HHSEARCH alignment of GI: 254780868 and SCOP domain: d2p5ia1

Alignment
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}
Probab=96.78  E-value=0.0014  Score=39.06  Aligned_cols=122  Identities=18%  Similarity=0.090  Sum_probs=68.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEE--------ECCCEEEECCCCCCCC
Q ss_conf             79985316633334132235322400021013779999999999744542102462--------1465067102211222
Q gi|254780868|r   54 RRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIK--------WPNDILVFQRKIAGIL  125 (252)
Q Consensus        54 r~gr~W~s~~G~l~~S~~~~~~~~~~~~~~l~~~~~~ai~~~l~~~~~~~~~~~iK--------WPNDi~~~~kKi~GIL  125 (252)
                      +.|..=+-.+|++.+|++++.+.+.. ....--.++-.+.++++.+   |+++.++        =.|||.++++||+|+=
T Consensus        79 tGGgaV~hd~g~l~~s~i~~~~~~~~-~~~~y~~~~~~i~~~l~~l---Gi~a~~~~~~~~~c~g~~Dl~v~g~Ki~G~A  154 (265)
T d2p5ia1          79 SGGLAVVLDSGILNLSLVLKEEKGFS-IDDGYELMYELICSMFQDH---REQIEAREIVGSYCPGSYDLSIDGKKFAGIS  154 (265)
T ss_dssp             SCCCCEEECTTEEEEEEEEECCTTCC-HHHHHHHHHHHHHHHTC------CCCEECCCTTSSSCCTTCEEETTEEEEEEE
T ss_pred             CCCCEEEECCCCCEEEEEECCCCCCC-HHHHHHHHHHHHHHHHHHC---CCCEEECCCCCCCCCCCCCEEECCEEEEEEE
T ss_conf             89955997699818999974344531-7899999999999999972---9742774666777988774688888999876


Q ss_pred             CCCCCCCCCCEEEEEECCCCCCCC----------C---------------CCCCCCCCCCCC-CCCCCCHHHHHHHHHHH
Q ss_conf             233232258326765215444446----------4---------------223365321002-36778978999877799
Q gi|254780868|r  126 IETLNLKNGLQAVVVGIGLNVKHC----------P---------------VDTPYPVTSLQR-EGGCIDLKDIFSLLFQD  179 (252)
Q Consensus       126 ~E~~~~~~~~~~~viGiGiNi~~~----------~---------------~~~~~~~tsL~~-~~~~~~~~~l~~~l~~~  179 (252)
                      - ....+    .+...--|.+...          |               ...+...|+|.+ .+..++.+++...++..
T Consensus       155 q-~~~~~----~~l~hgsll~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~vtsL~~~l~~~~~~~~v~~~l~~~  229 (265)
T d2p5ia1         155 Q-RRIRG----GVAVQIYLCVSGSGAERAKMIRTFYDKAVAGQPTKFVYPRIKPETMASLSELLGQPHNVSDVLLKALMT  229 (265)
T ss_dssp             E-EEETT----EEEEEEEEECSSCHHHHHHHHHHHHHHHHTTSCCSSCCCCCCGGGBCCHHHHHTSCCCHHHHHHHHHHH
T ss_pred             E-EEECC----EEEEEEEEEECCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCHHHCCCHHHHHCCCCCHHHHHHHHHHH
T ss_conf             7-89888----899998999648989999997123222211356433456642220276999848999999999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780868|r  180 VARVL  184 (252)
Q Consensus       180 l~~~~  184 (252)
                      |....
T Consensus       230 f~~~~  234 (265)
T d2p5ia1         230 LQQHG  234 (265)
T ss_dssp             HHHTT
T ss_pred             HHHHC
T ss_conf             99856


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: LplA-like
domain: Hypothetical protein BH3822
species: Bacillus halodurans [TaxId: 86665]