RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (252 letters) >gnl|CDD|161719 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase] ligase region. The protein name suggests that this enzyme transfers biotin only to acetyl-CoA-carboxylase but it also transfers the biotin moiety to other proteins. The apparent orthologs among the eukaryotes are larger proteins that contain a single copy of this domain. Length = 237 Score = 146 bits (371), Expect = 4e-36 Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 12/238 (5%) Query: 18 FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSIS 77 D I STN ++ A G L +VA QTAGRGRR KW+S +G LY SL+L + Sbjct: 4 VLDVIDSTNQYALELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEGGLYFSLILRPDLP 63 Query: 78 KDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQA 137 K L+ +A+ V+ +G V++KWPNDIL+ +K+ GIL E +N Sbjct: 64 KSPAPGLTLVAGIAIAEVLKE---LGDQVQVKWPNDILLKDKKLGGILTELTGKENRADY 120 Query: 138 VVVGIGLNV--KHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDL---WKKDTG 192 VV+GIG+NV + SL E G IDL L + R + W + G Sbjct: 121 VVIGIGINVQNRKPAESLREQAISLSEEAG-IDLDR--GELIEGFLRNFEENLEWFEQEG 177 Query: 193 REEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 +EI++ W + IG +++ G I G G+D G LLLE+ G +++I +G+I Sbjct: 178 IDEILSKWEKLSAHIGREVSLTTGNGEIEGIARGIDKDGALLLEDGGG-IKKIISGEI 234 >gnl|CDD|183359 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional. Length = 319 Score = 127 bits (321), Expect = 3e-30 Identities = 76/241 (31%), Positives = 111/241 (46%), Gaps = 20/241 (8%) Query: 17 EFFDTISSTNDECMKRAL---SGDLGNLWIVASCQTAGRGRRDNKWISDKG-NLYASLLL 72 I STN + R SGDL +A QTAGRGRR +W S G NLY SL Sbjct: 81 TVLPVIDSTNQYLLDRIAELKSGDL----CLAEYQTAGRGRRGRQWFSPFGGNLYLSLYW 136 Query: 73 IDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132 + LS + +A+ + DV +KWPNDI + RK+AGIL+E Sbjct: 137 RLNQGPAQAMGLSLVVGIAIAEALRRL--GAIDVGLKWPNDIYLNDRKLAGILVELSGET 194 Query: 133 NGLQAVVVGIGLNV-----KHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLW 187 VV+GIG+NV +D P+ + LQ G ID + + L + + L+L+ Sbjct: 195 GDAAHVVIGIGINVAMPDFPEELIDQPW--SDLQEAGPTIDRNQLAAELIKQLRAALELF 252 Query: 188 KKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFT 247 ++ G + W+ +G + + + I G G+D+ G LLLE+ V + F Sbjct: 253 EQ-EGLAPFLERWKKLDLFLGREVKLIIGDKEISGIARGIDEQGALLLED--DGVEKPFN 309 Query: 248 G 248 G Sbjct: 310 G 310 >gnl|CDD|169384 PRK08330, PRK08330, biotin--protein ligase; Provisional. Length = 236 Score = 114 bits (286), Expect = 3e-26 Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 22/240 (9%) Query: 18 FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSIS 77 +FD + STN+ + A + G + IVA QTAG GR+ W S +G L+ S++L +S Sbjct: 7 YFDEVDSTNEYAKRIAPDEEEGTV-IVADRQTAGHGRKGRAWASPEGGLWMSVILKPKVS 65 Query: 78 KDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQA 137 + L L F A+A V+ + G + KIKWPND+LV +KIAG+L+E Sbjct: 66 PEHLPKLVFLGALA---VVDTLREFGIEGKIKWPNDVLVNYKKIAGVLVEGKGDF----- 117 Query: 138 VVVGIGLNVKH-CPVDTPYPVTSLQRE-GGCIDLKDIFSLLFQDVARVLDLWKKD--TGR 193 VV+GIGLNV + P + TS++ G + L ++F L LD W K G Sbjct: 118 VVLGIGLNVNNEIPDELRETATSMKEVLGREVPLIEVFKRLV----ENLDRWYKLFLEGP 173 Query: 194 EEIM-NLWRCFACGIGDLITIKLSYGSIL--GRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 EI+ + +G + I + G IL G +D+FG L+L G V+++ GD+ Sbjct: 174 GEILEEVKGRSMI-LGKRVKI-IGDGEILVEGIAEDIDEFGALILRLDDGTVKKVLYGDV 231 >gnl|CDD|180776 PRK06955, PRK06955, biotin--protein ligase; Provisional. Length = 300 Score = 94.5 bits (235), Expect = 2e-20 Identities = 82/260 (31%), Positives = 115/260 (44%), Gaps = 30/260 (11%) Query: 17 EFFDTISSTNDECMK--RAL----SGDLGNLWIVASCQTAGRGRRDNKWISDKGN-LYAS 69 E + STN + M +AL + VA QTAGRGR+ W + GN L S Sbjct: 36 EIVEETGSTNADLMARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNALLFS 95 Query: 70 LLLIDSISKDSLTLLSFAIAVAMRSVIASTLPV--GTDVKIKWPNDILVFQRKIAGILIE 127 + + +L LS A+ VA+ +A LP G + +KWPND+L+ RK+AGILIE Sbjct: 96 VACVLPRPVAALAGLSLAVGVALAEALA-ALPAALGQRIALKWPNDLLIAGRKLAGILIE 154 Query: 128 TLNLKNGLQAVVVGIGLNVK-----HCPVDTPY----------PVTSLQREGGCIDLKDI 172 T+ AVV+GIGLNV+ VD P +L +L D Sbjct: 155 TVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLTDT 214 Query: 173 FSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFV--GVDDF 230 + +A L + D G W G + + L G+ L R V G+D+ Sbjct: 215 LAAALNALAPALQAFGAD-GLAPFAARWHALHAYAGREVVL-LEDGAELARGVAHGIDET 272 Query: 231 GYLLLEEKKGCVRQIFTGDI 250 G LLL+ G + I GD+ Sbjct: 273 GQLLLDTPAG-RQAIAAGDV 291 >gnl|CDD|181443 PRK08477, PRK08477, biotin--protein ligase; Provisional. Length = 211 Score = 85.4 bits (212), Expect = 1e-17 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 21/177 (11%) Query: 17 EFFDTISSTNDECMKRALSGDL-GNLWIVASCQTAGRGRRDNKWISDKGNLYASLLL-ID 74 F+++ ST +++ +G+L IVA QTAG G R N W KGNL+ S L Sbjct: 4 RVFESLDSTQTYLIEKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKGNLFFSFALKES 63 Query: 75 SISKDSLTLLSFAI--AVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132 + KD L L S +I ++ V+ +G+ V +KWPND+ + +KI G++ N Sbjct: 64 DLPKD-LPLQSSSIYFGFLLKEVLKE---LGSKVWLKWPNDLYLDDKKIGGVIT---NKI 116 Query: 133 NGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWKK 189 +V GIGLN+K P + L E I + Q + + + LWK+ Sbjct: 117 KNF--IVCGIGLNLKFSPKNF----ACLDIE---ISDDLLLEGFLQKIEKKI-LWKQ 163 >gnl|CDD|168301 PRK05935, PRK05935, biotin--protein ligase; Provisional. Length = 190 Score = 77.9 bits (192), Expect = 2e-15 Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 28/195 (14%) Query: 16 YEFFDTISSTNDECMKRALSGDLGNLW-------IVASCQTAGRGRRDNKWISDKGNLYA 68 YE +T STN + + +LW I QTAG+G+ W S +L A Sbjct: 6 YEIAET-PSTN------TTAKEGMHLWDPYALTVISTREQTAGKGKFGKSWHSSDQDLLA 58 Query: 69 SL-LLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIE 127 S I ++ D L MR + IKWPND+LV K+ G+L E Sbjct: 59 SFCFFITVLNIDVSLLFRLGTEAVMRLGEDLGITEAV---IKWPNDVLVHGEKLCGVLCE 115 Query: 128 TLNLKNGLQAVVVGIGLNVKHCP---VDTPYPVTSLQRE-GGCIDLKDIFSLLFQDVARV 183 T+ +K GL V++GIG+N + P TSLQ G IDL++ L + + V Sbjct: 116 TIPVKGGL-GVILGIGVNGNTTKDELLGIDQPATSLQELLGHPIDLEEQRERLIKHIKHV 174 Query: 184 L-----DLWKKDTGR 193 L L +++ Sbjct: 175 LIQTLPKLLARESNH 189 >gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional. Length = 245 Score = 76.1 bits (187), Expect = 7e-15 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 12/152 (7%) Query: 18 FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLID-SI 76 F ++ST D + ++A QTAGRG W S KGN+Y +L + + Sbjct: 11 FVGEVTSTMDVARTMLAAAGGKPFAVLAESQTAGRGTGGRTWTSPKGNMYFTLCIPQKGV 70 Query: 77 SKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQ 136 + + +L +A R+ I L G V KWPNDI+ +KI G LIE+ G + Sbjct: 71 PPELVPVLPLITGLACRAAIMEVLH-GAAVHTKWPNDIIYAGKKIGGSLIES----EG-E 124 Query: 137 AVVVGIGLNVKHCPVDTPYPVTSLQREGGCID 168 +++GIG+N++ P PVT RE ++ Sbjct: 125 YLIIGIGMNIEVAP-----PVTDAGRESTMVN 151 >gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase; Provisional. Length = 285 Score = 67.2 bits (164), Expect = 4e-12 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 29/169 (17%) Query: 19 FDTISSTNDEC---MKRAL-SGDL-GNLWIVASC--QTAGRGRRDNK------WISDKGN 65 FD + ST C MKR + +G L + I+ SC QT G G RD K W+S+KGN Sbjct: 22 FDVLDSTQLYCKRNMKRFIQNGKLQDDNMIIVSCNEQTNGIGTRDTKKNQDRIWLSEKGN 81 Query: 66 LYAS-LLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGI 124 L+ + + L + + + L+ VA+ + V +IKW ND+LV +KIAG Sbjct: 82 LFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEYFHLV---TQIKWINDVLVNYKKIAGC 138 Query: 125 LIETLNLKNGLQ------AVVVGIGLNV----KHCPVDTPYPVTSLQRE 163 L+ L + V+VGIG+NV KH ++ Y TS+++E Sbjct: 139 LVHLYYLDDFPNLNSRYVCVMVGIGINVTLEDKHNLLNNNY--TSIKKE 185 >gnl|CDD|183976 PRK13325, PRK13325, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed. Length = 592 Score = 62.4 bits (151), Expect = 1e-10 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 16/237 (6%) Query: 23 SSTNDECMKRA-LSGDLGNLWI-VASCQTAGRGRRDNKWISDKGN-LYASLLLIDSISKD 79 +S+NDE ++ A ++ D + I V Q+ GRGR+ KW G L S + + Sbjct: 91 ASSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQY 150 Query: 80 SLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVV 139 L LS AVA R ++ +G +IKWPND++V + K+ GILIET+ G V Sbjct: 151 ELGSLSPVAAVACRRALSR---LGLKTQIKWPNDLVVGRDKLGGILIETVR-TGGKTVAV 206 Query: 140 VGIGLN-VKHCPVDTPYPVTSLQREG---GCIDLKDIFSLLFQDVARVLDLWKKDTGREE 195 VGIG+N V V+ V SL + G D + L ++ VL + +D G Sbjct: 207 VGIGINFVLPKEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARD-GFAP 265 Query: 196 IMNLWRCFACGIGDLITIKLSYGSIL--GRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 + ++ G + + L G + G GVD G L LE +G + + +G+I Sbjct: 266 FVAEYQAANRDHGKAVLL-LRDGETVFEGTVKGVDGQGVLHLETAEG-KQTVVSGEI 320 >gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing protein; Provisional. Length = 391 Score = 28.5 bits (64), Expect = 1.5 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 180 VARVLDLWKKDTGREE 195 V R+LD +KK+TGR+ Sbjct: 183 VGRILDWYKKETGRDS 198 >gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein; Provisional. Length = 200 Score = 26.4 bits (59), Expect = 7.3 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%) Query: 105 DVKIKWPNDILVFQ---RKIAGILIETLNLKNGLQAVVVGIGLN 145 D+ I W + I R IA + + L ++ VVVGI + Sbjct: 53 DIHIDWSS-IGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKS 95 >gnl|CDD|184711 PRK14499, PRK14499, molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional. Length = 308 Score = 26.4 bits (58), Expect = 7.3 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 69 SLLLIDSISK------DSLTLLSFAIAVAMRSVIASTLPVGTDVKI 108 SLL I SI K L FA + ++ + +GT +KI Sbjct: 206 SLLDISSIKKMEEYGLKGLCFGKFAENITTENLDLQKISLGTKLKI 251 >gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated. Length = 822 Score = 26.1 bits (58), Expect = 8.2 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%) Query: 202 CFACGIGDLITIKLSYGSILG 222 C CG G+L +L YGS LG Sbjct: 691 CPKCG-GELAIKQLKYGSFLG 710 >gnl|CDD|178215 PLN02605, PLN02605, monogalactosyldiacylglycerol synthase. Length = 382 Score = 26.1 bits (58), Expect = 8.7 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%) Query: 169 LKDIFSLLFQDVARV--LDLWKKDTG 192 +KD F L F D +V +DLWK+ T Sbjct: 19 IKDAFQLEFGDEYQVFIVDLWKEHTP 44 >gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase; Validated. Length = 405 Score = 25.9 bits (57), Expect = 9.7 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%) Query: 18 FFDTISSTNDECMKRA--LSGDLGNL 41 + DE MKRA L G+L L Sbjct: 374 LAGQLPGAKDEIMKRALGLKGELPEL 399 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.324 0.141 0.433 Gapped Lambda K H 0.267 0.0684 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,090,330 Number of extensions: 256845 Number of successful extensions: 395 Number of sequences better than 10.0: 1 Number of HSP's gapped: 379 Number of HSP's successfully gapped: 19 Length of query: 252 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 161 Effective length of database: 4,028,145 Effective search space: 648531345 Effective search space used: 648531345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 56 (25.4 bits)