RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] (252 letters) >2cgh_A Biotin ligase; 1.8A {Mycobacterium tuberculosis} (A:1-221) Length = 221 Score = 147 bits (371), Expect = 2e-36 Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 12/204 (5%) Query: 9 QNPYSFRYEFFDTISSTNDECMKRALSGDL-GNLWIVASCQTAGRGRRDNKWISDKGNLY 67 + + STN + + RA SG + ++A QTAGRGR W + Sbjct: 25 AGSGWRQLDVVAQTGSTNADLLARAASGADIDGVVLIAEHQTAGRGRHGRGWAATARAQI 84 Query: 68 ASLLLI--DSISKDSLTLLSFAIAVAMRSVIASTLPV-GTDVKIKWPNDILVFQRKIAGI 124 + + + + LS A +A+ +A + V + +KWPND+L K+AGI Sbjct: 85 ILSVGVRVVDVPVQAWGWLSLAAGLAVLDSVAPLIAVPPAETGLKWPNDVLARGGKLAGI 144 Query: 125 LIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARV 183 L E VV+G+GLNV P + TSL G D I S L +++ Sbjct: 145 LAEVAQ-----PFVVLGVGLNVTQAPEEVDPDATSLLDLGVAAPDRNRIASRLLRELEAR 199 Query: 184 LDLWKKDTGREEIMNLWRCFACGI 207 + W+ ++ +R + I Sbjct: 200 IIQWRN--ANPQLAADYRARSLTI 221 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:65-271) Length = 207 Score = 147 bits (371), Expect = 2e-36 Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 8/192 (4%) Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNL-YASLLL 72 I STN + R G +A Q AGRGRR KW S G Y S+ Sbjct: 15 GSVAVLPVIDSTNQYLLDRIGELKSG-DACIAEYQQAGRGRRGRKWFSPFGANLYLSMFW 73 Query: 73 IDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLK 132 + LS I + M V+ V++KWPND+ + RK+AGIL+E Sbjct: 74 RLEQGPAAAIGLSLVIGIVMAEVLRKLGAD--KVRVKWPNDLYLQDRKLAGILVELTGKT 131 Query: 133 NGLQAVVVGIGLNV--KHCPVDTPYPVTSLQREGGC-IDLKDIFSLLFQDVARVLDLWKK 189 +V+G G+N+ + +E G +D + ++L +++ L+L+++ Sbjct: 132 GDAAQIVIGAGINMAMRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQ 191 Query: 190 DTGREEIMNLWR 201 + G ++ W Sbjct: 192 E-GLAPYLSRWE 202 >3bfm_A Biotin protein ligase-like protein of unknown function; YP_612389.1, structural genomics, joint center for structural genomics, JCSG; HET: 2PE; 1.70A {Silicibacter SP} (A:1-191) Length = 191 Score = 143 bits (363), Expect = 1e-35 Identities = 28/197 (14%), Positives = 53/197 (26%), Gaps = 20/197 (10%) Query: 9 QNPYSFRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYA 68 P E D ++ G + L A Sbjct: 7 TFPPLXTGEAAGPGQDPFDLACQK---------------AELGVDAGLVVYELGTDVLRA 51 Query: 69 SLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIET 128 +L+L + V ++ + + P V + W + + + + I Sbjct: 52 ALVLAPEVPLAKAXAXLPVCGVGFQNALGALAPPEVAVHLDWNGALRINGARCGRLRIAA 111 Query: 129 LNLKNGLQ--AVVVGIGLNVKHCPVDTPYP-VTSLQREGG-CIDLKDIFSLLFQDVARVL 184 Q +VVG+ L + P T+L EG + + + + Sbjct: 112 STDDPDTQPDWLVVGLDLPLWPEGDGGETPDETALYAEGCADVAAPRLLESWARHCLHWI 171 Query: 185 DLWKKDTGREEIMNLWR 201 + W + E I WR Sbjct: 172 NRWDEG-ELETIHGEWR 187 >2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* (A:1-185) Length = 185 Score = 137 bits (346), Expect = 2e-33 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 15/190 (7%) Query: 15 RYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLID 74 + + ST + + +S +VA QT GRGR KW+S +G LY S LL Sbjct: 4 NLIWLKEVDSTQERLKEWNVSY---GTALVADRQTKGRGRLGRKWLSQEGGLYFSFLLNP 60 Query: 75 SISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNG 134 ++ L L + +++ + + +KWPND+ ++K++G+L E Sbjct: 61 KEFEN-LLQLPLVLGLSVSEALEEITEI--PFSLKWPNDVYFQEKKVSGVLCELSK---- 113 Query: 135 LQAVVVGIGLNVK--HCPVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARVLDLWKKDT 191 ++VGIG+NV P + T+L G D K++ + + ++ L +K+ Sbjct: 114 -DKLIVGIGINVNQREIPEEIKDRATTLYEITGKDWDRKEVLLKVLKRISENLKKFKEK- 171 Query: 192 GREEIMNLWR 201 +E Sbjct: 172 SFKEFKGKIE 181 >2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} (A:1-191) Length = 191 Score = 124 bits (312), Expect = 1e-29 Identities = 47/201 (23%), Positives = 87/201 (43%), Gaps = 17/201 (8%) Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLI 73 I STND + A G ++A Q G+GR W SD+G LY S ++ Sbjct: 1 MEIIHLSEIDSTNDYAKELAKEGKRNF-IVLADKQNNGKGRWGRVWYSDEGGLYFS--MV 57 Query: 74 DSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQ----RKIAGILIETL 129 + +++ + + + V+ + + ++ +K+PNDI+V +K+ GIL E Sbjct: 58 LDSKLYNPKVINLLVPICIIEVLKNYVDK--ELGLKFPNDIMVKVNDNYKKLGGILTEL- 114 Query: 130 NLKNGLQAVVVGIGLNVKHC-PVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARVLDLW 187 +++GIG+NV + + SL+ G +D +I S + L+ Sbjct: 115 ----TDDYMIIGIGINVNNQIRNEIREIAISLKEITGKELDKVEILSNFLKTFESYLEKL 170 Query: 188 KKDTGR-EEIMNLWRCFACGI 207 K EI+ ++ ++ I Sbjct: 171 KNKEIDDYEILKKYKKYSITI 191 >2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... (A:1-187) Length = 187 Score = 118 bits (296), Expect = 8e-28 Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 17/189 (8%) Query: 14 FRYEFFDTISSTNDECMKRALSGDLGNLWIVASCQTAGRGRRDNKWISDKGNLYASLLLI 73 R +F I+STN+ L IVA QT G G + KW S +G L+ S++L Sbjct: 11 RRVIYFQEITSTNEFAKTSYLEEGT---VIVADKQTMGHGALNRKWESPEGGLWLSIVLS 67 Query: 74 DSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQRKIAGILIETLNLKN 133 + + L + F AV + + D +IKWPND+LV +KIAG+L+E Sbjct: 68 PKVPQKDLPKIVFLGAVGVVETLKE---FSIDGRIKWPNDVLVNYKKIAGVLVEGKG--- 121 Query: 134 GLQAVVVGIGLNVKHCPVDTPYPVTSLQREGG-CIDLKDIFSLLFQDVARVLDLWKKDTG 192 +V+GIGLNV P TS++ E G + L +F L ++ R+ + K+ Sbjct: 122 --DKIVLGIGLNV---NNKVPNGATSMKLELGSEVPLLSVFRSLITNLDRLYLNFLKNPM 176 Query: 193 REEIMNLWR 201 +I+NL R Sbjct: 177 --DILNLVR 183 >2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus HB8} PDB: 2qht_A 2qhu_A 2qhv_A (A:) Length = 237 Score = 82.9 bits (204), Expect = 4e-17 Identities = 24/161 (14%), Positives = 47/161 (29%), Gaps = 10/161 (6%) Query: 40 NLWIVASCQTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIAST 99 + + + R + G L + + I A+ V A Sbjct: 81 SWYRENGFELYWVERGGDVTYHGPGQLVGYPIFPV---GREVRRFLRQIEEAIVRVAAGY 137 Query: 100 LPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQ-AVVVGIGLNVKHCPVDTPY--- 155 + + V + K+ I + + A+ V LN V Sbjct: 138 --GISAYPTPGYAGVWVGEDKLCAIGVAVKEGVSFHGFALNVNTDLNDFTVIVPCGLKGK 195 Query: 156 PVTSLQREGGC-IDLKDIFSLLFQDVARVLDLWKKDTGREE 195 VTSL++ G + +++ + + A V L + E Sbjct: 196 GVTSLEKLLGRKVPMEEAKARVVAAFAEVFGLRPVEGSVHE 236 >1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} (A:) Length = 232 Score = 61.3 bits (148), Expect = 1e-10 Identities = 16/148 (10%), Positives = 39/148 (26%), Gaps = 11/148 (7%) Query: 48 QTAGRGRRDNKWISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVK 107 R G L ++ + D + + ++ L + Sbjct: 72 PVVDTDRGGKITWHGPGQLVGYPIIGLAEPLDVVNYVRRLEESLIQVCADLGLH---AGR 128 Query: 108 IKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYP-------VTSL 160 + + + + R + + + + + P VTSL Sbjct: 129 VDGRSGVWLPGRPARKVAAIGVRVSRATTLHGFALNCDCDLAAFTAIVPCGISDAAVTSL 188 Query: 161 QREGG-CIDLKDIFSLLFQDVARVLDLW 187 E G + + ++ + + V LD Sbjct: 189 SAELGRTVTVDEVRATVAAAVCAALDGV 216 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251) Length = 209 Score = 38.8 bits (90), Expect = 7e-04 Identities = 25/154 (16%), Positives = 47/154 (30%), Gaps = 27/154 (17%) Query: 59 WISDKGNLYASLLLIDSISKDSLTLLSFAIAVAMRSVIASTLPVGTDVKIKWPNDILVFQ 118 WI+ NL +++ + +K F VI + +G + ND+ + Sbjct: 47 WIN--NNLNYTIISKEDENKA------FDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDG 98 Query: 119 RKIAGILIE----------TLNLKNGLQAVVVGIGLNVKHCPVDT------PYPVTSLQR 162 +K G L L + L V ++ VT++ Sbjct: 99 KKFCGNAQAYINGRIXHHGCLLFDVDLSV--LANALKVSKDKFESKGVKSVRARVTNIIN 156 Query: 163 E-GGCIDLKDIFSLLFQDVARVLDLWKKDTGREE 195 E I ++ LL + + + EE Sbjct: 157 ELPKKITVEKFRDLLLEYXKKEYPEXTEYVFSEE 190 >2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... (A:188-235) Length = 48 Score = 32.9 bits (76), Expect = 0.038 Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 218 GSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 GS G +DDFG L++ G V+++ GD+ Sbjct: 11 GSFEGIAEDIDDFGRLIIRLDSGEVKKVIYGDV 43 >1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:272-321) Length = 50 Score = 27.9 bits (63), Expect = 1.2 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Query: 207 IGDLITIKLSYGSILGRFVGVDDFGYLLLEEKKGCVRQIFTGDI 250 I + + + I G G+D G LLLE+ ++ G+I Sbjct: 1 INRPVKLIIGDKEIFGISRGIDKQGALLLEQDGI-IKPWMGGEI 43 >3kd4_A Putative protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503} (A:367-506) Length = 140 Score = 27.1 bits (60), Expect = 2.3 Identities = 4/59 (6%), Positives = 15/59 (25%), Gaps = 4/59 (6%) Query: 100 LPVGTDVKIKWPNDILVFQRKIAGILIETLNLKNGLQAVVVGIGLNVKHCPVDTPYPVT 158 + + + Q K + + G+ + + + + P + Sbjct: 4 IQIKESRSVAISA----DQAKDGFAICVLPAISAGIDSWGXSALNSKRSNLFELPSLIR 58 >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* (A:831-925) Length = 95 Score = 26.2 bits (58), Expect = 4.0 Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 194 EEIMNLWRCFACGIGDLITIKLSYGSILGRFVGV 227 + ++N FA +G+ T K S +++ + V + Sbjct: 9 DPLINSILHFANLVGEPATQKSSI-ALVSKMVSL 41 >1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemic lupus erythematosus, SLE; 2.50A {Homo sapiens} (B:) Length = 118 Score = 25.3 bits (55), Expect = 7.7 Identities = 7/46 (15%), Positives = 11/46 (23%), Gaps = 4/46 (8%) Query: 207 IGDLITIKLSYGS-ILGRFVGVDDFGYLLLEEKKGCVRQIFTGDIF 251 + I +LGR D ++LE Sbjct: 38 NNTQVLINCRNNKKLLGRVKAFDRHCNMVLEN---VKEMWTEVPKS 80 >1yoz_A Hypothetical protein AF0941; APC5573, midwest center for structural genomics, MCSG, protein structure initiative, PSI, structural genomics; 2.00A {Archaeoglobus fulgidus} (A:) Length = 116 Score = 25.0 bits (54), Expect = 9.2 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query: 159 SLQREGGCIDLKDIFSLLFQDVARVLDLWKK-DTGREEIMN 198 S++ +D K+IF + D +L+L+K +EE+ Sbjct: 22 SVEEADKLLDQKNIFEMFRSDCEEILNLYKSGKAEKEEVQR 62 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.324 0.141 0.433 Gapped Lambda K H 0.267 0.0625 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,917,068 Number of extensions: 82373 Number of successful extensions: 173 Number of sequences better than 10.0: 1 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 22 Length of query: 252 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 166 Effective length of database: 2,048,819 Effective search space: 340103954 Effective search space used: 340103954 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 53 (24.4 bits)