RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein
[Candidatus Liberibacter asiaticus str. psy62]
         (252 letters)



>gnl|CDD|161719 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase]
           ligase region.  The protein name suggests that this
           enzyme transfers biotin only to acetyl-CoA-carboxylase
           but it also transfers the biotin moiety to other
           proteins. The apparent orthologs among the eukaryotes
           are larger proteins that contain a single copy of this
           domain.
          Length = 237

 Score =  146 bits (371), Expect = 4e-36
 Identities = 83/238 (34%), Positives = 121/238 (50%), Gaps = 12/238 (5%)

Query: 18  FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSIS 77
             D I STN   ++ A  G L    +VA  QTAGRGRR  KW+S +G LY SL+L   + 
Sbjct: 4   VLDVIDSTNQYALELAKEGKLKGDLVVAEYQTAGRGRRGRKWLSPEGGLYFSLILRPDLP 63

Query: 78  KDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQA 137
           K     L+    +A+  V+     +G  V++KWPNDIL+  +K+ GIL E    +N    
Sbjct: 64  KSPAPGLTLVAGIAIAEVLKE---LGDQVQVKWPNDILLKDKKLGGILTELTGKENRADY 120

Query: 138 VVVGIGLNV--KHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDL---WKKDTG 192
           VV+GIG+NV  +           SL  E G IDL      L +   R  +    W +  G
Sbjct: 121 VVIGIGINVQNRKPAESLREQAISLSEEAG-IDLDR--GELIEGFLRNFEENLEWFEQEG 177

Query: 193 REEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
            +EI++ W   +  IG  +++    G I G   G+D  G LLLE+  G +++I +G+I
Sbjct: 178 IDEILSKWEKLSAHIGREVSLTTGNGEIEGIARGIDKDGALLLEDGGG-IKKIISGEI 234


>gnl|CDD|183359 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase]
           synthetase/biotin operon repressor; Provisional.
          Length = 319

 Score =  127 bits (321), Expect = 3e-30
 Identities = 76/241 (31%), Positives = 111/241 (46%), Gaps = 20/241 (8%)

Query: 17  EFFDTISSTNDECMKRAL---SGDLGNLWIVASCQTAGRGRRDNKWISDKG-NLYASLLL 72
                I STN   + R     SGDL     +A  QTAGRGRR  +W S  G NLY SL  
Sbjct: 81  TVLPVIDSTNQYLLDRIAELKSGDL----CLAEYQTAGRGRRGRQWFSPFGGNLYLSLYW 136

Query: 73  IDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132
             +        LS  + +A+   +        DV +KWPNDI +  RK+AGIL+E     
Sbjct: 137 RLNQGPAQAMGLSLVVGIAIAEALRRL--GAIDVGLKWPNDIYLNDRKLAGILVELSGET 194

Query: 133 NGLQAVVVGIGLNV-----KHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLW 187
                VV+GIG+NV         +D P+  + LQ  G  ID   + + L + +   L+L+
Sbjct: 195 GDAAHVVIGIGINVAMPDFPEELIDQPW--SDLQEAGPTIDRNQLAAELIKQLRAALELF 252

Query: 188 KKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFT 247
           ++  G    +  W+     +G  + + +    I G   G+D+ G LLLE+    V + F 
Sbjct: 253 EQ-EGLAPFLERWKKLDLFLGREVKLIIGDKEISGIARGIDEQGALLLED--DGVEKPFN 309

Query: 248 G 248
           G
Sbjct: 310 G 310


>gnl|CDD|169384 PRK08330, PRK08330, biotin--protein ligase; Provisional.
          Length = 236

 Score =  114 bits (286), Expect = 3e-26
 Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 22/240 (9%)

Query: 18  FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSIS 77
           +FD + STN+   + A   + G + IVA  QTAG GR+   W S +G L+ S++L   +S
Sbjct: 7   YFDEVDSTNEYAKRIAPDEEEGTV-IVADRQTAGHGRKGRAWASPEGGLWMSVILKPKVS 65

Query: 78  KDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQA 137
            + L  L F  A+A   V+ +    G + KIKWPND+LV  +KIAG+L+E          
Sbjct: 66  PEHLPKLVFLGALA---VVDTLREFGIEGKIKWPNDVLVNYKKIAGVLVEGKGDF----- 117

Query: 138 VVVGIGLNVKH-CPVDTPYPVTSLQRE-GGCIDLKDIFSLLFQDVARVLDLWKKD--TGR 193
           VV+GIGLNV +  P +     TS++   G  + L ++F  L       LD W K    G 
Sbjct: 118 VVLGIGLNVNNEIPDELRETATSMKEVLGREVPLIEVFKRLV----ENLDRWYKLFLEGP 173

Query: 194 EEIM-NLWRCFACGIGDLITIKLSYGSIL--GRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
            EI+  +       +G  + I +  G IL  G    +D+FG L+L    G V+++  GD+
Sbjct: 174 GEILEEVKGRSMI-LGKRVKI-IGDGEILVEGIAEDIDEFGALILRLDDGTVKKVLYGDV 231


>gnl|CDD|180776 PRK06955, PRK06955, biotin--protein ligase; Provisional.
          Length = 300

 Score = 94.5 bits (235), Expect = 2e-20
 Identities = 82/260 (31%), Positives = 115/260 (44%), Gaps = 30/260 (11%)

Query: 17  EFFDTISSTNDECMK--RAL----SGDLGNLWIVASCQTAGRGRRDNKWISDKGN-LYAS 69
           E  +   STN + M   +AL          +  VA  QTAGRGR+   W +  GN L  S
Sbjct: 36  EIVEETGSTNADLMARLKALPRSADALPAPIVRVAYEQTAGRGRQGRPWFAQPGNALLFS 95

Query: 70  LLLIDSISKDSLTLLSFAIAVAMRSVIASTLPV--GTDVKIKWPNDILVFQRKIAGILIE 127
           +  +      +L  LS A+ VA+   +A  LP   G  + +KWPND+L+  RK+AGILIE
Sbjct: 96  VACVLPRPVAALAGLSLAVGVALAEALA-ALPAALGQRIALKWPNDLLIAGRKLAGILIE 154

Query: 128 TLNLKNGLQAVVVGIGLNVK-----HCPVDTPY----------PVTSLQREGGCIDLKDI 172
           T+       AVV+GIGLNV+        VD             P  +L       +L D 
Sbjct: 155 TVWATPDATAVVIGIGLNVRRADAVAAEVDALRAREAALARGLPPVALAAACAGANLTDT 214

Query: 173 FSLLFQDVARVLDLWKKDTGREEIMNLWRCFACGIGDLITIKLSYGSILGRFV--GVDDF 230
            +     +A  L  +  D G       W       G  + + L  G+ L R V  G+D+ 
Sbjct: 215 LAAALNALAPALQAFGAD-GLAPFAARWHALHAYAGREVVL-LEDGAELARGVAHGIDET 272

Query: 231 GYLLLEEKKGCVRQIFTGDI 250
           G LLL+   G  + I  GD+
Sbjct: 273 GQLLLDTPAG-RQAIAAGDV 291


>gnl|CDD|181443 PRK08477, PRK08477, biotin--protein ligase; Provisional.
          Length = 211

 Score = 85.4 bits (212), Expect = 1e-17
 Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 21/177 (11%)

Query: 17  EFFDTISSTNDECMKRALSGDL-GNLWIVASCQTAGRGRRDNKWISDKGNLYASLLL-ID 74
             F+++ ST    +++  +G+L     IVA  QTAG G R N W   KGNL+ S  L   
Sbjct: 4   RVFESLDSTQTYLIEKIKNGELKAPFAIVAKEQTAGIGSRGNSWEGKKGNLFFSFALKES 63

Query: 75  SISKDSLTLLSFAI--AVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132
            + KD L L S +I     ++ V+     +G+ V +KWPND+ +  +KI G++    N  
Sbjct: 64  DLPKD-LPLQSSSIYFGFLLKEVLKE---LGSKVWLKWPNDLYLDDKKIGGVIT---NKI 116

Query: 133 NGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGGCIDLKDIFSLLFQDVARVLDLWKK 189
                +V GIGLN+K  P +       L  E   I    +     Q + + + LWK+
Sbjct: 117 KNF--IVCGIGLNLKFSPKNF----ACLDIE---ISDDLLLEGFLQKIEKKI-LWKQ 163


>gnl|CDD|168301 PRK05935, PRK05935, biotin--protein ligase; Provisional.
          Length = 190

 Score = 77.9 bits (192), Expect = 2e-15
 Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 28/195 (14%)

Query: 16  YEFFDTISSTNDECMKRALSGDLGNLW-------IVASCQTAGRGRRDNKWISDKGNLYA 68
           YE  +T  STN        + +  +LW       I    QTAG+G+    W S   +L A
Sbjct: 6   YEIAET-PSTN------TTAKEGMHLWDPYALTVISTREQTAGKGKFGKSWHSSDQDLLA 58

Query: 69  SL-LLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIE 127
           S    I  ++ D   L        MR      +       IKWPND+LV   K+ G+L E
Sbjct: 59  SFCFFITVLNIDVSLLFRLGTEAVMRLGEDLGITEAV---IKWPNDVLVHGEKLCGVLCE 115

Query: 128 TLNLKNGLQAVVVGIGLNVKHCP---VDTPYPVTSLQRE-GGCIDLKDIFSLLFQDVARV 183
           T+ +K GL  V++GIG+N        +    P TSLQ   G  IDL++    L + +  V
Sbjct: 116 TIPVKGGL-GVILGIGVNGNTTKDELLGIDQPATSLQELLGHPIDLEEQRERLIKHIKHV 174

Query: 184 L-----DLWKKDTGR 193
           L      L  +++  
Sbjct: 175 LIQTLPKLLARESNH 189


>gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional.
          Length = 245

 Score = 76.1 bits (187), Expect = 7e-15
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 18  FFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLID-SI 76
           F   ++ST D       +       ++A  QTAGRG     W S KGN+Y +L +    +
Sbjct: 11  FVGEVTSTMDVARTMLAAAGGKPFAVLAESQTAGRGTGGRTWTSPKGNMYFTLCIPQKGV 70

Query: 77  SKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQ 136
             + + +L     +A R+ I   L  G  V  KWPNDI+   +KI G LIE+     G +
Sbjct: 71  PPELVPVLPLITGLACRAAIMEVLH-GAAVHTKWPNDIIYAGKKIGGSLIES----EG-E 124

Query: 137 AVVVGIGLNVKHCPVDTPYPVTSLQREGGCID 168
            +++GIG+N++  P     PVT   RE   ++
Sbjct: 125 YLIIGIGMNIEVAP-----PVTDAGRESTMVN 151


>gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase;
           Provisional.
          Length = 285

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 57/169 (33%), Positives = 85/169 (50%), Gaps = 29/169 (17%)

Query: 19  FDTISSTNDEC---MKRAL-SGDL-GNLWIVASC--QTAGRGRRDNK------WISDKGN 65
           FD + ST   C   MKR + +G L  +  I+ SC  QT G G RD K      W+S+KGN
Sbjct: 22  FDVLDSTQLYCKRNMKRFIQNGKLQDDNMIIVSCNEQTNGIGTRDTKKNQDRIWLSEKGN 81

Query: 66  LYAS-LLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGI 124
           L+ + + L +    + +  L+    VA+   +     V    +IKW ND+LV  +KIAG 
Sbjct: 82  LFTTFVFLWNRNDIEKVKYLAQTCTVAISKTLEYFHLV---TQIKWINDVLVNYKKIAGC 138

Query: 125 LIETLNLKNGLQ------AVVVGIGLNV----KHCPVDTPYPVTSLQRE 163
           L+    L +          V+VGIG+NV    KH  ++  Y  TS+++E
Sbjct: 139 LVHLYYLDDFPNLNSRYVCVMVGIGINVTLEDKHNLLNNNY--TSIKKE 185


>gnl|CDD|183976 PRK13325, PRK13325, bifunctional biotin--[acetyl-CoA-carboxylase]
           ligase/pantothenate kinase; Reviewed.
          Length = 592

 Score = 62.4 bits (151), Expect = 1e-10
 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 16/237 (6%)

Query: 23  SSTNDECMKRA-LSGDLGNLWI-VASCQTAGRGRRDNKWISDKGN-LYASLLLIDSISKD 79
           +S+NDE ++ A ++ D  +  I V   Q+ GRGR+  KW    G  L  S   +    + 
Sbjct: 91  ASSNDEILELARIAPDKAHKTICVTHLQSKGRGRQGRKWSHRLGECLMFSFGWVFDRPQY 150

Query: 80  SLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVV 139
            L  LS   AVA R  ++    +G   +IKWPND++V + K+ GILIET+    G    V
Sbjct: 151 ELGSLSPVAAVACRRALSR---LGLKTQIKWPNDLVVGRDKLGGILIETVR-TGGKTVAV 206

Query: 140 VGIGLN-VKHCPVDTPYPVTSLQREG---GCIDLKDIFSLLFQDVARVLDLWKKDTGREE 195
           VGIG+N V    V+    V SL +     G  D   +   L  ++  VL  + +D G   
Sbjct: 207 VGIGINFVLPKEVENAASVQSLFQTASRRGNADAAVLLETLLAELDAVLLQYARD-GFAP 265

Query: 196 IMNLWRCFACGIGDLITIKLSYGSIL--GRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250
            +  ++      G  + + L  G  +  G   GVD  G L LE  +G  + + +G+I
Sbjct: 266 FVAEYQAANRDHGKAVLL-LRDGETVFEGTVKGVDGQGVLHLETAEG-KQTVVSGEI 320


>gnl|CDD|183426 PRK12309, PRK12309, transaldolase/EF-hand domain-containing
           protein; Provisional.
          Length = 391

 Score = 28.5 bits (64), Expect = 1.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 180 VARVLDLWKKDTGREE 195
           V R+LD +KK+TGR+ 
Sbjct: 183 VGRILDWYKKETGRDS 198


>gnl|CDD|179404 PRK02277, PRK02277, orotate phosphoribosyltransferase-like protein;
           Provisional.
          Length = 200

 Score = 26.4 bits (59), Expect = 7.3
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 4/44 (9%)

Query: 105 DVKIKWPNDILVFQ---RKIAGILIETLNLKNGLQAVVVGIGLN 145
           D+ I W + I       R IA  + + L  ++    VVVGI  +
Sbjct: 53  DIHIDWSS-IGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKS 95


>gnl|CDD|184711 PRK14499, PRK14499, molybdenum cofactor biosynthesis protein
           MoaC/MOSC-domain-containing protein; Provisional.
          Length = 308

 Score = 26.4 bits (58), Expect = 7.3
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 69  SLLLIDSISK------DSLTLLSFAIAVAMRSVIASTLPVGTDVKI 108
           SLL I SI K        L    FA  +   ++    + +GT +KI
Sbjct: 206 SLLDISSIKKMEEYGLKGLCFGKFAENITTENLDLQKISLGTKLKI 251


>gnl|CDD|180891 PRK07219, PRK07219, DNA topoisomerase I; Validated.
          Length = 822

 Score = 26.1 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 202 CFACGIGDLITIKLSYGSILG 222
           C  CG G+L   +L YGS LG
Sbjct: 691 CPKCG-GELAIKQLKYGSFLG 710


>gnl|CDD|178215 PLN02605, PLN02605, monogalactosyldiacylglycerol synthase.
          Length = 382

 Score = 26.1 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 169 LKDIFSLLFQDVARV--LDLWKKDTG 192
           +KD F L F D  +V  +DLWK+ T 
Sbjct: 19  IKDAFQLEFGDEYQVFIVDLWKEHTP 44


>gnl|CDD|181565 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
           Validated.
          Length = 405

 Score = 25.9 bits (57), Expect = 9.7
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 18  FFDTISSTNDECMKRA--LSGDLGNL 41
               +    DE MKRA  L G+L  L
Sbjct: 374 LAGQLPGAKDEIMKRALGLKGELPEL 399


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,090,330
Number of extensions: 256845
Number of successful extensions: 395
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 19
Length of query: 252
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,028,145
Effective search space: 648531345
Effective search space used: 648531345
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)