HHsearch results for GI: 254780868 and protein with PDBid: 1vqz_A
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} SCOP: d.224.1.3 d.104.1.3
Probab=97.05 E-value=0.012 Score=34.67 Aligned_cols=138 Identities=16% Similarity=0.092 Sum_probs=82.0
Q ss_pred CCEEEEECCCCC-----------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 978999824467-----------------836799853166333341322353224000210137799999999997445
Q gi|254780868|r 39 GNLWIVASCQTA-----------------GRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLP 101 (252)
Q Consensus 39 ~~~~v~A~~Qt~-----------------GrGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~ 101 (252)
.|++++-.+|.. -|=+.|..=+..+|++.+|++.+.+..... .--..+-.++++++++
T Consensus 50 ~p~VviG~~Q~~~~Evn~~~~~~~gi~vvRR~sGGGaVyhD~g~l~~s~i~~~~~~~~~---~y~~~~~~ii~aL~~l-- 124 (341)
T 1vqz_A 50 KPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAF---DFKSFSTPVINTLAQL-- 124 (341)
T ss_dssp SSEEEECTTCCGGGTBCHHHHHHHTCEEEECSSCSCCEEECTTEEEEEEEEECCTTCCC---SHHHHHHHHHHHHHHT--
T ss_pred CCEEEECCCCCHHHHHCHHHHHHCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCHH---HHHHHHHHHHHHHHHH--
T ss_conf 99899898898377668899987699399982899749989996799999737665221---1999999999999973--
Q ss_pred CCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCC-----------CCCC--------CCCCCCCCCC
Q ss_conf 42102462146506710221122223323225832676521544444-----------6422--------3365321002
Q gi|254780868|r 102 VGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKH-----------CPVD--------TPYPVTSLQR 162 (252)
Q Consensus 102 ~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~-----------~~~~--------~~~~~tsL~~ 162 (252)
|.++.+.=.|||.++++|++|.=.-.. .. .++..--+.+.. +++. .....|+|..
T Consensus 125 -Gi~a~~~~rnDi~v~g~KIsG~A~~~~---~~--~~l~hgtll~~~d~~~l~~~L~~~~~k~~~k~~~Sv~~rvtnl~~ 198 (341)
T 1vqz_A 125 -GVKAEFTGRNDLEIDGKKFCGNAQAYI---NG--RIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIIN 198 (341)
T ss_dssp -TCCEEEETTTEEEETTEEEEEEEEEEE---TT--EEEEEEEEESSCCTTHHHHHBCCCSSCCEECSCCCCCCCBCCGGG
T ss_pred -CCCCEEECCCCCEECCEEEEEEEEEEE---CC--EEEEECEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHHEEHHH
T ss_conf -976377246882488868643567985---88--689942000378999999883899402023056422655230897
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf -3677897899987779999999987
Q gi|254780868|r 163 -EGGCIDLKDIFSLLFQDVARVLDLW 187 (252)
Q Consensus 163 -~~~~~~~~~l~~~l~~~l~~~~~~~ 187 (252)
.+..++.+++...+++.+...+...
T Consensus 199 ~l~~~~~~e~~~~~l~~~f~~~~~~~ 224 (341)
T 1vqz_A 199 ELPKKITVEKFRDLLLEYMKKEYPEM 224 (341)
T ss_dssp TCSSCCCHHHHHHHHHHHHHHHCTTC
T ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 75999999999999999999973888