HHSEARCH alignment of GI: 254780868 and SCOP domain: d2ddza1

Alignment

Probab=91.25  E-value=0.18  Score=25.82  Aligned_cols=91  Identities=19%  Similarity=0.233  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             13779999999999744542102462146506710221122223323225832676521544444642233653210023
Q gi|254780868|r   84 LSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQRE  163 (252)
Q Consensus        84 l~~~~~~ai~~~l~~~~~~~~~~~iKWPNDi~~~~kKi~GIL~E~~~~~~~~~~~viGiGiNi~~~~~~~~~~~tsL~~~  163 (252)
                      .+-+....+++.|.+.   +.++. +==-|||++++|+.=-..-     .+.....+=.|||+...-.-.+-++.+|.+.
T Consensus        85 ~QRLl~~~~~evL~~~---g~~~~-r~GDDLyv~~~KlSVSIA~-----~s~~s~~iH~GINV~~~g~p~~v~a~~L~d~  155 (188)
T d2ddza1          85 LQKLLIARLVELLWNY---GIEAS-RRGDDIYVNGRKLSISIAT-----VSPVSIKIHIGLNVKTVGVPPGVDAIGLEEL  155 (188)
T ss_dssp             HHHHHHHHHHHHHHTT---TCCEE-EETTEEEETTEECEEEEEE-----ECSSCEEEEEEEESCCSSCCSSSCBCCHHHH
T ss_pred             HHHHHHHHHHHHHHHC---CCCEE-ECCCEEEECCCEEEEEEEE-----ECCCCEEEEEEEEEECCCCCCCCCEECHHHC
T ss_conf             9999999999999973---98537-6278379839778999996-----0688248898788761674787512016432


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             6778978999877799999999
Q gi|254780868|r  164 GGCIDLKDIFSLLFQDVARVLD  185 (252)
Q Consensus       164 ~~~~~~~~l~~~l~~~l~~~~~  185 (252)
                      +.  +.+++...+...+..-++
T Consensus       156 g~--d~~~fm~~v~~~y~~E~~  175 (188)
T d2ddza1         156 GI--DPTEFMERSAKALVEEIE  175 (188)
T ss_dssp             TC--CHHHHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHH
T ss_conf             88--999999999999999988

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: PH0223-like
domain: Uncharacterized protein PH0223
species: Pyrococcus horikoshii [TaxId: 53953]