HHSEARCH alignment of GI: 254780868 and SCOP domain: d1biaa3

Alignment
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=337.63  Aligned_cols=188  Identities=28%  Similarity=0.435  Sum_probs=166.8

Q ss_pred             CEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHCCCHHHHHHHH
Q ss_conf             7049998164856899999997399997899982446783679985316633-334132235322400021013779999
Q gi|254780868|r   13 SFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKG-NLYASLLLIDSISKDSLTLLSFAIAVA   91 (252)
Q Consensus        13 ~~~i~~~~~~~STn~~~~~~~~~~~~~~~~v~A~~Qt~GrGr~gr~W~s~~G-~l~~S~~~~~~~~~~~~~~l~~~~~~a   91 (252)
                      ++++.+||++||||+++++++.+. +++++|+|++||+||||+||.|+||+| +||+|++++++.+....+.+++++|+|
T Consensus        15 ~~~i~~~~~i~STn~~~~~~~~~~-~~~~vv~A~~QT~GrGR~gr~W~S~~G~~l~~S~~~~~~~~~~~~~~l~~~~~la   93 (207)
T d1biaa3          15 GGSVAVLPVIDSTNQYLLDRIGEL-KSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIV   93 (207)
T ss_dssp             SSCEEECSSBSCHHHHHHTTGGGC-CTTCEEEESCBTTC---------CCTTSEEEEEEEEEECC-CCCTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHCC-CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf             985899802484999999861437-9984999893456788699824466566654122100246704431034577888


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC--CC-CCCCCCCCCCCCCC
Q ss_conf             9999997445421024621465067102211222233232258326765215444446422--33-65321002367789
Q gi|254780868|r   92 MRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVD--TP-YPVTSLQREGGCID  168 (252)
Q Consensus        92 i~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~--~~-~~~tsL~~~~~~~~  168 (252)
                      ++++++.+.  +.++++|||||||+++||+||||+|+....+...++|||||||++..+.+  .+ .+++++.+.+..++
T Consensus        94 v~~~l~~~~--~~~~~iKWPNDIl~~~kKi~GIL~E~~~~~~~~~~vviGiGiNv~~~~~~~~~~~~~~s~l~~~~~~i~  171 (207)
T d1biaa3          94 MAEVLRKLG--ADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLD  171 (207)
T ss_dssp             HHHHHHHTT--CTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECCC-----------CCCTTTTTCCCC
T ss_pred             HHHHHHHCC--CCEEEEEECHHHHCCCCCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             888876314--530335533155458875104147777516872113541033323688860001012578998689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             789998777999999998730355648899999875
Q gi|254780868|r  169 LKDIFSLLFQDVARVLDLWKKDTGREEIMNLWRCFA  204 (252)
Q Consensus       169 ~~~l~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~  204 (252)
                      ++++++.++.++..+++.|.+ .+|++++++|++++
T Consensus       172 ~~~l~~~ll~~l~~~l~~~~~-~gf~~~~~~w~~~D  206 (207)
T d1biaa3         172 RNTLAAMLIRELRAALELFEQ-EGLAPYLSRWEKLD  206 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HTTGGGHHHHHHHB
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHC
T ss_conf             999999999999999999997-39899999999743


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain
species: Escherichia coli [TaxId: 562]