HHSEARCH alignment of GI: 254780868 and SCOP domain: d2c8ma1

Alignment
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]}
Probab=95.98  E-value=0.023  Score=31.49  Aligned_cols=123  Identities=15%  Similarity=0.064  Sum_probs=70.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE----------ECCCEEEECCCC
Q ss_conf             3679985316633334132235322400021013779999999999744542102462----------146506710221
Q gi|254780868|r   52 RGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIK----------WPNDILVFQRKI  121 (252)
Q Consensus        52 rGr~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iK----------WPNDi~~~~kKi  121 (252)
                      |-+.|..=+-.+|++.+|++++.+-.  .....--.+.-++.++++.+.   +++.+.          =++|+.++++|+
T Consensus        72 R~tGGgaV~hd~g~l~~s~i~~~~~~--~~~~~y~~~~~~i~~~l~~lG---i~a~~~~~~~~~~~~~~~~di~~~~~Ki  146 (256)
T d2c8ma1          72 RYTGGGAVYHDLGDLNFSVVRSSDDM--DITSMFRTMNEAVVNSLRILG---LDARPGELNDVSIPVNKKTDIMAGEKKI  146 (256)
T ss_dssp             CSSCSCCEEECTTEEEEEEEEECSSC--CHHHHHHHHHHHHHHHHHHTT---CCCEECCBCCTTSSSSBTTSEEETTEEE
T ss_pred             EECCCCEEEECCCCEEEEEEECCCCC--CHHHHHHHHHHHHHHHHHHCC---CEEEECCCCCEEEEECCCCCCCCCCCEE
T ss_conf             70698628978998499999715899--999999999999999876528---0378868587089820477654554334


Q ss_pred             CCCCCCCCCCCCCCEEEEEECCCCCCCCC-----------CCC--------CCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             12222332322583267652154444464-----------223--------36532100236778978999877799999
Q gi|254780868|r  122 AGILIETLNLKNGLQAVVVGIGLNVKHCP-----------VDT--------PYPVTSLQREGGCIDLKDIFSLLFQDVAR  182 (252)
Q Consensus       122 ~GIL~E~~~~~~~~~~~viGiGiNi~~~~-----------~~~--------~~~~tsL~~~~~~~~~~~l~~~l~~~l~~  182 (252)
                      +|.-.-..   .  ..++.+..|+++...           ...        ....|+|... ..++.+++...+++.|.+
T Consensus       147 ~G~a~~~~---~--~~~l~hgtll~~~d~~~l~~~L~~~~~~~~~~~~~s~~~~vt~L~~~-~~~~~e~~~~~l~~~f~~  220 (256)
T d2c8ma1         147 MGAAGAMR---K--GAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKIAKSTRERVANVTDF-VDVSIDEVRNALIRGFSE  220 (256)
T ss_dssp             EEEEEEEE---T--TEEEEEEEEESSCCHHHHHHHTC---------------CCBCCGGGT-SCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCC---C--CEEEEEEEEECCCCHHHHHHHHCCCCCCHHHHCCCCHHHHCCCHHHC-CCCCHHHHHHHHHHHHHH
T ss_conf             03222213---5--17999867403799999998758895010320355447533048762-898999999999999999


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780868|r  183 VLD  185 (252)
Q Consensus       183 ~~~  185 (252)
                      .+.
T Consensus       221 ~~~  223 (256)
T d2c8ma1         221 TLH  223 (256)
T ss_dssp             HHT
T ss_pred             HHC
T ss_conf             858


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Lipoate-protein ligase A
species: Thermoplasma acidophilum [TaxId: 2303]