99.4 7.1E-13 2.1E-17 99.4 8.0 167 12-187 12-216 (232)
9 >1vqz_A Lipoate-protein ligase 98.8 4.5E-08 1.3E-12 69.5 9.6 117 63-188 49-183 (209)
10 >1bia_A BIRA bifunctional prot 98.5 3.3E-07 9.9E-12 64.0 6.1 43 207-250 1-43 (50)
11 >2dxu_A Biotin--[acetyl-COA-ca 98.5 1.5E-07 4.6E-12 66.1 4.3 44 207-251 1-44 (48)
12 >3a7r_A Lipoate-protein ligase 98.0 3.6E-05 1.1E-09 51.4 7.7 159 13-185 2-212 (244)
13 >2cgh_A Biotin ligase; 1.8A {M 97.8 3.9E-05 1.2E-09 51.1 5.3 43 208-251 1-44 (47)
14 >2e5a_A Lipoyltransferase 1; l 97.5 9.5E-05 2.8E-09 48.7 4.4 162 13-185 4-214 (246)
15 >2p0l_A Lipoate-protein ligase 97.1 0.0014 4.2E-08 41.4 6.1 127 52-186 87-248 (288)
16 >2p5i_A BH3822 protein; PFAM03 97.0 0.00072 2.1E-08 43.3 3.8 125 52-185 90-248 (288)
17 >2c8m_A Lipoate-protein ligase 97.0 0.0042 1.2E-07 38.5 7.7 139 38-186 41-224 (262)
18 >2eay_A Biotin [acetyl-COA-car 94.3 0.077 2.3E-06 30.6 4.7 43 206-250 1-43 (48)
19 >2ej9_A Putative biotin ligase 93.7 0.15 4.4E-06 28.8 5.3 42 208-251 1-43 (46)
20 >2ddz_A 190AA long hypothetica 92.1 0.32 9.5E-06 26.7 5.2 112 64-188 65-180 (190)
21 >1m5q_A SMAP3, small nuclear r 89.4 0.55 1.6E-05 25.3 4.3 37 202-238 4-41 (67)
22 >3cw1_A Small nuclear ribonucl 88.6 1.3 3.8E-05 23.0 5.7 38 202-239 8-46 (174)
23 >1d3b_B Protein (small nuclear 86.8 1.5 4.5E-05 22.5 5.3 34 205-238 11-45 (91)
24 >1mgq_A SM-like protein; LSM, 86.1 2.2 6.6E-05 21.5 6.8 47 205-251 22-72 (83)
25 >1h64_1 SnRNP SM-like protein; 84.7 2.6 7.6E-05 21.1 6.9 47 205-251 11-61 (75)
26 >1i4k_A Putative snRNP SM-like 84.7 2.6 7.6E-05 21.1 6.9 47 205-251 11-61 (77)
27 >3bfm_A Biotin protein ligase- 84.5 1.9 5.5E-05 22.0 4.8 27 219-246 10-36 (44)
28 >3bw1_A SMX4 protein, U6 snRNA 83.9 2.2 6.4E-05 21.6 4.9 36 203-238 15-51 (96)
29 >3cw1_E Small nuclear ribonucl 83.2 3 8.8E-05 20.7 7.2 38 201-238 23-61 (92)
30 >1th7_A SnRNP-2, small nuclear 82.7 3.1 9.2E-05 20.6 5.7 33 205-237 16-49 (81)
31 >1n9r_A SMF, small nuclear rib 80.5 3.7 0.00011 20.1 6.2 49 203-251 26-79 (93)
32 >1i8f_A Putative snRNP SM-like 80.1 3.6 0.00011 20.2 4.8 34 205-238 18-52 (81)
33 >2fwk_A U6 snRNA-associated SM 80.0 2 6E-05 21.8 3.6 34 205-238 35-69 (121)
34 >2qqr_A JMJC domain-containing 79.2 2.2 6.5E-05 21.5 3.6 48 205-252 64-112 (118)
35 >3cw1_G Small nuclear ribonucl 78.3 4.4 0.00013 19.7 5.0 34 205-238 11-45 (76)
36 >1b34_A Protein (small nuclear 78.1 4.4 0.00013 19.6 5.5 47 203-251 7-59 (119)
37 >2equ_A PHD finger protein 20- 76.4 4.9 0.00015 19.3 5.4 48 204-251 9-57 (74)
38 >1b34_B Protein (small nuclear 76.3 5 0.00015 19.3 5.6 37 202-238 33-70 (118)
39 >1ljo_A Archaeal SM-like prote 76.1 5 0.00015 19.3 7.0 48 204-251 11-63 (77)
40 >2e5p_A Protein PHF1, PHD fing 72.9 6 0.00018 18.8 5.9 49 204-252 9-59 (68)
41 >1d3b_A Protein (small nuclear 72.8 6.1 0.00018 18.8 6.3 34 205-238 12-46 (75)
42 >1ssf_A Transformation related 71.3 6.6 0.00019 18.6 5.6 23 222-244 28-50 (156)
43 >2e5q_A PHD finger protein 19; 69.8 7.1 0.00021 18.4 4.7 48 205-252 8-57 (63)
44 >3cw1_F Small nuclear ribonucl 66.0 8.5 0.00025 17.9 5.6 35 204-238 12-47 (86)
45 >3bdl_A Staphylococcal nucleas 49.8 16 0.00047 16.2 4.2 48 204-251 2-51 (59)
46 >3bcw_A Uncharacterized protei 45.9 12 0.00035 17.0 1.9 22 230-251 76-97 (123)
47 >1o5u_A Novel thermotoga marit 42.4 13 0.00039 16.7 1.7 23 229-251 56-78 (101)
48 >3hks_A EIF-5A-2, eukaryotic t 38.5 24 0.00071 15.1 4.9 23 221-243 5-27 (75)
49 >2eqj_A Metal-response element 38.2 24 0.00071 15.1 5.1 47 204-250 13-61 (66)
50 >3dxv_A Alpha-amino-epsilon-ca 31.7 31 0.00091 14.4 3.8 29 15-43 5-33 (192)
51 >3gju_A Putative aminotransfer 29.6 33 0.00098 14.2 3.2 39 15-53 4-48 (216)
52 >1z7d_A Ornithine aminotransfe 28.9 34 0.001 14.1 3.9 19 16-34 4-22 (185)
53 >3hmu_A Aminotransferase, clas 27.8 36 0.0011 14.0 3.0 20 15-34 5-24 (209)
54 >2oat_A Ornithine aminotransfe 26.4 38 0.0011 13.8 4.0 18 16-33 4-21 (185)
55 >1s0a_A Adenosylmethionine-8-a 25.2 40 0.0012 13.7 2.9 38 15-52 4-46 (205)
56 >3bv0_A Adenosylmethionine-8-a 24.6 41 0.0012 13.6 3.1 21 15-35 4-24 (201)
57 >1ohv_A 4-aminobutyrate aminot 22.8 44 0.0013 13.4 3.9 24 11-34 1-25 (225)
58 >2eh6_A Acoat, acetylornithine 20.3 50 0.0015 13.1 3.2 21 15-35 4-24 (181)
No 1
>>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:1-221)
Probab=100.00 E-value=0 Score=334.83 Aligned_cols=193 Identities=27% Similarity=0.395 Sum_probs=173.5
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-C-CCCCHHCCCH
Q ss_conf 179997049998164856899999997399-997899982446783679985316633334132235-3-2240002101
Q gi|254780868|r 8 CQNPYSFRYEFFDTISSTNDECMKRALSGD-LGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLI-D-SISKDSLTLL 84 (252)
Q Consensus 8 ~~~p~~~~i~~~~~~~STn~~~~~~~~~~~-~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~-~-~~~~~~~~~l 84 (252)
-..+.+++++||++++|||++|++++.++. +++++|+|++||+||||+||.|+||+|++++|+++. + ..+....+.+
T Consensus 24 ~~~~~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~vv~A~~QT~GrGr~gr~W~Sp~g~~~~s~~~~~~~~~~~~~~~~l 103 (221)
T 2cgh_A 24 GAGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQIILSVGVRVVDVPVQAWGWL 103 (221)
T ss_dssp STTCSBCEEEEESCBSCHHHHHHHHHHTTCCCBTEEEEESCBC------------CTTSEEEEEEEEECTTSCGGGTTHH
T ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 13688614899955745999999998668998987999892146888089901789999789853102466755664221
Q ss_pred HHHHHHHHHHHHHHHCCC-CCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 377999999999974454-2102462146506710221122223323225832676521544444642233653210023
Q gi|254780868|r 85 SFAIAVAMRSVIASTLPV-GTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQRE 163 (252)
Q Consensus 85 ~~~~~~ai~~~l~~~~~~-~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~~ 163 (252)
++++|++++++++++.+. +.+++||||||||+++||+||||+|+.. .++|||||||+++.|++.+..+|||+++
T Consensus 104 s~~~~lav~~al~~~~~~~~~~~~iKWPNDI~v~~kKi~GIL~E~~~-----~~~viGiGiNv~~~~~~~~~~atsL~~~ 178 (221)
T 2cgh_A 104 SLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGILAEVAQ-----PFVVLGVGLNVTQAPEEVDPDATSLLDL 178 (221)
T ss_dssp HHHHHHHHHHHHGGGSSSCGGGEEEETTTEEEETTEEEEEEEEEEET-----TEEEEEEEEESCCC--------CCTGGG
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCCEEEEEEEECC-----CEEEEEECCCCCCCCHHHHCCHHHHCCC
T ss_conf 17889999988642013521048986325416630130577443011-----1489982344555852320110000124
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf -67789789998777999999998730355648899999875238
Q gi|254780868|r 164 -GGCIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGI 207 (252)
Q Consensus 164 -~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~ 207 (252)
+..++++++++.++.++...+..|.+ +|+.++++|++++.++
T Consensus 179 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--g~~~~~~~~~~~~~~l 221 (221)
T 2cgh_A 179 GVAAPDRNRIASRLLRELEARIIQWRN--ANPQLAADYRARSLTI 221 (221)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHTBSST
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHC
T ss_conf 444444257899988999999999751--3413599999988667
No 2
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:65-271)
Probab=100.00 E-value=0 Score=330.47 Aligned_cols=193 Identities=26% Similarity=0.376 Sum_probs=173.4
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHCCCHHHHH
Q ss_conf 99970499981648568999999973999978999824467836799853166333-34132235322400021013779
Q gi|254780868|r 10 NPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGN-LYASLLLIDSISKDSLTLLSFAI 88 (252)
Q Consensus 10 ~p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~-l~~S~~~~~~~~~~~~~~l~~~~ 88 (252)
.+.|+++++|++++|||++|++++.++ +++++|+|++||+||||+||+|+||+|+ +++|++++++.+....+.+++++
T Consensus 11 ~~~~~~i~~~~~~~STn~~~~~~~~~~-~~~~~v~A~~QT~GrGr~gr~W~Sp~g~~l~~sl~~~~~~~~~~~~~ls~~~ 89 (207)
T 1bia_A 11 QLDGGSVAVLPVIDSTNQYLLDRIGEL-KSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVI 89 (207)
T ss_dssp TCCSSCEEECSSBSCHHHHHHTTGGGC-CTTCEEEESCBTTC---------CCTTSEEEEEEEEEECC-CCCTHHHHHHH
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 256632899962386799999987538-9998999365777777999830897999789997614677866753344667
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCC-CC
Q ss_conf 999999999744542102462146506710221122223323225832676521544444642--233653210023-67
Q gi|254780868|r 89 AVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPV--DTPYPVTSLQRE-GG 165 (252)
Q Consensus 89 ~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~--~~~~~~tsL~~~-~~ 165 (252)
|+|++++|+++. +.++++|||||||+++||+||||+|.....+...++|||||||+++.+. .....+|||... +.
T Consensus 90 ~~av~~aL~~~~--~~~~~iKWPNDI~~~~~Ki~GIL~E~~~~~~~~~~~viGiGiNv~~~~~~~~~~~~atsL~~~~~~ 167 (207)
T 1bia_A 90 GIVMAEVLRKLG--ADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGI 167 (207)
T ss_dssp HHHHHHHHHHTT--CTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC-----------CCCTTTTTC
T ss_pred HHHHHHHHHHHC--CCEEEEEECCCHHCCCCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHCCCCHHHHHHHCC
T ss_conf 899999987531--543678844411103445552368853114663203565302334678850000021023344224
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 78978999877799999999873035564889999987523
Q gi|254780868|r 166 CIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFACG 206 (252)
Q Consensus 166 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~ 206 (252)
.++++++++.++.++...+..|.+ .+|++++++|++++.+
T Consensus 168 ~~~~~~l~~~l~~~l~~~~~~~~~-~g~~~~~~~~~~~~~~ 207 (207)
T 1bia_A 168 NLDRNTLAAMLIRELRAALELFEQ-EGLAPYLSRWEKLDNF 207 (207)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH-HTTGGGHHHHHHHBTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
T ss_conf 444366677666778999999986-4889999999996413
No 3
>>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* (A:1-185)
Probab=100.00 E-value=0 Score=322.26 Aligned_cols=179 Identities=25% Similarity=0.407 Sum_probs=159.2
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHH
Q ss_conf 49998164856899999997399997899982446783679985316633334132235322400021013779999999
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRS 94 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~ 94 (252)
+++|||+++|||+++++.. ..++++|+|++||+||||+||+|+||+|+||||++++++.. ...+.+++++|+|+++
T Consensus 4 ~i~~~~~~~STn~~~~~~~---~~~~~~v~A~~QT~GrGr~gr~W~Sp~g~l~~S~~~~~~~~-~~~~~l~~~~~~ai~~ 79 (185)
T 2eay_A 4 NLIWLKEVDSTQERLKEWN---VSYGTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNPKEF-ENLLQLPLVLGLSVSE 79 (185)
T ss_dssp EEEEEEEBSCHHHHHHHSC---CCTTEEEEESCBCC------------CCEEEEEEEECTTTC-CCTTHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHCC---CCCCCEEEECCCCCCCCCCCCEEECCCCCCCEEEEEEECCC-CCHHHHHHHHHHHHHH
T ss_conf 6799378734899998549---99996999897576878899861388777517764300133-3201456677776654
Q ss_pred HHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC--CCCCCCCCCCCC-CCCCCHHH
Q ss_conf 999744542102462146506710221122223323225832676521544444642--233653210023-67789789
Q gi|254780868|r 95 VIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPV--DTPYPVTSLQRE-GGCIDLKD 171 (252)
Q Consensus 95 ~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~--~~~~~~tsL~~~-~~~~~~~~ 171 (252)
+++.+. +.++++|||||||+++||+||||+|... .++|||||||+++.++ +.+.++|||..+ +..+++++
T Consensus 80 ~l~~~~--~~~v~iKWPNDi~~~~kKi~GIL~E~~~-----~~~viGiGiNl~~~~~~~~~~~~atsL~~~~~~~~~~~~ 152 (185)
T 2eay_A 80 ALEEIT--EIPFSLKWPNDVYFQEKKVSGVLCELSK-----DKLIVGIGINVNQREIPEEIKDRATTLYEITGKDWDRKE 152 (185)
T ss_dssp HHHHHH--CCCCEEETTTEEEETTEEEEEEEEEEET-----TEEEEEEEEECSCCCCCTTTTTTBCCHHHHHSSCCCHHH
T ss_pred HHHHHC--CCCCCEEECHHHHCCCCCCEEEEEEEEE-----EEEEEECCEEECCCCCCCCCCCCCCCHHHCCCCCCCHHH
T ss_conf 433212--5332101040232234442044100025-----579971110321577873111232202220222354356
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9987779999999987303556488999998752
Q gi|254780868|r 172 IFSLLFQDVARVLDLWKKDTGREEIMNLWRCFAC 205 (252)
Q Consensus 172 l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 205 (252)
+++.++.++..++..|.+ .+|++++++|++++.
T Consensus 153 l~~~l~~~l~~~~~~~~~-~gf~~~~~~~~~~~l 185 (185)
T 2eay_A 153 VLLKVLKRISENLKKFKE-KSFKEFKGKIESKXL 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCGGGTHHHHHHHBT
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
T ss_conf 666667778776554302-677899898999986
No 4
>>3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP} (A:1-191)
Probab=100.00 E-value=0 Score=318.47 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=164.2
Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHH
Q ss_conf 17999704999816485689999999739999789998244678367998531663333413223532240002101377
Q gi|254780868|r 8 CQNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFA 87 (252)
Q Consensus 8 ~~~p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~ 87 (252)
...|.++++++|++++|||++++ ++||+||||+||.|+||+|+||||++++++.+....+.++++
T Consensus 6 ~~~p~~~~l~~~~~v~STn~~~a---------------~~Qt~GrGr~gr~W~Sp~G~l~~S~~l~~~~~~~~~~~l~l~ 70 (191)
T 3bfm_A 6 ITFPPLXTGEAAGPGQDPFDLAC---------------QKAELGVDAGLVVYELGTDVLRAALVLAPEVPLAKAXAXLPV 70 (191)
T ss_dssp CCCCTTCEEEECCTTCCHHHHHH---------------HHHHTTCCTTEEEEEECSSEEEEEEEECCSSCHHHHTTHHHH
T ss_pred CCCCCCCCCEECCCCCCHHHHHH---------------HHHHHCCCCCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 67998753000468899899999---------------999718998748997799979999997878689999689999
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCC--CCCEEEEEECCCCCCCCCCCC-CCCCCCCCCC-
Q ss_conf 999999999974454210246214650671022112222332322--583267652154444464223-3653210023-
Q gi|254780868|r 88 IAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK--NGLQAVVVGIGLNVKHCPVDT-PYPVTSLQRE- 163 (252)
Q Consensus 88 ~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~--~~~~~~viGiGiNi~~~~~~~-~~~~tsL~~~- 163 (252)
+++|++++|+++.+.+.+++||||||||+++||+||||+|+.... ....++|||||||+++.+++. ...+|||.++
T Consensus 71 ~~~Ai~~al~~~~~~~~~v~iKWPNDI~v~~kKi~GIL~E~~~~~~~~~~~~~viGiGiNv~~~~~~~~~~~atsL~~~~ 150 (191)
T 3bfm_A 71 CGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAASTDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEG 150 (191)
T ss_dssp HHHHHHHHHHHHSCTTCCEEECTTSEEEETTEEEEEEEEEESCCCTTSCCSCEEEEEEEESSCCCSSCCCCCSCCGGGTT
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 99999999998679672379866984088880400478973036766664269998875157787754334224666651
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 677897899987779999999987303556488999998752
Q gi|254780868|r 164 GGCIDLKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFAC 205 (252)
Q Consensus 164 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 205 (252)
+..++++++++.++.++..++..|.+ .+|++++++|+++|.
T Consensus 151 ~~~~~~~~l~~~~~~~l~~~~~~~~~-~g~~~~~~~w~~~ah 191 (191)
T 3bfm_A 151 CADVAAPRLLESWARHCLHWINRWDE-GELETIHGEWRGLAH 191 (191)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHBT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHH
T ss_conf 67999999999999999986455540-284789999998663
No 5
>>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} (A:1-191)
Probab=100.00 E-value=0 Score=309.18 Aligned_cols=183 Identities=27% Similarity=0.456 Sum_probs=160.3
Q ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHH
Q ss_conf 04999816485689999999739999789998244678367998531663333413223532240002101377999999
Q gi|254780868|r 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMR 93 (252)
Q Consensus 14 ~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~ 93 (252)
.++++|++++|||++|++++.++ +++++|+|++||+||||+||+|+||+|++|+|++++++. ...+.+++++++|++
T Consensus 1 ~~i~~~~~~~STn~~~~~~~~~~-~~~~~v~a~~QT~GrGR~gr~W~sp~g~l~~S~~~~~~~--~~~~~l~~~~~~av~ 77 (191)
T 2ej9_A 1 MEIIHLSEIDSTNDYAKELAKEG-KRNFIVLADKQNNGKGRWGRVWYSDEGGLYFSMVLDSKL--YNPKVINLLVPICII 77 (191)
T ss_dssp CEEEEESCBSCHHHHHHHHHHTT-CCSEEEEESCBSSCBCGGGCBCCCCTTSEEEEEEEETTS--SCHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCC--CCHHHHHHHHHHHHH
T ss_conf 93799388867899999987658-988699989368887989983228976753012123332--110001235678999
Q ss_pred HHHHHHCCCCCEEEEEECCCEEEE----CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC-CCCCCCCCCCCC-CCCC
Q ss_conf 999974454210246214650671----0221122223323225832676521544444642-233653210023-6778
Q gi|254780868|r 94 SVIASTLPVGTDVKIKWPNDILVF----QRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPV-DTPYPVTSLQRE-GGCI 167 (252)
Q Consensus 94 ~~l~~~~~~~~~~~iKWPNDi~~~----~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~-~~~~~~tsL~~~-~~~~ 167 (252)
++++++. +.++++|||||||++ +||+||||+|... .++|||||||++++++ +...++|||+.+ +..+
T Consensus 78 ~al~~~~--~~~~~iKWPNDi~~~~~~~gkKi~GiL~e~~~-----~~~viGiGiNv~~~~~~~~~~~atsL~~~~~~~~ 150 (191)
T 2ej9_A 78 EVLKNYV--DKELGLKFPNDIMVKVNDNYKKLGGILTELTD-----DYMIIGIGINVNNQIRNEIREIAISLKEITGKEL 150 (191)
T ss_dssp HHHTTTC--CSCEEEETTTEEEEEETTEEEEEEEEEEEECS-----SEEEEEEEECSSSCCCGGGGGTBCCHHHHHSSCC
T ss_pred HHHHHHC--CCCCEEEECCCEEEECCCCCCEEEEEEEEECC-----CCEEEEEEEECCCCCCHHHCCCCCCHHHHHCCCC
T ss_conf 9876402--33210463140898405778668787764126-----6137888762145785010366552777608522
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHCC
Q ss_conf 978999877799999999873035564--8899999875238
Q gi|254780868|r 168 DLKDIFSLLFQDVARVLDLWKKDTGRE--EIMNLWRCFACGI 207 (252)
Q Consensus 168 ~~~~l~~~l~~~l~~~~~~~~~~~~~~--~i~~~~~~~~~~~ 207 (252)
+++++++.++.++..++..|.++ +|+ .++++|++++.++
T Consensus 151 ~~~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l 191 (191)
T 2ej9_A 151 DKVEILSNFLKTFESYLEKLKNK-EIDDYEILKKYKKYSITI 191 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHHHHBSST
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHC
T ss_conf 39999999999999999887744-865577899999978467
No 6
>>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... (A:1-187)
Probab=100.00 E-value=6.5e-37 Score=249.18 Aligned_cols=180 Identities=34% Similarity=0.490 Sum_probs=157.4
Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHH
Q ss_conf 99970499981648568999999973999978999824467836799853166333341322353224000210137799
Q gi|254780868|r 10 NPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIA 89 (252)
Q Consensus 10 ~p~~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~ 89 (252)
...|+.+.++++++|||+++++... .++.+++|+.||+||||+||.|+||+|+|++|++++++.+......++.+++
T Consensus 7 ~~~~~~i~~~~~~~st~~~~~~~~~---~~~~~~~a~~q~~grgrgG~~w~~~~g~l~~s~~~~~~~~~~~~~~l~~~~~ 83 (187)
T 2dxu_A 7 SIIGRRVIYFQEITSTNEFAKTSYL---EEGTVIVADKQTMGHGALNRKWESPEGGLWLSIVLSPKVPQKDLPKIVFLGA 83 (187)
T ss_dssp SSTTSEEEEESSBSCHHHHHHHSCC---CTTCEEEESCBSSCBCGGGCBCCCCTTSEEEEEEECCCSCGGGGGGHHHHHH
T ss_pred HHHCCEEEEECCCCCHHHHHHHHCC---CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 4645859993867888999985099---9995999897678888899847898530224111010143200010025677
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 99999999744542102462146506710221122223323225832676521544444642233653210023-67789
Q gi|254780868|r 90 VAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQRE-GGCID 168 (252)
Q Consensus 90 ~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~~-~~~~~ 168 (252)
++++++++++ +.++.+|||||||+++||+||||+|... ..+++|+|||++.++ +.++|||..+ +..++
T Consensus 84 ~~v~~~l~~~---g~~~~~kwpNDI~v~g~Ki~Gil~~~~~-----~~~v~G~gin~~~~~---~~~~tsL~~~~~~~~~ 152 (187)
T 2dxu_A 84 VGVVETLKEF---SIDGRIKWPNDVLVNYKKIAGVLVEGKG-----DKIVLGIGLNVNNKV---PNGATSMKLELGSEVP 152 (187)
T ss_dssp HHHHHHHHHT---TCCCEEETTTEEEETTEEEEEEEEEECS-----SCEEEEEEECSSSCC---CTTBCCHHHHHTSCCC
T ss_pred HHHHHHHCCC---CEEEEEEECCCEEECCCCCEEEEEEEEE-----EEEEEEECEECCCCC---CCCCCHHHHHHHHHHH
T ss_conf 7788653122---2136887556217715421146653355-----579998430144545---3321025566532001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 7899987779999999987303556488999998752
Q gi|254780868|r 169 LKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFAC 205 (252)
Q Consensus 169 ~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 205 (252)
++++.+.++.++...+..|.++ +++ .+++|.+++.
T Consensus 153 ~~~l~~~l~~~~~~~~~~~~~~-~~~-~~~e~~~~~l 187 (187)
T 2dxu_A 153 LLSVFRSLITNLDRLYLNFLKN-PMD-ILNLVRDNMI 187 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTH-HHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHH
T ss_conf 3467889888888999999851-266-6677777764
No 7
>>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A (A:)
Probab=99.86 E-value=3.5e-23 Score=163.64 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=110.3
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCC
Q ss_conf 99824467836799853166333341322353224000210137799999999997445421024621465067102211
Q gi|254780868|r 43 IVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIA 122 (252)
Q Consensus 43 v~A~~Qt~GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~ 122 (252)
..++.|+.||||+|+.|++++|++++|++++++..... +...++.+++++++++.. ..+.+||||||++++||+|
T Consensus 84 ~~~~~q~~~R~~gG~~~~~~~G~l~~s~i~~~~~~~~~---~~~~~~~~v~~~l~~~g~--~~~~~k~~nDi~~~gkKi~ 158 (237)
T 2qhs_A 84 RENGFELYWVERGGDVTYHGPGQLVGYPIFPVGREVRR---FLRQIEEAIVRVAAGYGI--SAYPTPGYAGVWVGEDKLC 158 (237)
T ss_dssp HHTTCEEEECCSSSSEEEECTTEEEEEEECCCTTCHHH---HHHHHHHHHHHHHHHTTC--CCBCCSSSSSEEETTEEEE
T ss_pred HCCCCEEEEECCCCCEEEECCCCEEEEEEHHHHHHHHH---HHHHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCHHHHH
T ss_conf 04763089923787288975774798872344430789---999999998888765313--3323677644565400498
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCC----CCCC-CCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 222233232258326765215444446----4223-3653210023-677897899987779999999987303
Q gi|254780868|r 123 GILIETLNLKNGLQAVVVGIGLNVKHC----PVDT-PYPVTSLQRE-GGCIDLKDIFSLLFQDVARVLDLWKKD 190 (252)
Q Consensus 123 GIL~E~~~~~~~~~~~viGiGiNi~~~----~~~~-~~~~tsL~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~ 190 (252)
||++|..... ....+.+++++|++.. |++. +..+||+... +..++++++...++..+.+.+..+...
T Consensus 159 G~~~~~~~~~-~~~~~~i~v~~~~~~~~~~~~~~~~~~~~tsl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 231 (237)
T 2qhs_A 159 AIGVAVKEGV-SFHGFALNVNTDLNDFTVIVPCGLKGKGVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVE 231 (237)
T ss_dssp EEEEEEETTE-EEEEEEEESSCCGGGGGGBCCCSSCCSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTCEEC-
T ss_pred HHHHHHHHEE-EECCEEEEECCCCCCCCEEEECCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEC
T ss_conf 9998651205-724479884474015882782788998173648976899999999999999999985993222
No 8
>>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} (A:)
Probab=99.41 E-value=7.1e-13 Score=99.36 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=115.2
Q ss_pred CCEEEEEEECCCCHHHHHHH-----HHHCCC--------CCCEEEEECC-----------CCCCCCCCCCCCCCCCCCCC
Q ss_conf 97049998164856899999-----997399--------9978999824-----------46783679985316633334
Q gi|254780868|r 12 YSFRYEFFDTISSTNDECMK-----RALSGD--------LGNLWIVASC-----------QTAGRGRRDNKWISDKGNLY 67 (252)
Q Consensus 12 ~~~~i~~~~~~~STn~~~~~-----~~~~~~--------~~~~~v~A~~-----------Qt~GrGr~gr~W~s~~G~l~ 67 (252)
..|++......+=....+.+ ...++. .++++++... |+.+|+|.|+.|++++|+++
T Consensus 12 ~~~~~~~~~~~~~~~~~a~d~~ll~~~~~~~~~~l~l~~~~p~~~lG~~q~~~~~~~~~i~v~rR~~GGg~v~~~~g~l~ 91 (232)
T 1w66_A 12 SAIDVRQLGTVDYRTAWQLQRELADARVAGGADTLLLLEHPAVYTAGRRTETHERPIDGTPVVDTDRGGKITWHGPGQLV 91 (232)
T ss_dssp SCCEEEEEEECCHHHHHHHHHHHHHHHHTTCCCEEEEEECCSEEEECTTCCGGGSCTTCCCCEECSSSSSEEEECTTEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCCCCHHEEECCCCCEEEEECCCCEE
T ss_conf 84079888973889999999999999857998859998368845656777654333310001441788517772377466
Q ss_pred CCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEE-EEEECCCEEEE---CCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 132235322400021013779999999999744542102-46214650671---02211222233232258326765215
Q gi|254780868|r 68 ASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDV-KIKWPNDILVF---QRKIAGILIETLNLKNGLQAVVVGIG 143 (252)
Q Consensus 68 ~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~-~iKWPNDi~~~---~kKi~GIL~E~~~~~~~~~~~viGiG 143 (252)
+|++++++.+... ......++-++.++++++. .+. ..+||||++.+ ++||+|+...... . .++.|++
T Consensus 92 ~s~~~~~~~~~~~-~~~~~~~~~~i~~~L~~~g---v~~~~~~~~~~~~~~~~~~~Ki~G~a~~~~~---~--~~~~~~~ 162 (232)
T 1w66_A 92 GYPIIGLAEPLDV-VNYVRRLEESLIQVCADLG---LHAGRVDGRSGVWLPGRPARKVAAIGVRVSR---A--TTLHGFA 162 (232)
T ss_dssp EEEECBBCSSCCH-HHHHHHHHHHHHHHHHHTT---CCCEEETTEEEEEECSSSCEEEEEEEEEEET---T--EEEEEEE
T ss_pred EEEEECHHHCCCH-HHHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCEECCHHHHHHHHHHHHHC---C--EEECCEE
T ss_conf 6555412432344-7788888999999987535---4221225667510001015679999998731---7--1403367
Q ss_pred CCCCCC--------CCCC-CCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 444446--------4223-365321002-3677897899987779999999987
Q gi|254780868|r 144 LNVKHC--------PVDT-PYPVTSLQR-EGGCIDLKDIFSLLFQDVARVLDLW 187 (252)
Q Consensus 144 iNi~~~--------~~~~-~~~~tsL~~-~~~~~~~~~l~~~l~~~l~~~~~~~ 187 (252)
||++.. |+++ +..+||+.. .+..++++++...|+..+.+.+...
T Consensus 163 i~~~~d~~~~~~~~~~~~~~~~~tsl~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 216 (232)
T 1w66_A 163 LNCDCDLAAFTAIVPCGISDAAVTSLSAELGRTVTVDEVRATVAAAVCAALDGV 216 (232)
T ss_dssp EESSCCCGGGGGSCGGGCSSSEECCHHHHHTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHCCEEECCCCCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 853575221783775799899354406986899989999999999999986562
No 9
>>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251)
Probab=98.80 E-value=4.5e-08 Score=69.45 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=81.2
Q ss_pred CCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 33334132235322400021013779999999999744542102462146506710221122223323225832676521
Q gi|254780868|r 63 KGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGI 142 (252)
Q Consensus 63 ~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGi 142 (252)
.|+|.+|++++.+...... -..++-.++++++.+ |+++.++|||||.+++|||+|....... ........|
T Consensus 49 ~GnLnySli~p~~~~~~~~---y~~l~~~I~~aL~~l---GI~a~~~g~nDI~i~gkKIsGsAq~~~~---~~~l~HgTI 119 (209)
T 1vqz_A 49 NNNLNYTIISKEDENKAFD---FKSFSTPVINTLAQL---GVKAEFTGRNDLEIDGKKFCGNAQAYIN---GRIXHHGCL 119 (209)
T ss_dssp CTEEEEEEEEECCTTCCCS---HHHHHHHHHHHHHHT---TCCEEEETTTEEEETTEEEEEEEEEEET---TEEEEEEEE
T ss_pred CCCEEEEEEECCCCCCHHH---HHHHHHHHHHHHHHH---CCCEEECCCCCCEECCCEEEEEEEEEEC---CEEEEEEEE
T ss_conf 6967999997365442200---999999999999973---4553871478740068188653343408---479998688
Q ss_pred CCCCC---------CCCCC--------CCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 54444---------46422--------33653210023-6778978999877799999999873
Q gi|254780868|r 143 GLNVK---------HCPVD--------TPYPVTSLQRE-GGCIDLKDIFSLLFQDVARVLDLWK 188 (252)
Q Consensus 143 GiNi~---------~~~~~--------~~~~~tsL~~~-~~~~~~~~l~~~l~~~l~~~~~~~~ 188 (252)
.++.+ .+++. .+..+|+|.+. +..++.+++...|++.+...+....
T Consensus 120 lvd~D~~~l~~~L~~~~ek~~~k~~~s~~~~vtsL~e~lg~~is~e~l~~aL~e~~~~~~~~~~ 183 (209)
T 1vqz_A 120 LFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYXKKEYPEXT 183 (209)
T ss_dssp ESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGGTCSSCCCHHHHHHHHHHHHHHHCTTCE
T ss_pred EECCCHHHHHHHHCCCCCCHHHCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 6069999999870899402022155534655421897748999999999999999998638775
No 10
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:272-321)
Probab=98.47 E-value=3.3e-07 Score=64.02 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=40.8
Q ss_pred CCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEE
Q ss_conf 89779999799389999998769874899969998999996311
Q gi|254780868|r 207 IGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 (252)
Q Consensus 207 ~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI 250 (252)
+||.|++..++++++|++.|||++|+|+|++++| ++.|+||||
T Consensus 1 lGk~V~i~~~~~~~~G~a~gId~~G~Llv~~~~g-~~~~~sGEV 43 (50)
T 1bia_A 1 INRPVKLIIGDKEIFGISRGIDKQGALLLEQDGI-IKPWMGGEI 43 (50)
T ss_dssp TTSEEEEEETTEEEEEEEEEECTTSCEEEEETTE-EEEESSCEE
T ss_pred CCCEEEEEECCEEEEEEEEEECCCCEEEEEECCE-EEEEEEEEE
T ss_conf 4986999979979999999999898299999991-999998899
No 11
>>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... (A:188-235)
Probab=98.46 E-value=1.5e-07 Score=66.11 Aligned_cols=44 Identities=34% Similarity=0.586 Sum_probs=40.1
Q ss_pred CCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 897799997993899999987698748999699989999963110
Q gi|254780868|r 207 IGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 207 ~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
+||+|++ ..+++++|++.|||++|+|+|+++||+++.|+||||.
T Consensus 1 LG~~V~v-~~~~~~~G~a~gId~~G~LiV~~~dG~~~~i~sGEVs 44 (48)
T 2dxu_A 1 LGVRVKI-LGDGSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDVS 44 (48)
T ss_dssp CSSEEEC-----CCEEEEEEECTTSCEEEECTTSCEEEECCSSCC
T ss_pred CCCEEEE-ECCCEEEEEEEEECCCCEEEEEECCCCEEEEEEEEEE
T ss_conf 4958999-3898899999999999869999899979999987789
No 12
>>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* (A:1-244)
Probab=97.97 E-value=3.6e-05 Score=51.37 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=108.3
Q ss_pred CEEEEEEECCCCHHHHHHHHH-----HCCC-------CCCEEEEECCCCC-----------------CCCCCCCCCCCCC
Q ss_conf 704999816485689999999-----7399-------9978999824467-----------------8367998531663
Q gi|254780868|r 13 SFRYEFFDTISSTNDECMKRA-----LSGD-------LGNLWIVASCQTA-----------------GRGRRDNKWISDK 63 (252)
Q Consensus 13 ~~~i~~~~~~~STn~~~~~~~-----~~~~-------~~~~~v~A~~Qt~-----------------GrGr~gr~W~s~~ 63 (252)
.|++.....++=-...+.+.. ..+. ..+++++-.+|.. =|.|.|...+..+
T Consensus 2 ~~~~i~~~~~~~~~~la~~e~ll~~~~~~~~~l~~~~~~p~v~iG~~q~~~~ev~~~~~~~~gi~vvrR~tGGgav~hd~ 81 (244)
T 3a7r_A 2 TLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDL 81 (244)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHCCTTCEEEEEECCSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECT
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCEEEEECCCCEEEEECC
T ss_conf 68999869999899999999999548889948999706998998998985666588999875982999758963789669
Q ss_pred CCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEE----EECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 3334132235322400021013779999999999744542102462146506----710221122223323225832676
Q gi|254780868|r 64 GNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDIL----VFQRKIAGILIETLNLKNGLQAVV 139 (252)
Q Consensus 64 G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~----~~~kKi~GIL~E~~~~~~~~~~~v 139 (252)
|++.+|++++.+... .....-.+.++++++ ++++.++-.||+. +++||++|+=.... . ..++
T Consensus 82 g~l~~~~i~~~~~~~------~~~~~~~i~~~l~~l---Gi~a~~~~~~~~~~~~~~~grKi~g~a~~~~---~--~~~~ 147 (244)
T 3a7r_A 82 GNTCFTFMAGKPEYD------KTISTSIVLNALNAL---GVSAEASGRNDLVVKTVEGDRKVSGSAYRET---K--DRGF 147 (244)
T ss_dssp TEEEEEEEEETTTCC------HHHHHHHHHHHHHHT---TCCEEEETTTEEEECCTTSCEEEEEEEEEEC---S--SEEE
T ss_pred CCEEEEEEECCCCCC------HHHHHHHHHHHHHHC---CCCEEECCCCCEEECCCCCCCEEEEEEEEEE---C--CEEE
T ss_conf 988999985774006------999999999999973---9731576877702235667737976789999---9--9999
Q ss_pred EECCCCCCCCC-----------CCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 52154444464-----------223--------36532100236778978999877799999999
Q gi|254780868|r 140 VGIGLNVKHCP-----------VDT--------PYPVTSLQREGGCIDLKDIFSLLFQDVARVLD 185 (252)
Q Consensus 140 iGiGiNi~~~~-----------~~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~~~~ 185 (252)
.|..||++... +.+ +...|+|.+.+..++.+++...+...+.+.+.
T Consensus 148 ~~~sll~~~d~~~~~~~l~~~~~~l~~~~~~s~~~~~tsl~~~~~~~~~~~~~~~l~~~~~~~~~ 212 (244)
T 3a7r_A 148 HHGTLLLNADLSRLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITEAFFAHYG 212 (244)
T ss_dssp EEEEEESSCCHHHHHHHTSCCCCEEEECSCCCCCCCBCCGGGTCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCHHHHHHHCCCCCHHHHHCCCCCHHHCCEEHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 97798607998999986399914334405575463351299957999999999999999999845
No 13
>>2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:222-268)
Probab=97.79 E-value=3.9e-05 Score=51.13 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=38.1
Q ss_pred CCEEEEEECCE-EEEEEEEEECCCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 97799997993-899999987698748999699989999963110
Q gi|254780868|r 208 GDLITIKLSYG-SILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 208 gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
||.|++..+++ +++|++.+||++|+|+|+++. ..+.+++|||-
T Consensus 1 Gr~VRv~lpgg~~l~G~A~diD~~G~LvV~~~g-~~~~v~AGDV~ 44 (47)
T 2cgh_A 1 GSRVRVELPGGQDVVGIARDIDDQGRLCLDVGG-RTVVVSAGDVV 44 (47)
T ss_dssp TSEEEEEETTTEEEEEEEEEECTTSCEEEEETT-EEEEECSSCCE
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCEEEEEECC-CEEEEEECCEE
T ss_conf 997999978994999999999989809999999-49999952689
No 14
>>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} (A:1-246)
Probab=97.54 E-value=9.5e-05 Score=48.72 Aligned_cols=162 Identities=12% Similarity=-0.016 Sum_probs=98.9
Q ss_pred CEEEEEEECCCCHHHHHHHHH--HC--CC---------CCCEEEEECCCCC-----------------CCCCCCCCCCCC
Q ss_conf 704999816485689999999--73--99---------9978999824467-----------------836799853166
Q gi|254780868|r 13 SFRYEFFDTISSTNDECMKRA--LS--GD---------LGNLWIVASCQTA-----------------GRGRRDNKWISD 62 (252)
Q Consensus 13 ~~~i~~~~~~~STn~~~~~~~--~~--~~---------~~~~~v~A~~Qt~-----------------GrGr~gr~W~s~ 62 (252)
.|++.....++=....+.+.. .. .. .++++++-..|.. =|.|.|..-+-.
T Consensus 4 ~~~~i~~~~~~~~~~la~~e~l~~~~~~~~~~~l~l~~~~p~v~iG~~q~~~~e~~~~~~~~~gi~vvrR~tGGg~V~hd 83 (246)
T 2e5a_A 4 SGLILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTVYHD 83 (246)
T ss_dssp -CEEEEESCCCHHHHHHHHHHHHHHCCCTTCCEEEEECCSSEEEECTTCCHHHHSCHHHHHTTTCEEEECSSCSCCEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEEC
T ss_conf 22899917999889999999999607888995899971899799899898567619999987699189983698559843
Q ss_pred CCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 33334132235322400021013779999999999744542102462146506710221122223323225832676521
Q gi|254780868|r 63 KGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGI 142 (252)
Q Consensus 63 ~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGi 142 (252)
+|++.+|++++.+... ....--.++-++.++++.+ |++.. .=|||+.+++|||||+-.-.. + ..++.|.
T Consensus 84 ~g~l~~s~i~~~~~~~--~~~~y~~~~~~i~~~l~~l---Gv~~~-~~~~~i~v~~~Ki~g~a~~~~---~--~~~~~~~ 152 (246)
T 2e5a_A 84 MGNINLTFFTTKKKYD--RMENLKLVVRALKAVHPHL---DVQAT-KRFDLLLDGQFKISGTASKIG---R--NAAYHHC 152 (246)
T ss_dssp TTEEEEEEEECGGGCC--HHHHHHHHHHHHHHHSTTC---CEEEC-TTSCEEETTTEEEECEEEEEC---S--SCEEEEE
T ss_pred CCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHHHCC---EEEEE-CCCCEEECCCEEEEEEEEEEE---C--CEEEEEE
T ss_conf 9968999975467689--8999999999999975423---26884-578648768649988889988---9--9899986
Q ss_pred CCCCCCCCC-----------CC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 544444642-----------23--------36532100236778978999877799999999
Q gi|254780868|r 143 GLNVKHCPV-----------DT--------PYPVTSLQREGGCIDLKDIFSLLFQDVARVLD 185 (252)
Q Consensus 143 GiNi~~~~~-----------~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~~~~ 185 (252)
.+|++..++ .+ +...|++.+.+..++.+++...+...+.+.+.
T Consensus 153 sl~~~~d~~~~~~~l~~~~~~~~~~~~~s~~~~vt~l~~~~~~~~~~~~~~~l~~~~~~~~~ 214 (246)
T 2e5a_A 153 TLLCGTDGTFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQ 214 (246)
T ss_dssp EEESSCCHHHHHHHTSCCCCSEEECSCCCCCCCBCCHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCHHHHHHHCCCCHHHHHHHCCCCCHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 89843888999987189915645421345076404788857999999999999999999848
No 15
>>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, structural genomics, protein structure initiative, PSI-2; 2.04A {Streptococcus agalactiae COH1} (A:)
Probab=97.09 E-value=0.0014 Score=41.43 Aligned_cols=127 Identities=18% Similarity=0.139 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CHHCCCHHHHHHHHHHHHHHHHCCCCCEEEE------EE--CCCEEEECCCCC
Q ss_conf 36799853166333341322353224-0002101377999999999974454210246------21--465067102211
Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSIS-KDSLTLLSFAIAVAMRSVIASTLPVGTDVKI------KW--PNDILVFQRKIA 122 (252)
Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~-~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~i------KW--PNDi~~~~kKi~ 122 (252)
|.+.|..=+-.+|++.+|++++.... ......+--.++-.+.++++.++ +++.. =| .|||.+++|||+
T Consensus 87 R~tGGgaV~hd~G~l~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~L~~lG---i~a~~~~~~~~~~~~~~di~~~g~KI~ 163 (288)
T 2p0l_A 87 RNFGGLAVVADEGILNFSLVIPDVFERKLSISDGYLIXVDFIRSIFSDFY---QPIEHFEVETSYCPGKFDLSINGKKFA 163 (288)
T ss_dssp CTTCCSCEEESTTEEEEEEEEESCC---CCHHHHHHHHHHHHHHHTTTSC---SCCEECCCTTSSSCCTTCEEETTEEEE
T ss_pred ECCCCCEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCEEECCEEEE
T ss_conf 64898648977995699999626654678989999999999999999719---751773255665788665788888789
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCCCCCCC-------------------------CCCCCCCCC-CCCCCCHHHHHHHH
Q ss_conf 2222332322583267652154444464223-------------------------365321002-36778978999877
Q gi|254780868|r 123 GILIETLNLKNGLQAVVVGIGLNVKHCPVDT-------------------------PYPVTSLQR-EGGCIDLKDIFSLL 176 (252)
Q Consensus 123 GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~-------------------------~~~~tsL~~-~~~~~~~~~l~~~l 176 (252)
|.=.-. .. ..++.|.-||+....... +...|++.+ .+...+++++...+
T Consensus 164 G~aq~~---~~--~~~l~~gsl~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~~~l 238 (288)
T 2p0l_A 164 GLAQRR---IK--NGIAVSIYLSVCGDQKGRSQXISDFYKIGLGDTGSPIAYPNVDPEIXANLSDLLDCPXTVEDVIDRX 238 (288)
T ss_dssp EEEEEE---ET--TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTTCCSSCCCCCCTTSBCCHHHHTTCCCCHHHHHHHH
T ss_pred EEEEEE---EC--CEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEHHHHCCCCCCHHHHHHHH
T ss_conf 989998---38--9399999999978878988999887764025445543467755555221999739999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 7999999998
Q gi|254780868|r 177 FQDVARVLDL 186 (252)
Q Consensus 177 ~~~l~~~~~~ 186 (252)
...|...+..
T Consensus 239 ~~~~~~~~~~ 248 (288)
T 2p0l_A 239 LISLKQVGFN 248 (288)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHCCC
T ss_conf 9999986587
No 16
>>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} (A:)
Probab=96.99 E-value=0.00072 Score=43.26 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=78.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE------E--CCCEEEECCCCCC
Q ss_conf 3679985316633334132235322400021013779999999999744542102462------1--4650671022112
Q gi|254780868|r 52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIK------W--PNDILVFQRKIAG 123 (252)
Q Consensus 52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iK------W--PNDi~~~~kKi~G 123 (252)
|-+.|..=+-.+|+|.+|++++.+.+.... ..--.+.-+++++++.+ |+++... | .||+.+++|||+|
T Consensus 90 R~tGGg~V~hd~g~l~~s~i~~~~~~~~~~-~~y~~~~~~i~~~L~~l---Gi~~~~~~~~~~~~~~~~di~~~gkKi~G 165 (288)
T 2p5i_A 90 RNSGGLAVVLDSGILNLSLVLKEEKGFSID-DGYELXYELICSXFQDH---REQIEAREIVGSYCPGSYDLSIDGKKFAG 165 (288)
T ss_dssp ESSCCCCEEECTTEEEEEEEEECCTTCCHH-HHHHHHHHHHHHHTC------CCCEECCCTTSSSCCTTCEEETTEEEEE
T ss_pred ECCCCCEEEECCCCEEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHC---CCCEEECCCCCCCCCCCCEEEECCEEEEE
T ss_conf 638996488669963899997367667889-99999999999999974---99607635556657775506778866999
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCC-------------------------CCCCCCCCCC-CCCCCCHHHHHHHHH
Q ss_conf 22233232258326765215444446422-------------------------3365321002-367789789998777
Q gi|254780868|r 124 ILIETLNLKNGLQAVVVGIGLNVKHCPVD-------------------------TPYPVTSLQR-EGGCIDLKDIFSLLF 177 (252)
Q Consensus 124 IL~E~~~~~~~~~~~viGiGiNi~~~~~~-------------------------~~~~~tsL~~-~~~~~~~~~l~~~l~ 177 (252)
.=.-. .. ..++.+.-||+..+... .+...|++.+ .+..++.+++...+.
T Consensus 166 ~aq~~---~~--~~~l~h~sllv~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~tsl~~~l~~~~~~~~v~~~l~ 240 (288)
T 2p5i_A 166 ISQRR---IR--GGVAVQIYLCVSGSGAERAKXIRTFYDKAVAGQPTKFVYPRIKPETXASLSELLGQPHNVSDVLLKAL 240 (288)
T ss_dssp EEEEE---ET--TEEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHH
T ss_pred EEEEE---EC--CEEEEEEEEEEECCHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHH
T ss_conf 76789---88--87999999998579999999972002545303465421454452234669998289999999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780868|r 178 QDVARVLD 185 (252)
Q Consensus 178 ~~l~~~~~ 185 (252)
..+...+.
T Consensus 241 ~~~~~~~~ 248 (288)
T 2p5i_A 241 XTLQQHGA 248 (288)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
T ss_conf 99998488
No 17
>>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} (A:)
Probab=96.98 E-value=0.0042 Score=38.48 Aligned_cols=139 Identities=16% Similarity=0.076 Sum_probs=85.0
Q ss_pred CCCEEEEECCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf 9978999824467-----------------83679985316633334132235322400021013779999999999744
Q gi|254780868|r 38 LGNLWIVASCQTA-----------------GRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTL 100 (252)
Q Consensus 38 ~~~~~v~A~~Qt~-----------------GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~ 100 (252)
.++++++-..|.. =|.+.|..=+-.+|+|.+|++++.+... ....--.++-++.++|+++
T Consensus 41 ~~p~v~iG~~q~~~~ev~~~~~~~~~i~vvrR~tGGg~v~hd~G~l~~s~i~~~~~~~--~~~~y~~~~~~i~~~l~~~- 117 (262)
T 2c8m_A 41 HDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRYTGGGAVYHDLGDLNFSVVRSSDDMD--ITSMFRTMNEAVVNSLRIL- 117 (262)
T ss_dssp CSSEEEECTTCCHHHHSCHHHHHHTTCEEEECSSCSCCEEECTTEEEEEEEEECSSCC--HHHHHHHHHHHHHHHHHHT-
T ss_pred CCCEEEECCCCCHHHHHCHHHHHHCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCC--HHHHHHHHHHHHHHHHHHC-
T ss_conf 7997998978980355498999867983899836996499889981899997058999--9999999999999999973-
Q ss_pred CCCCEEEEEE----------CCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC-----------CC-CCCC
Q ss_conf 5421024621----------465067102211222233232258326765215444446422-----------33-6532
Q gi|254780868|r 101 PVGTDVKIKW----------PNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVD-----------TP-YPVT 158 (252)
Q Consensus 101 ~~~~~~~iKW----------PNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~-----------~~-~~~t 158 (252)
|.+....- +||+.+++|||+|.=.-.. . ..++.+.-||++...+. +. ...+
T Consensus 118 --Gi~~~~~~~~~~~~~~~~~~di~~~gkKi~G~a~~~~---~--~~~l~~~tll~~~d~~~~~~~l~~~~~~~~~~~~~ 190 (262)
T 2c8m_A 118 --GLDARPGELNDVSIPVNKKTDIMAGEKKIMGAAGAMR---K--GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAK 190 (262)
T ss_dssp --TCCCEECCBCCTTSSSSBTTSEEETTEEEEEEEEEEE---T--TEEEEEEEEESSCCHHHHHHHTC------------
T ss_pred --CCEEEECCCCCEEEECCCCCCCCCCCEEEEEEEEEEE---C--CEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCC
T ss_conf --9515885858807845677765568706875302543---8--88999866114799999998758896444222344
Q ss_pred CCCC------CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1002------367789789998777999999998
Q gi|254780868|r 159 SLQR------EGGCIDLKDIFSLLFQDVARVLDL 186 (252)
Q Consensus 159 sL~~------~~~~~~~~~l~~~l~~~l~~~~~~ 186 (252)
++.. ....++++++...+.+.+.+.+..
T Consensus 191 s~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 224 (262)
T 2c8m_A 191 STRERVANVTDFVDVSIDEVRNALIRGFSETLHI 224 (262)
T ss_dssp ---CCBCCGGGTSCCCHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3465333687718989999999999999998589
No 18
>>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* (A:186-233)
Probab=94.26 E-value=0.077 Score=30.61 Aligned_cols=43 Identities=28% Similarity=0.659 Sum_probs=35.6
Q ss_pred CCCCEEEEEECCEEEEEEEEEECCCCCEEEECCCCCEEEEEEEEE
Q ss_conf 389779999799389999998769874899969998999996311
Q gi|254780868|r 206 GIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 (252)
Q Consensus 206 ~~gk~V~i~~~~~~~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI 250 (252)
++|..|++ .+.+.++|+.+|+.+.|..++.++.| ++.|.|||.
T Consensus 1 ylgeevkl-lgegkitgklvglsekggalilteeg-ikeilsgef 43 (48)
T 2eay_A 1 YLGEEVKL-LGEGKITGKLVGLSEKGGALILTEEG-IKEILSGEF 43 (48)
T ss_dssp TTTSEEEE-TTEEEEEEEEEEECTTSCEEEEETTE-EEEECSCCE
T ss_pred HCCCEEEE-CCCCEEEEEEEEECCCCCEEEEECCC-EEEEEEEEE
T ss_conf 38977999-87998999999998999889997998-799998889
No 19
>>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} (A:192-237)
Probab=93.67 E-value=0.15 Score=28.80 Aligned_cols=42 Identities=31% Similarity=0.482 Sum_probs=35.9
Q ss_pred CCEEEEEECCEE-EEEEEEEECCCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 977999979938-99999987698748999699989999963110
Q gi|254780868|r 208 GDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 208 gk~V~i~~~~~~-~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
||.|++..++++ +.|++-+||-|| +.+-++.| +++|.+|+++
T Consensus 1 Gr~VKi~L~Nne~v~GkVyDIDfdG-I~LgTE~G-iekiP~Gic~ 43 (46)
T 2ej9_A 1 GKQVKILLSNNEIITGKVYDIDFDG-IVLGTEKG-IERIPSGICI 43 (46)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSE-EEEEETTE-EEEEEGGGEE
T ss_pred CCEEEEEECCCEEEEEEEEEECCCC-CEEEECCC-EEEEEEECEE
T ss_conf 9979999789909999999999898-39997998-7999851689
No 20
>>2ddz_A 190AA long hypothetical protein; hexamer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.24A {Pyrococcus horikoshii OT3} (A:)
Probab=92.10 E-value=0.32 Score=26.73 Aligned_cols=112 Identities=18% Similarity=0.212 Sum_probs=62.7
Q ss_pred CCCCCCCCC-CCCC-CCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 333413223-5322-40002101377999999999974454210246214650671022112222332322583267652
Q gi|254780868|r 64 GNLYASLLL-IDSI-SKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVG 141 (252)
Q Consensus 64 G~l~~S~~~-~~~~-~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viG 141 (252)
++-++.|++ .++. ........+-+...-+.+.|+.. +.++. +==-|||+++||+.=-..- ......-|-
T Consensus 65 S~dmlhfIvEhFD~~dl~~a~~rQRLlv~i~kEvl~~~---gi~~~-R~GDDLy~~~kKLSVSIAt-----~s~vS~kIH 135 (190)
T 2ddz_A 65 GDDMVHYILELFWHPDILLASSLQKLLIARLVELLWNY---GIEAS-RRGDDIYVNGRKLSISIAT-----VSPVSIKIH 135 (190)
T ss_dssp EEEEEEEEEEECSCCCHHHHHHHHHHHHHHHHHHHHTT---TCCEE-EETTEEEETTEECEEEEEE-----ECSSCEEEE
T ss_pred CHHHEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHC---CCCEE-ECCCEEEECCCEEEEEEEE-----CCCCCEEEE
T ss_conf 62100466642798667899999999999999999974---98448-7078068849778999996-----278715899
Q ss_pred CCCCCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15444446--422336532100236778978999877799999999873
Q gi|254780868|r 142 IGLNVKHC--PVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWK 188 (252)
Q Consensus 142 iGiNi~~~--~~~~~~~~tsL~~~~~~~~~~~l~~~l~~~l~~~~~~~~ 188 (252)
+|||+... |++ -++.+|.+.| ++..++...+...+..-++..+
T Consensus 136 ~GiNV~~~g~P~~--V~~igL~dlg--id~~e~~~~i~~~y~~E~~~Ie 180 (190)
T 2ddz_A 136 IGLNVKTVGVPPG--VDAIGLEELG--IDPTEFMERSAKALVEEIEKVR 180 (190)
T ss_dssp EEEESCCSSCCSS--SCBCCHHHHT--CCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCC--CCEECHHHCC--CCHHHHHHHHHHHHHHHHHHHH
T ss_conf 8788760564787--5141233227--7899999999999999988899
No 21
>>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} (A:1-67)
Probab=89.38 E-value=0.55 Score=25.29 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=31.5
Q ss_pred HHHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 87523897799997993-89999998769874899969
Q gi|254780868|r 202 CFACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 202 ~~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
+...++||+|.+...++ .+.|++.+.|....|++.+.
T Consensus 4 ~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~~NlvL~da 41 (67)
T 1m5q_A 4 ELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANA 41 (67)
T ss_dssp HHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEE
T ss_conf 88762798699999999899999999879965699157
No 22
>>3cw1_A Small nuclear ribonucleoprotein-associated proteins B and B; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (A:)
Probab=88.62 E-value=1.3 Score=23.01 Aligned_cols=38 Identities=21% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCC
Q ss_conf 87523897799997993-899999987698748999699
Q gi|254780868|r 202 CFACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKK 239 (252)
Q Consensus 202 ~~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~ 239 (252)
+...+++++|++...++ .+.|++.+.|.+..|+|.+..
T Consensus 8 kL~~~in~rV~V~l~DGR~~~G~L~~fD~~mNlVL~d~~ 46 (174)
T 3cw1_A 8 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCD 46 (174)
T ss_pred HHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEECCEE
T ss_conf 999864987999982995999999998676787862738
No 23
>>1d3b_B Protein (small nuclear ribonucleoprotein associated protein B); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} (B:)
Probab=86.81 E-value=1.5 Score=22.50 Aligned_cols=34 Identities=24% Similarity=0.243 Sum_probs=29.9
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
.++|++|.+...++ .+.|++.+.|.++.|++.+.
T Consensus 11 ~~l~~~V~V~l~~gr~~~G~L~~~D~~~NlvL~d~ 45 (91)
T 1d3b_B 11 QHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDC 45 (91)
T ss_dssp GGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEECE
T ss_conf 87398799998599699999999867578797167
No 24
>>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} (A:)
Probab=86.06 E-value=2.2 Score=21.51 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=35.6
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCC---CCEEEEEEEEEC
Q ss_conf 23897799997993-899999987698748999699---989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKK---GCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~---G~~~~i~sGeI~ 251 (252)
.++|+.|.+...++ .+.|++.+.|....+.+++.. ...+....|+||
T Consensus 22 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNivL~~~~e~~~~~~~~~~g~~~ 72 (83)
T 1mgq_A 22 NSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVL 72 (83)
T ss_dssp HTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCEEEECCCEE
T ss_conf 858997999987999999999998899976991179991797070836399
No 25
>>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} (1:)
Probab=84.75 E-value=2.6 Score=21.12 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=35.8
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCC---CCEEEEEEEEEC
Q ss_conf 23897799997993-899999987698748999699---989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKK---GCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~---G~~~~i~sGeI~ 251 (252)
..+|++|.+...++ .+.|++.++|.+..+.+++.. ...+....|+||
T Consensus 11 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~~~~v~ 61 (75)
T 1h64_1 11 RSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIV 61 (75)
T ss_dssp TTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCCEE
T ss_conf 748987999995997999999999788847998899993798288867399
No 26
>>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} (A:)
Probab=84.67 E-value=2.6 Score=21.10 Aligned_cols=47 Identities=17% Similarity=0.194 Sum_probs=35.1
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECCC---CCEEEEEEEEEC
Q ss_conf 23897799997993-899999987698748999699---989999963110
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEKK---GCVRQIFTGDIF 251 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~~---G~~~~i~sGeI~ 251 (252)
..+|+.|.+...++ .+.|++.+.|....+.+++.. ...+....|.+|
T Consensus 11 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNivL~~~~e~~~~~~~~~l~~v~ 61 (77)
T 1i4k_A 11 RSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVV 61 (77)
T ss_dssp TTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCEEE
T ss_conf 758998999986998999999999798837997899991798287977099
No 27
>>3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP} (A:192-235)
Probab=84.55 E-value=1.9 Score=22.00 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=21.6
Q ss_pred EEEEEEEEECCCCCEEEECCCCCEEEEE
Q ss_conf 8999999876987489996999899999
Q gi|254780868|r 219 SILGRFVGVDDFGYLLLEEKKGCVRQIF 246 (252)
Q Consensus 219 ~~~G~~~gId~~G~L~i~~~~G~~~~i~ 246 (252)
-.+|+|.|+|++..++++++++ .+-|.
T Consensus 10 g~tGtFlGvDE~FGMLLr~~~~-ThLIP 36 (44)
T 3bfm_A 10 GRSGTFLGVDEDFGXLLRDETT-THLIP 36 (44)
T ss_dssp TEEEEEEEECTTCCEEEECSSC-EEEEC
T ss_pred CCCEEEEEECCCCEEEEEECCE-EEEEE
T ss_conf 3758999999997499998992-79998
No 28
>>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, homomeric, octamer, cytoplasm; 2.50A {Saccharomyces cerevisiae} (A:)
Probab=83.85 E-value=2.2 Score=21.57 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=30.4
Q ss_pred HHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 7523897799997993-89999998769874899969
Q gi|254780868|r 203 FACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 203 ~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
...++|+.|.+...++ .+.|++.+.|+...|.+++.
T Consensus 15 L~~~l~~~V~V~l~dg~~~~G~L~~~D~~mNlvL~d~ 51 (96)
T 3bw1_A 15 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDA 51 (96)
T ss_dssp HGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEECCE
T ss_conf 9987898699999299199999999889997298848
No 29
>>3cw1_E Small nuclear ribonucleoprotein E; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (E:)
Probab=83.23 E-value=3 Score=20.72 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 987523897799997993-89999998769874899969
Q gi|254780868|r 201 RCFACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 201 ~~~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
......+|+.|.+...++ .+.|++.++|+...|.+++.
T Consensus 23 ~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~ 61 (92)
T 3cw1_E 23 RYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDA 61 (92)
T ss_pred HHHHHCCCEEEEEEECCCEEEEEEEEEECCCCEEEEECE
T ss_conf 999627878999994798299999999867507998245
No 30
>>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} (A:)
Probab=82.73 E-value=3.1 Score=20.60 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=29.0
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEEC
Q ss_conf 23897799997993-8999999876987489996
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEE 237 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~ 237 (252)
-++|+.|.+...++ .+.|++.+.|....+.+++
T Consensus 16 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNivL~d 49 (81)
T 1th7_A 16 ESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSD 49 (81)
T ss_dssp HHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEE
T ss_conf 8779859999879969999999986877279802
No 31
>>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein; heptamer, translation; 2.80A {Saccharomyces cerevisiae} (A:)
Probab=80.48 E-value=3.7 Score=20.10 Aligned_cols=49 Identities=24% Similarity=0.332 Sum_probs=34.8
Q ss_pred HHHCCCCEEEEEEC-C-EEEEEEEEEECCCCCEEEECCC---CCEEEEEEEEEC
Q ss_conf 75238977999979-9-3899999987698748999699---989999963110
Q gi|254780868|r 203 FACGIGDLITIKLS-Y-GSILGRFVGVDDFGYLLLEEKK---GCVRQIFTGDIF 251 (252)
Q Consensus 203 ~~~~~gk~V~i~~~-~-~~~~G~~~gId~~G~L~i~~~~---G~~~~i~sGeI~ 251 (252)
....+|+.|.+... + ..+.|++.++|....|.+++.. ........|++|
T Consensus 26 L~~~~~~~V~V~Lk~ng~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~~g~~~ 79 (93)
T 1n9r_A 26 LKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIF 79 (93)
T ss_dssp CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEE
T ss_pred HHHCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCCCCEE
T ss_conf 986089879999974999999999998588705992489992687003847499
No 32
>>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet in the heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} (A:)
Probab=80.06 E-value=3.6 Score=20.21 Aligned_cols=34 Identities=32% Similarity=0.409 Sum_probs=29.4
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
-.+|+.|.+...++ .+.|++.+.|....+.+.+.
T Consensus 18 ~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~~~ 52 (81)
T 1i8f_A 18 DSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDA 52 (81)
T ss_dssp TTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEE
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEECCC
T ss_conf 86699799999599199999999769977499581
No 33
>>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} (A:)
Probab=80.04 E-value=2 Score=21.76 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=29.9
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
.++|+.|.+...++ .+.|++.+.|....|+|++.
T Consensus 35 ~~l~k~V~V~l~~gr~~~G~L~~~D~~~NlvL~d~ 69 (121)
T 2fwk_A 35 KCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDV 69 (121)
T ss_dssp HTBTSBCEEEETTTEEECCEEEEECTTCCEEEESC
T ss_pred HHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 87898799998799899999999879998399116
No 34
>>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} (A:)
Probab=79.25 E-value=2.2 Score=21.52 Aligned_cols=48 Identities=17% Similarity=0.343 Sum_probs=41.2
Q ss_pred HCCCCEEEEEECCEEE-EEEEEEECCCCCEEEECCCCCEEEEEEEEECC
Q ss_conf 2389779999799389-99999876987489996999899999631109
Q gi|254780868|r 205 CGIGDLITIKLSYGSI-LGRFVGVDDFGYLLLEEKKGCVRQIFTGDIFT 252 (252)
Q Consensus 205 ~~~gk~V~i~~~~~~~-~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~~ 252 (252)
...|..|....+++.+ .|++.++.+++.-.|+.+||....+..-+|++
T Consensus 64 ~~vG~~V~a~~~dg~~y~g~V~~~~~~~~y~V~fdDG~~~~v~~~~i~~ 112 (118)
T 2qqr_A 64 PAEGEVVQVRWTDGQVYGAKFVASHPIQXYQVEFEDGSQLVVKRDDVYT 112 (118)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEETTSCEEEECGGGEEE
T ss_pred CCCCCEEEEECCCCEEEEEEEEEEECCCEEEEEECCCCEEEECHHHEEE
T ss_conf 7889899998799859659999992598799998689988957899386
No 35
>>3cw1_G Small nuclear ribonucleoprotein G; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (G:)
Probab=78.29 E-value=4.4 Score=19.68 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=29.0
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
.++|+.|.+...++ .+.|++.++|....+.+.+.
T Consensus 11 ~~~g~~v~V~lk~g~~~~G~L~~~D~~mNlvL~~~ 45 (76)
T 3cw1_G 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDEC 45 (76)
T ss_pred HHCCCCEEEEECCCCEEEEEEEEECCCCCEEEEEE
T ss_conf 86798199998899399999999858564799867
No 36
>>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (A:)
Probab=78.08 E-value=4.4 Score=19.64 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=33.4
Q ss_pred HHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC-----CCCEEEEEEEEEC
Q ss_conf 7523897799997993-89999998769874899969-----9989999963110
Q gi|254780868|r 203 FACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK-----KGCVRQIFTGDIF 251 (252)
Q Consensus 203 ~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~-----~G~~~~i~sGeI~ 251 (252)
..-.+|+.|.+...++ .+.|++.++|....+.+.+. +| ....-|+||
T Consensus 7 L~~~~g~~V~V~l~ng~~~~G~L~~~D~~mNi~L~~~~~~~~~~--~~~~~~~v~ 59 (119)
T 1b34_A 7 LMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR--EPVQLETLS 59 (119)
T ss_dssp HHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTS--CCEEEEEEE
T ss_pred HHHCCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCC--CEEECCCEE
T ss_conf 98758986999988995999999988699268997999998999--688747689
No 37
>>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=76.38 E-value=4.9 Score=19.34 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=40.8
Q ss_pred HHCCCCEEEEEECCEE-EEEEEEEECCCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 5238977999979938-99999987698748999699989999963110
Q gi|254780868|r 204 ACGIGDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~~-~~G~~~gId~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
.+..|..|..+..++. +.|++.++++++.-.+..+.|..+.+..-+|+
T Consensus 9 ~~~~G~~c~A~~~Dg~~Yra~I~~v~~~~~~~v~fDyGn~e~V~~~~i~ 57 (74)
T 2equ_A 9 DFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIK 57 (74)
T ss_dssp CCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTSCEEEECGGGEE
T ss_pred CCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEECCCEEEECHHHCE
T ss_conf 6788999999989998996899998679889999972997998689987
No 38
>>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (B:)
Probab=76.34 E-value=5 Score=19.33 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 87523897799997993-89999998769874899969
Q gi|254780868|r 202 CFACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 202 ~~~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..+.++++.|.|...++ .+.|++++.|....|+|++.
T Consensus 33 ~l~~~~~k~V~V~L~~gr~~~G~L~~fD~~mNlvL~d~ 70 (118)
T 1b34_B 33 TQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENV 70 (118)
T ss_dssp HHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred HHHHHCCCEEEEEECCCCEEEEEEEEECCCCEEEEECE
T ss_conf 99997697899997799599999999710002673030
No 39
>>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown function; 1.95A {Archaeoglobus fulgidus} (A:)
Probab=76.11 E-value=5 Score=19.29 Aligned_cols=48 Identities=25% Similarity=0.459 Sum_probs=34.8
Q ss_pred HHCCCCEEEEEECCE--EEEEEEEEECCCCCEEEECCC---CCEEEEEEEEEC
Q ss_conf 523897799997993--899999987698748999699---989999963110
Q gi|254780868|r 204 ACGIGDLITIKLSYG--SILGRFVGVDDFGYLLLEEKK---GCVRQIFTGDIF 251 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~--~~~G~~~gId~~G~L~i~~~~---G~~~~i~sGeI~ 251 (252)
...+|+.|.+...++ .+.|++.+.|+...+.+++.. -.-+...-|.+|
T Consensus 11 ~~~~~~~V~V~lk~g~~~~~G~L~~~D~~mNivL~d~~~~~~~~~~~~l~~v~ 63 (77)
T 1ljo_A 11 KSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIV 63 (77)
T ss_dssp HHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHCCCEEEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCEEE
T ss_conf 87489989999979989999999999798726996899991698387967199
No 40
>>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=72.95 E-value=6 Score=18.80 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=40.6
Q ss_pred HHCCCCEEEEEECCE-EEEEEEEEECC-CCCEEEECCCCCEEEEEEEEECC
Q ss_conf 523897799997993-89999998769-87489996999899999631109
Q gi|254780868|r 204 ACGIGDLITIKLSYG-SILGRFVGVDD-FGYLLLEEKKGCVRQIFTGDIFT 252 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~-~~~G~~~gId~-~G~L~i~~~~G~~~~i~sGeI~~ 252 (252)
.+..|+.|.++-.++ .+-|++..|+. ++.-.|+.+||.++.+...||++
T Consensus 9 ~f~~Ge~VlarW~Dg~~Y~a~i~~v~~~~~~y~V~F~Dgs~~~v~~kdI~~ 59 (68)
T 2e5p_A 9 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISP 59 (68)
T ss_dssp CCCTTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEEETTTEEC
T ss_pred CCCCCCEEEEEEECCCEEEEEEEEEECCCCEEEEEEECCCEEEEEEECCCC
T ss_conf 633588899993068787668999844797899999169779999722423
No 41
>>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus erythematosus, SLE; HET: CIT; 2.00A {Homo sapiens} (A:)
Probab=72.81 E-value=6.1 Score=18.78 Aligned_cols=34 Identities=15% Similarity=0.222 Sum_probs=29.5
Q ss_pred HCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 23897799997993-89999998769874899969
Q gi|254780868|r 205 CGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 205 ~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
..+|+.|.+...++ .+.|++.+.|+...+.+++.
T Consensus 12 ~~~g~~V~V~l~~g~~~~G~L~~~D~~mNi~L~~~ 46 (75)
T 1d3b_A 12 EAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNI 46 (75)
T ss_dssp HTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEE
T ss_pred HCCCCEEEEEECCCEEEEEEEEEECCCCEEEEEEE
T ss_conf 65899899998998399999998969963999899
No 42
>>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} (A:)
Probab=71.30 E-value=6.6 Score=18.57 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=8.0
Q ss_pred EEEEEECCCCCEEEECCCCCEEE
Q ss_conf 99998769874899969998999
Q gi|254780868|r 222 GRFVGVDDFGYLLLEEKKGCVRQ 244 (252)
Q Consensus 222 G~~~gId~~G~L~i~~~~G~~~~ 244 (252)
|++..++.+|...|..++|..+.
T Consensus 28 a~I~~i~~~~~y~V~FddG~~~~ 50 (156)
T 1ssf_A 28 GKITRDVGAGKYKLLFDDGYECD 50 (156)
T ss_dssp EEEEECCTTTEEEEECTTSCEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEE
T ss_conf 89999868998999986898668
No 43
>>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=69.76 E-value=7.1 Score=18.36 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=39.2
Q ss_pred HCCCCEEEEEECCEE-EEEEEEEECCC-CCEEEECCCCCEEEEEEEEECC
Q ss_conf 238977999979938-99999987698-7489996999899999631109
Q gi|254780868|r 205 CGIGDLITIKLSYGS-ILGRFVGVDDF-GYLLLEEKKGCVRQIFTGDIFT 252 (252)
Q Consensus 205 ~~~gk~V~i~~~~~~-~~G~~~gId~~-G~L~i~~~~G~~~~i~sGeI~~ 252 (252)
+..|+.|.++-.++. +-|++..++.. +.-.|+.+||.++.+-..+|++
T Consensus 8 f~~Ge~VlarWsDg~~Y~ati~~v~~~~~~y~V~FeDgs~~~vk~~~i~~ 57 (63)
T 2e5q_A 8 LTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQH 57 (63)
T ss_dssp CCTTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEEC
T ss_pred CCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 64587799995288798886888626663799995678400566420324
No 44
>>3cw1_F Small nuclear ribonucleoprotein F; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, zinc finger, RNA recognition motif; 5.49A {Homo sapiens} (F:)
Probab=65.99 E-value=8.5 Score=17.88 Aligned_cols=35 Identities=26% Similarity=0.417 Sum_probs=29.2
Q ss_pred HHCCCCEEEEEECCE-EEEEEEEEECCCCCEEEECC
Q ss_conf 523897799997993-89999998769874899969
Q gi|254780868|r 204 ACGIGDLITIKLSYG-SILGRFVGVDDFGYLLLEEK 238 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~-~~~G~~~gId~~G~L~i~~~ 238 (252)
.-.+|+.|.+...++ .+.|++.+.|..-.+.+++.
T Consensus 12 ~~~~g~~V~V~l~~g~~~~G~L~~~D~~mNivL~~~ 47 (86)
T 3cw1_F 12 NGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANT 47 (86)
T ss_pred HHHCCCEEEEEEECCEEEEEEEEEECCCCEEEEEEE
T ss_conf 875797899999599199987898948871699129
No 45
>>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} (A:410-468)
Probab=49.85 E-value=16 Score=16.17 Aligned_cols=48 Identities=15% Similarity=0.047 Sum_probs=37.8
Q ss_pred HHCCCCEEEEEECCEE-EEEEEEEECCCCCEEEECCC-CCEEEEEEEEEC
Q ss_conf 5238977999979938-99999987698748999699-989999963110
Q gi|254780868|r 204 ACGIGDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKK-GCVRQIFTGDIF 251 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~~-~~G~~~gId~~G~L~i~~~~-G~~~~i~sGeI~ 251 (252)
....|+.+.....++. ..|++..++++|...|...| |..+.+..-+++
T Consensus 2 ~~~vG~~c~a~~~Dg~wYRa~I~~i~~~~~~~V~fvDyGn~~~v~~~~lr 51 (59)
T 3bdl_A 2 APRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLG 51 (59)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEE
T ss_pred CCCCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEECCCEEEEEHHHEE
T ss_conf 77655089999558978999999856899558999944862998879927
No 46
>>3bcw_A Uncharacterized protein; NP_887725.1, domain of unknown function with A RMLC-like cupin fold; 1.60A {Bordetella bronchiseptica RB50} (A:)
Probab=45.86 E-value=12 Score=16.97 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=17.9
Q ss_pred CCCEEEECCCCCEEEEEEEEEC
Q ss_conf 8748999699989999963110
Q gi|254780868|r 230 FGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 230 ~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
+|++.|.+++|+...+-.||++
T Consensus 76 eG~~~i~~~dG~~~~~~aGD~~ 97 (123)
T 3bcw_A 76 EGEARLVDPDGTVHAVKAGDAF 97 (123)
T ss_dssp EEEEEEECTTCCEEEEETTCEE
T ss_pred EEEEEEEECCCCEEEEECCCEE
T ss_conf 6399999499989999289999
No 47
>>1o5u_A Novel thermotoga maritima enzyme TM1112; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.83A {Thermotoga maritima} (A:)
Probab=42.38 E-value=13 Score=16.71 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=19.0
Q ss_pred CCCCEEEECCCCCEEEEEEEEEC
Q ss_conf 98748999699989999963110
Q gi|254780868|r 229 DFGYLLLEEKKGCVRQIFTGDIF 251 (252)
Q Consensus 229 ~~G~L~i~~~~G~~~~i~sGeI~ 251 (252)
-+|++.|..++|+...+..||++
T Consensus 56 leG~~~i~~~dG~~~~~~aGD~~ 78 (101)
T 1o5u_A 56 LEGKVEVTTEDGKKYVIEKGDLV 78 (101)
T ss_dssp EEEEEEEEETTCCEEEEETTCEE
T ss_pred EEEEEEEEECCCCEEEEECCCEE
T ss_conf 98599999199978999699899
No 48
>>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} (A:93-167)
Probab=38.49 E-value=24 Score=15.08 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=16.5
Q ss_pred EEEEEEECCCCCEEEECCCCCEE
Q ss_conf 99999876987489996999899
Q gi|254780868|r 221 LGRFVGVDDFGYLLLEEKKGCVR 243 (252)
Q Consensus 221 ~G~~~gId~~G~L~i~~~~G~~~ 243 (252)
+-.+.+|++||+|-+-+++|.++
T Consensus 5 eYqLidI~dDG~lsLm~e~G~~k 27 (75)
T 3hks_A 5 DYQLIDITEDGFVSLLTDSGGTK 27 (75)
T ss_dssp EEEEEEECTTSBEEEECTTSCEE
T ss_pred EEEEEEECCCCEEEEECCCCCEE
T ss_conf 68999986997499970588410
No 49
>>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} (A:)
Probab=38.23 E-value=24 Score=15.05 Aligned_cols=47 Identities=15% Similarity=0.084 Sum_probs=37.2
Q ss_pred HHCCCCEEEEEECCE-EEEEEEEEEC-CCCCEEEECCCCCEEEEEEEEE
Q ss_conf 523897799997993-8999999876-9874899969998999996311
Q gi|254780868|r 204 ACGIGDLITIKLSYG-SILGRFVGVD-DFGYLLLEEKKGCVRQIFTGDI 250 (252)
Q Consensus 204 ~~~~gk~V~i~~~~~-~~~G~~~gId-~~G~L~i~~~~G~~~~i~sGeI 250 (252)
.+..|+.|-.+-.++ -+-|++..|+ .++.-.|+.+||.++.+..-+|
T Consensus 13 ~f~~Ge~VLarWsDg~fYpgtI~~v~~~~~~y~V~F~Dg~~~~v~~~~i 61 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDI 61 (66)
T ss_dssp CSCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTE
T ss_pred CCCCCCEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 1166877999950787988889997166736999966686246785513
No 50
>>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyridoxal phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* (A:115-306)
Probab=31.66 E-value=31 Score=14.39 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=15.5
Q ss_pred EEEEEECCCCHHHHHHHHHHCCCCCCEEE
Q ss_conf 49998164856899999997399997899
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALSGDLGNLWI 43 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~~~~~~~~v 43 (252)
++.|..+=..-++.|.+++..-.....++
T Consensus 5 ~v~f~~SGseA~e~AlklAr~~~~r~~Ii 33 (192)
T 3dxv_A 5 KIWFGHSGSDANEAAYRAIVKATGRSGVI 33 (192)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHSCCEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 89985965999999999999975899699
No 51
>>3gju_A Putative aminotransferase; NP_107505.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti MAFF303099} PDB: 3fcr_A* (A:111-326)
Probab=29.60 E-value=33 Score=14.18 Aligned_cols=39 Identities=21% Similarity=-0.013 Sum_probs=18.4
Q ss_pred EEEEEECCCCHHHHHHHHHHCC------CCCCEEEEECCCCCCCC
Q ss_conf 4999816485689999999739------99978999824467836
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALSG------DLGNLWIVASCQTAGRG 53 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~~------~~~~~~v~A~~Qt~GrG 53 (252)
++.|..+=..-|+.|.+++..- .....++.-+.=-.|+.
T Consensus 4 ~v~f~~SGseA~e~AlklAr~~~~~~~~~~r~~ii~~~~~yHG~t 48 (216)
T 3gju_A 4 RVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSG 48 (216)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSS
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC
T ss_conf 687425532477889999999898619987528999828744665
No 52
>>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} (A:122-306)
Probab=28.94 E-value=34 Score=14.11 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=7.0
Q ss_pred EEEEECCCCHHHHHHHHHH
Q ss_conf 9998164856899999997
Q gi|254780868|r 16 YEFFDTISSTNDECMKRAL 34 (252)
Q Consensus 16 i~~~~~~~STn~~~~~~~~ 34 (252)
+.|..+=..-|+.|.+++.
T Consensus 4 v~f~~SGseA~e~AiklAr 22 (185)
T 1z7d_A 4 VLMMNTGAEANETAYKLCR 22 (185)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHH
T ss_conf 5774112421567999998
No 53
>>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} (A:114-322)
Probab=27.79 E-value=36 Score=13.98 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=10.0
Q ss_pred EEEEEECCCCHHHHHHHHHH
Q ss_conf 49998164856899999997
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRAL 34 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~ 34 (252)
++.|..+=..-++.|.+++.
T Consensus 5 ~v~f~~sGseAve~AiklAr 24 (209)
T 3hmu_A 5 HVFFAGGGSEANDTNIRMVR 24 (209)
T ss_dssp EEEEESSHHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
T ss_conf 79971886279999999999
No 54
>>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent enzyme, pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} (A:133-317)
Probab=26.39 E-value=38 Score=13.83 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=7.1
Q ss_pred EEEEECCCCHHHHHHHHH
Q ss_conf 999816485689999999
Q gi|254780868|r 16 YEFFDTISSTNDECMKRA 33 (252)
Q Consensus 16 i~~~~~~~STn~~~~~~~ 33 (252)
+.|..+=..-++.|.+++
T Consensus 4 v~f~~SGseA~e~AlklA 21 (185)
T 2oat_A 4 VLPMNTGVEAGETACKLA 21 (185)
T ss_dssp EEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHH
T ss_conf 988447776415689999
No 55
>>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} (A:102-306)
Probab=25.21 E-value=40 Score=13.69 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=17.7
Q ss_pred EEEEEECCCCHHHHHHHHHHC-----CCCCCEEEEECCCCCCC
Q ss_conf 499981648568999999973-----99997899982446783
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALS-----GDLGNLWIVASCQTAGR 52 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~-----~~~~~~~v~A~~Qt~Gr 52 (252)
++.|..+=..-|+.|.+++.. +.....++.-+.=-.|+
T Consensus 4 ~v~f~~SGseA~e~AlklAr~~~~~~~~~r~~ii~~~~syHG~ 46 (205)
T 1s0a_A 4 CVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGD 46 (205)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCC
T ss_conf 3663145541013445554310000246776799997876366
No 56
>>3bv0_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; biotin biosynthesis, pyridoxal phosphate, S-adenosyl-L-methionine; HET: PLP; 2.21A {Mycobacterium tuberculosis} (A:114-314)
Probab=24.63 E-value=41 Score=13.62 Aligned_cols=21 Identities=29% Similarity=0.159 Sum_probs=11.5
Q ss_pred EEEEEECCCCHHHHHHHHHHC
Q ss_conf 499981648568999999973
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALS 35 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~ 35 (252)
++.|..+=..-|+.|.+++..
T Consensus 4 ~v~f~~sGseA~e~Alklar~ 24 (201)
T 3bv0_A 4 TVFFSDSGSVSVEVAAKMALQ 24 (201)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCCHHHHHHHHH
T ss_conf 243124433320134545545
No 57
>>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- aminobutyric acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} (A:124-348)
Probab=22.83 E-value=44 Score=13.41 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=11.3
Q ss_pred CCCEEEEEEECCCC-HHHHHHHHHH
Q ss_conf 99704999816485-6899999997
Q gi|254780868|r 11 PYSFRYEFFDTISS-TNDECMKRAL 34 (252)
Q Consensus 11 p~~~~i~~~~~~~S-Tn~~~~~~~~ 34 (252)
|.+..-.+|-.-+| -++.|.+++.
T Consensus 1 P~g~~~v~f~~sGseAve~A~kla~ 25 (225)
T 1ohv_A 1 PKGMSQLITMACGSCSNENAFKTIF 25 (225)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf 7670248870575057789999999
No 58
>>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus VF5} (A:85-265)
Probab=20.27 E-value=50 Score=13.08 Aligned_cols=21 Identities=14% Similarity=0.154 Sum_probs=11.9
Q ss_pred EEEEEECCCCHHHHHHHHHHC
Q ss_conf 499981648568999999973
Q gi|254780868|r 15 RYEFFDTISSTNDECMKRALS 35 (252)
Q Consensus 15 ~i~~~~~~~STn~~~~~~~~~ 35 (252)
++.|..+=..-|+.|.+.+..
T Consensus 4 ~v~f~~SGseA~e~AlklAr~ 24 (181)
T 2eh6_A 4 KVFFANSGTESVEAAIKLARK 24 (181)
T ss_dssp EEEEESSHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHH
T ss_conf 114514764248999999998
Done!